C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008OM_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm768 VISTA 9606 21:34146393-34747421
GeneTranscriptPositionBiotype
ENSG00000159197 (KCNE2)
potassium voltage-gated channel, Isk-related family, member 2 		ENST00000290310 (KCNE2-001) 34364024-34371389 protein_coding
ENSG00000159200 (RCAN1)
regulator of calcineurin 1 		ENST00000313806 (RCAN1-001) 34516484-34615142 protein_coding
ENST00000381132 (RCAN1-003) 34516484-34526963 protein_coding
ENST00000381135 (RCAN1-201) 34516445-34525467 protein_coding
ENST00000399272 (RCAN1-004) 34516484-34613843 protein_coding
ENST00000443408 (RCAN1-202) 34516445-34614446 protein_coding
ENST00000463276 (RCAN1-009) 34523546-34615083 processed_transcript
ENST00000481448 (RCAN1-005) 34516484-34526850 protein_coding
ENST00000482533 (RCAN1-006) 34516484-34524289 protein_coding
ENST00000487434 (RCAN1-008) 34513142-34521583 processed_transcript
ENST00000487990 (RCAN1-010) 34516484-34560179 protein_coding
ENST00000489903 (RCAN1-002) 34516484-34614446 processed_transcript
ENST00000492600 (RCAN1-007) 34521060-34526824 protein_coding
ENST00000609325 (RCAN1-011) 34521071-34523117 retained_intron
ENST00000620920 (RCAN1-203) 34516445-34524637 protein_coding
ENSG00000159212 (CLIC6)
chloride intracellular channel 6 		ENST00000349499 (CLIC6-002) 34669389-34718227 protein_coding
ENST00000360731 (CLIC6-001) 34669389-34718227 protein_coding
ENSG00000222018 (C21orf140)
chromosome 21 open reading frame 140 		ENST00000410005 (C21orf140-001) 34400317-34401072 protein_coding
ENSG00000225555 (AP000320.6)
 ENST00000440403 (AP000320.6-001) 34370802-34375348 antisense
ENSG00000227456 (LINC00310)
long intergenic non-protein coding RNA 310 		ENST00000416145 (LINC00310-002) 34180744-34188562 lincRNA
ENST00000419881 (LINC00310-003) 34180760-34189197 lincRNA
ENST00000428914 (LINC00310-001) 34180677-34183245 lincRNA
ENST00000430922 (LINC00310-004) 34180748-34189922 lincRNA
ENST00000609062 (LINC00310-006) 34180715-34189066 lincRNA
ENST00000609947 (LINC00310-005) 34180729-34189183 lincRNA
ENST00000619549 (LINC00310-007) 34185866-34188877 lincRNA
ENSG00000230978 (LINC00160)
long intergenic non-protein coding RNA 160 		ENST00000430635 (LINC00160-001) 34723807-34737181 lincRNA
ENSG00000234380 (LINC01426)
long intergenic non-protein coding RNA 1426 		ENST00000419921 (LINC01426-002) 34745837-34748367 antisense
ENST00000420877 (LINC01426-001) 34745757-34784886 antisense
ENSG00000272958 (CMP21-97G8.2)
 ENST00000608289 (CMP21-97G8.2-001) 34425508-34426017 lincRNA
ENSG00000273104 (CMP21-97G8.1)
 ENST00000608665 (CMP21-97G8.1-001) 34412200-34412587 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0008OM_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm768 VISTA 10090 16:92044467-92645647
GeneTranscriptPositionBiotype
ENSMUSG00000022949 (Clic6)
chloride intracellular channel 6 		ENSMUST00000023670 (Clic6-001) 92498134-92541243 protein_coding
ENSMUST00000162181 (Clic6-002) 92485736-92528805 protein_coding
ENSMUSG00000022951 (Rcan1)
regulator of calcineurin 1 		ENSMUST00000023672 (Rcan1-201) 92391953-92400077 protein_coding
ENSMUST00000060005 (Rcan1-202) 92391953-92466146 protein_coding
ENSMUSG00000022952 (Runx1)
runt related transcription factor 1 		ENSMUST00000023673 (Runx1-001) 92601466-92826149 protein_coding
ENSMUST00000113956 (Runx1-003) 92603656-92697328 protein_coding
ENSMUST00000168195 (Runx1-004) 92605398-92696125 protein_coding
