C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SAP domain containing ribonucleoprotein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000205323 SARNP 9606 - 12:55752463-55817756 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000336133 SARNP-002 55757274-55817756 protein_coding
  ENST00000546604 SARNP-001 55752463-55817724 nonsense_mediated_decay
  ENST00000552080 SARNP-005 55760424-55817709 protein_coding
  ENST00000552207 SARNP-004 55792542-55817720 retained_intron
  ENST00000552884 SARNP-003 55752580-55817722 nonsense_mediated_decay
  ENST00000552946 SARNP-006 55757271-55760785 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000336133ENST00000546604
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000336133 43.887±0.00 36.875±0.00 N/A 20.326±13.42 30.545±0.00 33.116±0.00 10.858±7.55 22.278±19.55 14.434±0.00 17.992±9.95 12.299±6.82 59.157±35.10 42.837±20.03 91.419±9.60
ENST00000546604 N/A N/A 2.045±0.00 4.511±0.00 7.834±0.00 N/A N/A 2.468±0.00 5.310±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000346 IDA transcription export complex
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006406 IDA mRNA export from nucleus
GO:0006417 IEA regulation of translation
GO:0016607 IDA nuclear speck
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059357 sarnp SAP domain containing ribonucleoprotein protein_coding Danio_rerio
ENSMUSG00000051255 Gm6563 predicted pseudogene 6563 protein_coding Mus_musculus
ENSMUSG00000078427 Sarnp SAP domain containing ribonucleoprotein protein_coding Mus_musculus

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