C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transcription elongation factor A (SII), 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000204219 TCEA3 9606 - 1:23381061-23424740 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000374601 TCEA3-006 23403481-23424707 protein_coding
  ENST00000374602 TCEA3-004 23408560-23419236 retained_intron
  ENST00000450454 TCEA3-001 23381061-23424740 protein_coding
  ENST00000461794 TCEA3-003 23404069-23419386 protein_coding
  ENST00000476978 TCEA3-002 23383433-23387419 protein_coding
  ENST00000492271 TCEA3-005 23417345-23418298 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000374602ENST00000450454
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000374602 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.710±0.00 N/A N/A N/A N/A
ENST00000450454 2.869±0.00 4.279±0.00 4.177±0.00 1.346±0.42 10.996±6.13 14.604±5.81 16.040±12.37 17.463±0.77 19.776±12.69 6.247±2.47 111.594±79.83 27.870±22.42 5.996±1.56 4.608±1.95

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0008270 IEA zinc ion binding
GO:0032784 IEA regulation of DNA-templated transcription, elongation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004724 tcea3 transcription elongation factor A (SII), 3 protein_coding Danio_rerio
ENSMUSG00000001604 Tcea3 transcription elongation factor A (SII), 3 protein_coding Mus_musculus

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