ENSMUST00000186296 (Runx1-002) 92695592-92825778 protein_coding
ENSMUST00000187242 (Runx1-007) 92686956-92695495 protein_coding
ENSMUST00000189126 (Runx1-005) 92686989-92697325 retained_intron
ENSMUST00000189679 (Runx1-006) 92815428-92826074 protein_coding
ENSMUSG00000039639 (Kcne1)
potassium voltage-gated channel, Isk-related subfamily, member 1 		ENSMUST00000051705 (Kcne1-201) 92346001-92359468 protein_coding
ENSMUST00000166707 (Kcne1-202) 92348432-92358874 protein_coding
ENSMUSG00000039672 (Kcne2)
potassium voltage-gated channel, Isk-related subfamily, gene 2 		ENSMUST00000047383 (Kcne2-001) 92292389-92298129 protein_coding
ENSMUST00000113971 (Kcne2-002) 92295616-92298129 protein_coding
ENSMUSG00000039680 (Mrps6)
mitochondrial ribosomal protein S6 		ENSMUST00000047429 (Mrps6-001) 92058270-92112227 protein_coding
ENSMUST00000138961 (Mrps6-003) 92106261-92112227 processed_transcript
ENSMUSG00000051297 (2410124H12Rik)
RIKEN cDNA 2410124H12 gene 		ENSMUST00000160494 (2410124H12Rik-001) 92478742-92497366 protein_coding
ENSMUSG00000051728 (4930563D23Rik)
RIKEN cDNA 4930563D23 gene 		ENSMUST00000062638 (4930563D23Rik-201) 92318763-92321441 protein_coding
ENSMUSG00000051989 (Smim11)
small integral membrane protein 11 		ENSMUST00000063641 (Smim11-001) 92301286-92313041 protein_coding
ENSMUST00000118064 (Smim11-002) 92301296-92311424 protein_coding
ENSMUSG00000085637 (Gm15980)
RIKEN cDNA 1700048M11 gene 		ENSMUST00000132861 (Gm15980-001) 92308716-92312468 antisense
ENSMUSG00000086331 (Gm16310)
predicted gene 16310 		ENSMUST00000124376 (Gm16310-001) 92094568-92096490 sense_intronic
ENSMUSG00000089774 (Slc5a3)
solute carrier family 5 (inositol transporters), member 3 		ENSMUST00000113975 (Slc5a3-001) 92058322-92087473 protein_coding
ENSMUST00000131098 (Slc5a3-002) 92078062-92083808 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008OM_0001ENSG00000159197ENST00000290310ENSG00000159200ENST00000313806ENST00000381132ENST00000381135ENST00000399272ENST00000443408ENST00000463276ENST00000481448ENST00000482533ENST00000487434ENST00000487990ENST00000489903ENST00000492600ENST00000609325ENST00000620920ENSG00000159212ENST00000349499ENST00000360731ENSG00000222018ENST00000410005ENSG00000225555ENST00000440403ENSG00000227456ENST00000416145ENST00000419881ENST00000428914ENST00000430922ENST00000609062ENST00000609947ENST00000619549ENSG00000230978ENST00000430635ENSG00000234380ENST00000419921ENST00000420877ENSG00000272958ENST00000608289ENSG00000273104ENST00000608665CIL_0008OM_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008OM_0001ENSG00000159197ENST00000290310ENSG00000159200ENST00000313806ENST00000381132ENST00000381135ENST00000399272ENST00000443408ENST00000481448ENST00000620920ENSG00000159212ENST00000349499ENST00000360731ENSG00000222018ENST00000410005ENSG00000225555ENST00000440403ENSG00000227456ENST00000416145ENST00000419881ENST00000428914ENST00000430922ENST00000609062ENST00000609947ENST00000619549ENSG00000230978ENST00000430635ENSG00000234380ENST00000419921ENST00000420877ENSG00000272958ENST00000608289ENSG00000273104ENST00000608665CIL_0008OM_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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000159197 ENST00000290310 0.034±0.00 0.046±0.00 N/A 0.281±0.00 0.211±0.01 0.052±0.00 N/A 0.226±0.00 0.089±0.00 N/A N/A 0.127±0.02 0.035±0.01 0.378±0.09
ENSG00000159200 ENST00000313806 27.168±0.00 12.916±0.00 N/A 19.307±15.02 14.235±11.62 6.112±4.34 24.990±0.00 21.273±0.00 41.679±0.00 11.506±0.00 4.705±3.93 3.791±2.37 10.234±0.36 7.834±1.09
