C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding protein S1, serine-rich domain
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000397086 RNPS1-005 ENSG00000205937 9606 - 16:2253116-2267848 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeColonHeartKidneyLiverOvaryTestisENST00000397086
Transcript ID Adipose Colon Heart Kidney Liver Ovary Testis
ENST00000397086 9.583±0.00 8.958±0.00 9.572±0.00 7.611±0.00 2.370±0.79 11.773±2.03 22.899±2.35

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000184 IDA nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000381 IMP regulation of alternative mRNA splicing, via spliceosome
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003730 IDA mRNA 3'-UTR binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006351 TAS transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0006406 TAS mRNA export from nucleus
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0031124 TAS mRNA 3'-end processing
GO:0035145 TAS exon-exon junction complex
GO:0043065 IDA positive regulation of apoptotic process
GO:0044822 IDA poly(A) RNA binding
GO:0048025 IDA negative regulation of mRNA splicing, via spliceosome
GO:0061574 IDA ASAP complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000088512 Rnps1-201 protein_coding Mus_musculus 0 1325
ENSMUST00000163717 Rnps1-203 protein_coding Mus_musculus 0 1321
ENSMUST00000115371 Rnps1-202 protein_coding Mus_musculus 0 1040
ENSMUST00000178598 Gm9825-201 protein_coding Mus_musculus 0 1035

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