C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SAP domain containing ribonucleoprotein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000546604 SARNP-001 ENSG00000205323 9606 - 12:55752463-55817724 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastKidneyLiverENST00000546604
Transcript ID Bladder Brain Breast Kidney Liver
ENST00000546604 2.045±0.00 4.511±0.00 7.834±0.00 2.468±0.00 5.310±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000346 IDA transcription export complex
GO:0003677 IEA DNA binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006406 IDA mRNA export from nucleus
GO:0006417 IEA regulation of translation
GO:0016607 IDA nuclear speck
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000105230 Sarnp-201 protein_coding Mus_musculus 0 848
ENSMUST00000056396 Gm6563-201 protein_coding Mus_musculus 0 846
ENSMUST00000026408 Gdf11-001 protein_coding Mus_musculus 0 368

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