ENST00000381132 6.917±0.00 N/A 11.656±0.00 N/A 7.143±0.00 2.858±0.07 9.048±2.61 8.050±1.66 6.569±0.00 4.877±0.00 N/A 3.183±1.10 22.718±4.99 1.665±0.00
ENST00000381135 N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.172±0.00 N/A 2.179±0.00 N/A N/A
ENST00000399272 N/A N/A N/A 14.048±0.00 N/A N/A N/A 7.089±0.00 N/A N/A 0.731±0.00 2.729±0.08 13.835±4.69 N/A
ENST00000443408 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.564±0.00
ENST00000463276 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481448 N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.312±0.00 N/A N/A N/A N/A
ENST00000482533 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487434 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487990 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489903 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492600 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000609325 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000620920 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.546±0.00 N/A N/A N/A
ENSG00000159212 ENST00000349499 2.940±0.00 0.790±0.00 0.140±0.00 0.987±0.80 1.540±1.05 0.388±0.25 1.514±1.46 2.133±0.00 0.569±0.35 4.460±3.88 0.649±0.00 4.106±2.18 0.131±0.07 0.818±0.56
ENST00000360731 N/A N/A N/A N/A N/A N/A 1.783±0.00 N/A N/A N/A 0.158±0.00 N/A N/A N/A
ENSG00000222018 ENST00000410005 N/A N/A N/A N/A N/A N/A N/A N/A 0.076±0.00 N/A N/A N/A N/A N/A
ENSG00000225555 ENST00000440403 0.308±0.00 0.184±0.00 N/A 0.643±0.00 0.120±0.00 0.168±0.00 0.055±0.00 0.425±0.00 0.206±0.00 N/A 0.052±0.00 0.197±0.13 0.099±0.00 2.755±0.10
ENSG00000227456 ENST00000416145 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.166±0.00 N/A N/A N/A
ENST00000419881 N/A N/A 0.907±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000428914 0.269±0.00 0.287±0.00 N/A 0.230±0.00 1.539±0.00 N/A N/A N/A N/A 0.192±0.00 N/A 0.108±0.00 0.057±0.02 0.126±0.09
ENST00000430922 N/A N/A 0.194±0.00 0.073±0.00 N/A 0.044±0.00 N/A N/A 0.274±0.21 N/A N/A 0.181±0.02 N/A N/A
ENST00000609062 N/A N/A 0.274±0.00 N/A N/A N/A 0.231±0.00 N/A N/A 0.032±0.00 N/A N/A N/A N/A
ENST00000609947 0.075±0.00 N/A N/A N/A 0.299±0.00 0.292±0.20 0.107±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000619549 N/A N/A N/A 0.047±0.00 0.384±0.00 N/A N/A 0.537±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000230978 ENST00000430635 0.022±0.00 0.165±0.00 N/A N/A N/A N/A N/A N/A N/A 0.241±0.00 0.776±0.00 N/A 0.125±0.09 0.048±0.01
ENSG00000234380 ENST00000419921 N/A 0.521±0.00 N/A 0.196±0.00 0.192±0.00 0.236±0.02 0.093±0.00 0.231±0.00 0.135±0.00 0.258±0.14 0.108±0.00 0.142±0.04 0.021±0.00 0.125±0.02
ENST00000420877 0.155±0.00 0.153±0.00 0.272±0.00 0.048±0.00 0.087±0.03 0.172±0.00 0.056±0.00 0.112±0.00 0.097±0.00 0.082±0.00 0.082±0.00 0.160±0.11 0.131±0.06 0.092±0.06
ENSG00000272958 ENST00000608289 0.203±0.00 0.318±0.00 N/A 0.277±0.00 0.277±0.00 0.071±0.00 0.099±0.00 0.215±0.00 0.035±0.00 0.220±0.05 N/A 0.235±0.20 N/A 0.151±0.03
ENSG00000273104 ENST00000608665 0.135±0.00 0.273±0.00 N/A 0.297±0.00 0.748±0.00 N/A 0.386±0.31 0.519±0.00 N/A 0.427±0.22 N/A 0.465±0.00 N/A 0.260±0.05
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022949 ENSMUST00000023670 0.485±0.16 0.134±0.07 0.123±0.00 3.344±1.00 1.466±0.38 7.783±1.21 0.270±0.26 2.114±0.31 0.179±0.12 6.589±0.27 0.040±0.03 0.542±0.17 6.629±8.12 0.615±0.24
