C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small integral membrane protein 11
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000205670 SMIM11 9606 + 21:34375480-34407866 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000399292 SMIM11-003 34375500-34389154 protein_coding
  ENST00000399295 SMIM11-004 34375604-34389153 protein_coding
  ENST00000399299 SMIM11-002 34375500-34402777 protein_coding
  ENST00000474455 SMIM11-005 34375568-34386633 retained_intron
  ENST00000481710 SMIM11-001 34375480-34402777 processed_transcript
  ENST00000489469 SMIM11-007 34375509-34400175 retained_intron
  ENST00000495363 SMIM11-006 34375561-34407866 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000489469
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000489469 0.162±0.00 0.331±0.00 0.754±0.21 0.660±0.03 0.544±0.33 0.205±0.06 0.323±0.18 0.096±0.04 0.650±0.24 0.178±0.00 0.212±0.21 0.232±0.03 0.164±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008ON CIL_0008ON_0001 VISTA 21:34142879-34745057
CIL_0007SX CIL_0007SX_0001 VISTA 21:34145397-34749042
CIL_0008OM CIL_0008OM_0001 VISTA 21:34146393-34747421
CIL_0008ZS CIL_0008ZS_0001 VISTA 21:34243666-34847364
CIL_00094R CIL_00094R_0001 VISTA 21:34258399-34859715
CIL_000441 CIL_000441_0001 CGP 21:34364024-34407866
CIL_000786 CIL_000786_0001 CGP 21:34375480-34407866

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000051989 Smim11 small integral membrane protein 11 protein_coding Mus_musculus

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