C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protein tyrosine phosphatase, non-receptor type 20A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000204179 PTPN20A 9606 + 10:46911396-47002488 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000374218 PTPN20A-201 46911438-47002320 protein_coding
  ENST00000374339 PTPN20A-001 46932423-47000789 protein_coding
  ENST00000374342 PTPN20A-027 46911396-47002322 protein_coding
  ENST00000374346 PTPN20A-002 46911435-47002320 protein_coding
  ENST00000395721 PTPN20A-007 46911438-47002322 protein_coding
  ENST00000395722 PTPN20A-022 46911428-47002322 protein_coding
  ENST00000395725 PTPN20A-202 46911438-47002320 protein_coding
  ENST00000395727 PTPN20A-004 46911781-47000789 protein_coding
  ENST00000417004 PTPN20A-016 46911428-46999950 protein_coding
  ENST00000437863 PTPN20A-019 46940582-47002488 nonsense_mediated_decay
  ENST00000466912 PTPN20A-028 46932466-46946842 retained_intron
  ENST00000502254 PTPN20A-010 46932417-47000788 protein_coding
  ENST00000502705 PTPN20A-013 46911781-47000789 protein_coding
  ENST00000503851 PTPN20A-018 46911781-47000789 protein_coding
  ENST00000505814 PTPN20A-005 46911781-47000789 protein_coding
  ENST00000506080 PTPN20A-009 46911781-47000789 protein_coding
  ENST00000506881 PTPN20A-017 46925998-46943992 protein_coding
  ENST00000508357 PTPN20A-020 46920901-46981654 nonsense_mediated_decay
  ENST00000508602 PTPN20A-015 46932423-47000789 protein_coding
  ENST00000508715 PTPN20A-026 46911781-47000789 protein_coding
  ENST00000509599 PTPN20A-012 46911781-47000789 protein_coding
  ENST00000509774 PTPN20A-014 46911781-47000789 protein_coding
  ENST00000509900 PTPN20A-008 46911781-47000789 protein_coding
  ENST00000510335 PTPN20A-021 46911781-47000789 nonsense_mediated_decay
  ENST00000511769 PTPN20A-006 46911781-47000789 protein_coding
  ENST00000513156 PTPN20A-003 46911781-47000789 protein_coding
  ENST00000513159 PTPN20A-024 46911781-47000789 protein_coding
  ENST00000513266 PTPN20A-011 46911781-47000789 protein_coding
  ENST00000513756 PTPN20A-025 46932417-47000788 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000374218ENST00000374339ENST00000374342ENST00000374346ENST00000395721ENST00000395722ENST00000395725ENST00000506881ENST00000508357ENST00000513266
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000374218 N/A N/A N/A N/A N/A N/A N/A N/A 0.213±0.00 N/A N/A 0.312±0.00 N/A 3.329±0.00
ENST00000374339 N/A N/A 0.220±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.680±0.00 N/A N/A
ENST00000374342 0.020±0.00 0.262±0.00 N/A 1.613±0.00 0.333±0.00 0.252±0.00 1.108±0.00 0.899±0.00 N/A 0.251±0.00 0.471±0.19 0.826±0.30 0.108±0.00 1.941±0.00
ENST00000374346 N/A N/A N/A N/A N/A N/A N/A N/A 0.006±0.00 0.265±0.00 N/A 0.087±0.00 N/A N/A
ENST00000395721 N/A N/A N/A 0.341±0.00 N/A 0.110±0.00 N/A N/A N/A N/A N/A 0.543±0.00 N/A N/A
ENST00000395722 N/A N/A 0.297±0.00 1.654±0.00 0.245±0.14 0.164±0.00 0.768±0.00 N/A N/A N/A N/A N/A 0.043±0.00 N/A
ENST00000395725 N/A N/A N/A N/A N/A 0.239±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506881 N/A N/A N/A N/A N/A N/A N/A N/A 1.918±0.00 N/A N/A N/A N/A N/A
ENST00000508357 N/A N/A N/A N/A 0.360±0.00 0.559±0.00 N/A N/A N/A N/A N/A N/A 0.040±0.00 N/A
ENST00000513266 N/A N/A N/A N/A N/A N/A N/A 0.516±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006FW CIL_0006FW_0002 CGP 10:46911396-47313547

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004725 IEA protein tyrosine phosphatase activity
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005874 IEA microtubule
GO:0006470 IEA protein dephosphorylation
GO:0016311 IEA dephosphorylation
GO:0016791 IEA phosphatase activity
GO:0035335 IEA peptidyl-tyrosine dephosphorylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074119 protein_coding Danio_rerio
ENSDARG00000075459 ptpn20 protein tyrosine phosphatase, non-receptor type 20 protein_coding Danio_rerio
ENSMUSG00000021940 Ptpn20 protein tyrosine phosphatase, non-receptor type 20 protein_coding Mus_musculus

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