ENSMUST00000162181 N/A N/A N/A N/A N/A N/A 0.142±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000022951 ENSMUST00000023672 2.242±0.76 N/A 4.875±0.59 5.092±0.00 4.589±3.07 N/A 10.485±0.45 15.455±1.67 2.191±0.89 4.436±1.46 21.572±8.94 4.297±2.55 11.815±5.74 3.676±0.57
ENSMUST00000060005 6.513±1.72 3.986±0.51 6.729±0.61 16.323±4.95 6.079±1.09 8.054±0.64 8.932±0.49 4.323±0.60 3.123±1.19 6.327±1.01 12.715±1.87 4.602±2.05 8.082±2.14 2.149±0.31
ENSMUSG00000022952 ENSMUST00000023673 0.693±0.13 0.200±0.05 N/A 0.033±0.00 2.238±0.91 0.795±0.20 0.112±0.06 0.104±0.02 0.479±0.48 2.806±0.42 0.118±0.04 1.130±0.28 0.143±0.05 0.035±0.02
ENSMUST00000113956 0.578±0.26 0.591±0.17 0.903±0.00 N/A 4.449±0.20 1.042±0.22 0.089±0.01 0.125±0.00 0.036±0.01 2.742±1.04 0.060±0.01 3.982±1.35 0.221±0.02 0.057±0.02
ENSMUST00000168195 0.643±0.13 0.696±0.17 N/A 0.176±0.07 7.763±3.60 2.194±0.60 0.311±0.20 0.328±0.14 0.821±0.90 4.350±0.96 0.182±0.00 5.533±1.53 0.814±0.48 0.108±0.05
ENSMUST00000186296 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000187242 N/A N/A N/A N/A N/A N/A N/A N/A 0.212±0.00 N/A N/A N/A N/A N/A
ENSMUST00000189126 N/A N/A N/A 0.014±0.00 N/A N/A 0.060±0.00 N/A 0.023±0.00 N/A N/A N/A N/A 0.062±0.01
ENSMUST00000189679 N/A N/A N/A N/A N/A N/A N/A N/A 0.057±0.00 N/A N/A N/A N/A 0.049±0.00
ENSMUSG00000039639 ENSMUST00000051705 0.047±0.02 0.038±0.00 2.825±0.54 0.013±0.01 N/A 0.017±0.00 0.713±0.00 3.805±0.56 0.003±0.00 N/A N/A 0.176±0.11 0.010±0.00 0.032±0.02
ENSMUST00000166707 0.225±0.01 0.230±0.12 N/A 0.066±0.03 0.070±0.01 0.141±0.04 9.894±2.85 7.587±0.68 0.019±0.00 0.109±0.03 N/A 0.646±0.42 0.063±0.04 0.187±0.08
ENSMUSG00000039672 ENSMUST00000047383 0.131±0.03 N/A N/A 4.890±3.19 N/A 0.719±0.10 N/A N/A N/A 12.690±0.35 N/A 0.894±0.51 0.115±0.08 0.012±0.00
ENSMUST00000113971 0.164±0.00 0.279±0.15 0.101±0.00 N/A 0.133±0.07 0.541±0.08 0.023±0.00 0.166±0.09 0.053±0.02 N/A 0.024±0.00 0.147±0.00 0.096±0.03 0.254±0.06
ENSMUSG00000039680 ENSMUST00000047429 67.493±29.96 27.669±2.67 29.866±3.05 27.421±10.77 26.440±6.49 31.144±3.91 20.580±3.47 67.449±6.83 10.706±3.87 10.397±0.94 11.433±1.49 19.678±6.81 90.145±26.38 11.140±1.44
ENSMUST00000138961 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000051297 ENSMUST00000160494 N/A N/A 0.028±0.01 0.175±0.02 N/A 0.105±0.00 0.053±0.00 0.057±0.00 N/A N/A N/A N/A 0.380±0.20 N/A
ENSMUSG00000051728 ENSMUST00000062638 0.075±0.05 0.095±0.05 0.026±0.01 0.050±0.03 0.021±0.01 0.042±0.02 0.084±0.01 0.400±0.11 0.016±0.01 0.036±0.01 N/A 0.087±0.08 0.007±0.01 59.561±11.71
ENSMUSG00000051989 ENSMUST00000063641 13.955±1.14 83.390±5.45 31.379±4.55 21.735±10.47 18.522±7.04 30.527±9.08 28.402±9.13 20.593±2.57 17.899±5.95 15.760±3.09 47.610±3.53 41.825±19.53 72.782±68.52 5.310±2.49
ENSMUST00000118064 1.562±0.00 N/A N/A N/A 2.501±0.32 2.968±1.03 1.202±0.00 1.499±0.31 1.249±0.41 2.059±0.00 N/A 2.806±0.82 N/A 0.372±0.01
ENSMUSG00000085637 ENSMUST00000132861 0.555±0.00 0.296±0.21 N/A N/A 0.441±0.09 0.744±0.00 0.768±0.00 0.869±0.00 0.383±0.32 0.821±0.00 0.289±0.15 0.819±0.37 0.263±0.07 8.631±4.49
ENSMUSG00000086331 ENSMUST00000124376 0.548±0.06 0.123±0.01 0.423±0.04 0.748±0.27 0.261±0.10 0.234±0.13 0.069±0.02 0.814±0.40 0.145±0.07 0.241±0.03 0.096±0.05 0.449±0.27 1.234±0.38 0.212±0.07
ENSMUSG00000089774 ENSMUST00000113975 8.029±2.54 4.012±0.64 0.763±0.24 2.179±0.91 4.413±1.20 3.593±0.43 0.644±0.04 10.389±2.25 0.469±0.11 1.262±0.14 0.224±0.03 3.346±0.86 3.677±1.12 1.481±0.61
ENSMUST00000131098 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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