C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nucleoporin 62kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000213024 NUP62 9606 - 19:49906825-49929763 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000352066 NUP62-001 49907543-49929731 protein_coding
  ENST00000413454 NUP62-201 49906829-49928246 protein_coding
  ENST00000422090 NUP62-004 49906825-49929744 protein_coding
  ENST00000593652 NUP62-013 49909395-49929504 protein_coding
  ENST00000594673 NUP62-014 49909700-49929435 protein_coding
  ENST00000595373 NUP62-022 49911061-49917641 processed_transcript
  ENST00000595463 NUP62-011 49909177-49929504 processed_transcript
  ENST00000595761 NUP62-023 49909406-49917661 protein_coding
  ENST00000596217 NUP62-003 49908106-49929504 protein_coding
  ENST00000596437 NUP62-020 49909581-49929531 protein_coding
  ENST00000596680 NUP62-017 49909752-49929429 protein_coding
  ENST00000597029 NUP62-002 49908105-49929443 protein_coding
  ENST00000597723 NUP62-005 49908105-49929475 protein_coding
  ENST00000597814 NUP62-012 49911236-49929409 processed_transcript
  ENST00000598301 NUP62-009 49912939-49929514 processed_transcript
  ENST00000599186 NUP62-018 49911173-49929465 processed_transcript
  ENST00000599560 NUP62-007 49909859-49929763 processed_transcript
  ENST00000599567 NUP62-008 49909508-49929504 protein_coding
  ENST00000599788 NUP62-015 49909737-49929475 protein_coding
  ENST00000599830 NUP62-010 49911319-49929482 processed_transcript
  ENST00000600583 NUP62-021 49909699-49929504 processed_transcript
  ENST00000600645 NUP62-024 49909510-49913090 protein_coding
  ENST00000600935 NUP62-016 49909739-49929504 protein_coding
  ENST00000601665 NUP62-019 49909855-49929465 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000352066ENST00000413454ENST00000422090ENST00000596217ENST00000597029ENST00000597723
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000352066 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.444±0.00 N/A N/A
ENST00000413454 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.454±0.00 13.425±0.00 14.978±0.00 N/A
ENST00000422090 10.863±0.00 9.738±0.00 1.025±0.00 4.365±3.55 5.101±3.08 4.190±1.65 3.111±2.23 8.013±0.00 1.946±0.00 5.949±5.03 6.843±6.39 14.744±8.09 15.293±3.96 20.549±2.06
ENST00000596217 N/A N/A 0.500±0.00 N/A N/A N/A N/A N/A N/A 0.725±0.00 N/A N/A N/A N/A
ENST00000597029 N/A N/A N/A N/A N/A N/A N/A N/A 1.507±0.00 N/A N/A 9.711±0.00 10.200±0.00 38.902±0.00
ENST00000597723 N/A N/A 1.317±0.00 N/A N/A 2.671±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0003682 NAS chromatin binding
GO:0005487 NAS nucleocytoplasmic transporter activity
GO:0005515 IPI protein binding
GO:0005635 IDA nuclear envelope
GO:0005643 ISS nuclear pore
GO:0005737 NAS cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005975 TAS carbohydrate metabolic process
GO:0006351 ISS transcription, DNA-templated
GO:0006913 NAS nucleocytoplasmic transport
GO:0007077 TAS mitotic nuclear envelope disassembly
GO:0007166 ISS cell surface receptor signaling pathway
GO:0007569 IEA cell aging
GO:0008219 ISS cell death
GO:0008285 ISS negative regulation of cell proliferation
GO:0008645 TAS hexose transport
GO:0009755 NAS hormone-mediated signaling pathway
GO:0009966 NAS regulation of signal transduction
GO:0010827 TAS regulation of glucose transport
GO:0015031 IEA protein transport
GO:0015758 TAS glucose transport
GO:0016032 TAS viral process
GO:0017056 IEA structural constituent of nuclear pore
GO:0019221 TAS cytokine-mediated signaling pathway
GO:0030159 ISS receptor signaling complex scaffold activity
GO:0030529 IDA ribonucleoprotein complex
GO:0031074 NAS nucleocytoplasmic shuttling complex
GO:0031965 IDA nuclear membrane
GO:0042059 IEA negative regulation of epidermal growth factor receptor signaling pathway
GO:0042169 ISS SH2 domain binding
GO:0043066 ISS negative regulation of apoptotic process
GO:0043069 ISS negative regulation of programmed cell death
GO:0043123 ISS positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043130 ISS ubiquitin binding
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0043407 IEA negative regulation of MAP kinase activity
GO:0044281 TAS small molecule metabolic process
GO:0045742 NAS positive regulation of epidermal growth factor receptor signaling pathway
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0046578 NAS regulation of Ras protein signal transduction
GO:0046580 IEA negative regulation of Ras protein signal transduction
GO:0046930 NAS pore complex
GO:0046966 ISS thyroid hormone receptor binding
GO:0051028 IEA mRNA transport
GO:0051425 IEA PTB domain binding
GO:0055085 TAS transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020527 nup62l nucleoporin 62 like protein_coding Danio_rerio
ENSMUSG00000043858 Nup62 nucleoporin 62 protein_coding Mus_musculus

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