C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transcription elongation factor A (SII), 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000450454 TCEA3-001 ENSG00000204219 9606 - 1:23381061-23424740 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000450454
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000450454 2.869±0.00 4.279±0.00 4.177±0.00 1.346±0.42 10.996±6.13 14.604±5.81 16.040±12.37 17.463±0.77 19.776±12.69 6.247±2.47 111.594±79.83 27.870±22.42 5.996±1.56 4.608±1.95

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0008270 IEA zinc ion binding
GO:0032784 IEA regulation of DNA-templated transcription, elongation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102533 Tcea3-001 protein_coding Mus_musculus 0 1315
ENSMUST00000136812 Tcea3-002 processed_transcript Mus_musculus 0 946
ENSMUST00000143942 Tcea3-003 protein_coding Mus_musculus 0 374
ENSDART00000006061 tcea3-001 protein_coding Danio_rerio 0 279
ENSMUST00000136145 Tcea2-007 retained_intron Mus_musculus 0 228
ENSMUST00000129006 Tcea2-004 protein_coding Mus_musculus 0 228
ENSMUST00000129745 Tcea2-003 protein_coding Mus_musculus 0 228
ENSMUST00000103042 Tcea2-001 protein_coding Mus_musculus 0 228
ENSMUST00000129686 Tcea2-002 retained_intron Mus_musculus 3e-35 154
ENSMUST00000125892 Tcea2-006 retained_intron Mus_musculus 8e-26 122

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