C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA binding protein S1, serine-rich domain
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000205937 RNPS1 9606 - 16:2253116-2268412 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000301730 RNPS1-003 2253846-2268114 protein_coding
  ENST00000320225 RNPS1-001 2253116-2268412 protein_coding
  ENST00000397086 RNPS1-005 2253116-2267848 protein_coding
  ENST00000561518 RNPS1-014 2254029-2268054 protein_coding
  ENST00000561718 RNPS1-004 2253139-2268066 protein_coding
  ENST00000562205 RNPS1-011 2253123-2256866 retained_intron
  ENST00000562690 RNPS1-013 2263134-2268094 protein_coding
  ENST00000563857 RNPS1-023 2263897-2264876 retained_intron
  ENST00000564311 RNPS1-024 2255641-2268091 nonsense_mediated_decay
  ENST00000564601 RNPS1-015 2262754-2267852 protein_coding
  ENST00000564764 RNPS1-020 2262812-2267246 protein_coding
  ENST00000564822 RNPS1-012 2264315-2268114 protein_coding
  ENST00000565243 RNPS1-028 2253899-2258756 retained_intron
  ENST00000565333 RNPS1-019 2263260-2267306 protein_coding
  ENST00000565589 RNPS1-021 2264268-2266523 protein_coding
  ENST00000565678 RNPS1-007 2253130-2267603 protein_coding
  ENST00000565870 RNPS1-022 2253975-2265250 protein_coding
  ENST00000566180 RNPS1-017 2263096-2267833 protein_coding
  ENST00000566397 RNPS1-009 2253126-2264331 protein_coding
  ENST00000566458 RNPS1-002 2253117-2268397 protein_coding
  ENST00000566783 RNPS1-008 2265503-2267328 retained_intron
  ENST00000567147 RNPS1-027 2253856-2268071 protein_coding
  ENST00000568631 RNPS1-006 2253828-2267829 protein_coding
  ENST00000569598 RNPS1-025 2253840-2268095 protein_coding
  ENST00000569709 RNPS1-018 2263214-2267337 protein_coding
  ENST00000570051 RNPS1-026 2262208-2268114 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000320225ENST00000397086ENST00000564311ENST00000564601ENST00000565243ENST00000565678ENST00000566397ENST00000566783ENST00000569598ENST00000570051
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000320225 N/A N/A N/A 5.254±0.00 N/A N/A N/A N/A 1.248±0.00 N/A N/A 9.630±2.90 N/A 19.664±0.00
ENST00000397086 9.583±0.00 N/A N/A N/A N/A 8.958±0.00 9.572±0.00 7.611±0.00 2.370±0.79 N/A N/A 11.773±2.03 N/A 22.899±2.35
ENST00000564311 N/A N/A N/A N/A N/A N/A N/A 2.006±0.00 N/A N/A N/A N/A N/A N/A
ENST00000564601 N/A N/A N/A N/A N/A N/A N/A N/A 2.977±0.00 N/A N/A N/A N/A N/A
ENST00000565243 N/A 5.037±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565678 N/A N/A N/A 8.320±2.89 N/A N/A N/A N/A N/A N/A 17.775±0.00 2.772±0.00 N/A N/A
ENST00000566397 15.032±0.00 32.279±0.00 3.451±0.00 15.256±5.80 12.084±8.60 11.252±6.20 6.295±0.00 12.128±10.99 6.961±2.41 22.821±0.00 9.295±7.13 29.938±8.53 36.080±6.29 16.534±0.00
ENST00000566783 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.849±0.00 N/A N/A N/A N/A
ENST00000569598 N/A N/A N/A N/A N/A N/A 1.249±0.00 N/A N/A N/A N/A 50.643±0.00 51.357±0.00 87.356±0.00
ENST00000570051 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.873±0.00 N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000184 IDA nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000381 IMP regulation of alternative mRNA splicing, via spliceosome
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003730 IDA mRNA 3'-UTR binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006351 TAS transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0006406 TAS mRNA export from nucleus
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0031124 TAS mRNA 3'-end processing
GO:0035145 TAS exon-exon junction complex
GO:0043065 IDA positive regulation of apoptotic process
GO:0044822 IDA poly(A) RNA binding
GO:0048025 IDA negative regulation of mRNA splicing, via spliceosome
GO:0061574 IDA ASAP complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015853 rnps1 RNA binding protein S1, serine-rich domain protein_coding Danio_rerio
ENSMUSG00000034681 Rnps1 ribonucleic acid binding protein S1 protein_coding Mus_musculus

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