C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00005I_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000214113-ENSG00000145982 CGP 9606 6:5102593-5771580
GeneTranscriptPositionBiotype
ENSG00000145982 (FARS2)
phenylalanyl-tRNA synthetase 2, mitochondrial 		ENST00000274680 (FARS2-001) 5261526-5771580 protein_coding
ENST00000324331 (FARS2-003) 5261044-5771429 protein_coding
ENST00000445533 (FARS2-002) 5404542-5431810 protein_coding
ENST00000602691 (FARS2-004) 5261326-5368712 protein_coding
ENSG00000214113 (LYRM4)
LYR motif containing 4 		ENST00000330636 (LYRM4-001) 5102593-5260939 protein_coding
ENST00000455814 (LYRM4-002) 5236284-5260721 processed_transcript
ENST00000458438 (LYRM4-003) 5108728-5132894 processed_transcript
ENST00000463032 (LYRM4-007) 5108473-5216738 nonsense_mediated_decay
ENST00000464010 (LYRM4-006) 5108423-5260733 protein_coding
ENST00000468929 (LYRM4-004) 5108419-5260742 protein_coding
ENST00000480566 (LYRM4-005) 5136174-5260742 protein_coding
ENST00000500576 (LYRM4-201) 5186600-5260950 protein_coding
ENST00000606472 (LYRM4-008) 5103629-5109234 processed_transcript
ENSG00000218574 (HNRNPA1P37)
heterogeneous nuclear ribonucleoprotein A1 pseudogene 37 		ENST00000404243 (HNRNPA1P37-001) 5609227-5610195 processed_pseudogene
ENSG00000220446 (RP3-520B18.1)
 ENST00000402778 (RP3-520B18.1-001) 5291030-5291388 processed_pseudogene
ENSG00000269985 (RP1-232P20.1)
 ENST00000602284 (RP1-232P20.1-002) 5452468-5458075 antisense
ENST00000602674 (RP1-232P20.1-001) 5451683-5458033 antisense
ENSG00000270174 (RP1-256G22.2)
 ENST00000602500 (RP1-256G22.2-001) 5664985-5695272 antisense

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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CIL_00005I_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000046573-ENSMUSG00000021420 CGP 10090 13:35978797-36537592
GeneTranscriptPositionBiotype
ENSMUSG00000021420 (Fars2)
phenylalanine-tRNA synthetase 2 (mitochondrial) 		ENSMUST00000021857 (Fars2-201) 36117411-36537592 protein_coding
ENSMUST00000099582 (Fars2-202) 36117411-36537592 protein_coding
ENSMUSG00000046573 (Lyrm4)
LYR motif containing 4 		ENSMUST00000053265 (Lyrm4-201) 35978797-36117357 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00005I_0001ENSG00000145982ENST00000274680ENST00000324331ENST00000445533ENST00000602691ENSG00000214113ENST00000330636ENST00000455814ENST00000458438ENST00000463032ENST00000464010ENST00000468929ENST00000480566ENST00000500576ENST00000606472ENSG00000218574ENST00000404243ENSG00000220446ENST00000402778ENSG00000269985ENST00000602284ENST00000602674ENSG00000270174ENST00000602500CIL_00005I_0002ENSMUSG00000021420ENSMUST00000021857ENSMUST00000099582ENSMUSG00000046573ENSMUST00000053265
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00005I_0001ENSG00000145982ENST00000274680ENST00000324331ENSG00000214113ENST00000330636ENST00000458438ENST00000463032ENST00000464010ENST00000468929ENST00000480566ENST00000500576ENST00000606472ENSG00000218574ENST00000404243ENSG00000220446ENST00000402778ENSG00000269985ENST00000602284ENST00000602674ENSG00000270174ENST00000602500CIL_00005I_0002ENSMUSG00000021420ENSMUST00000021857ENSMUST00000099582ENSMUSG00000046573ENSMUST00000053265
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000145982 ENST00000274680 3.988±0.00 8.622±0.00 3.309±0.00 4.352±0.87 5.559±1.52 3.758±0.29 4.570±0.07 5.244±0.47 5.607±0.08 6.239±0.36 3.827±0.17 5.360±3.78 7.778±0.80 8.552±0.28
ENST00000324331 N/A N/A N/A 0.599±0.00 N/A 0.695±0.00 2.476±0.00 1.714±0.00 N/A N/A 3.406±0.87 N/A N/A 4.413±0.00
ENST00000445533 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000602691 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000214113 ENST00000330636 0.433±0.00 0.801±0.00 0.170±0.00 0.674±0.14 0.325±0.05 0.307±0.23 0.178±0.06 0.225±0.09 0.236±0.14 0.242±0.03 0.195±0.00 1.032±0.55 0.664±0.27 0.841±0.42
ENST00000455814 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000458438 7.317±0.00 N/A N/A 2.214±0.00 2.186±0.30 5.865±0.00 0.852±0.51 N/A 1.230±0.00 N/A N/A N/A 3.792±1.42 N/A
ENST00000463032 N/A N/A N/A N/A N/A 0.355±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464010 3.895±0.00 1.907±0.00 N/A 2.863±1.96 1.850±0.00 7.109±0.00 0.808±0.55 3.663±0.00 1.060±0.48 5.073±0.00 1.351±0.00 11.360±5.96 5.002±1.94 8.047±0.54
ENST00000468929 2.506±0.00 7.929±0.00 0.389±0.00 4.422±0.00 4.858±0.00 N/A 2.100±0.00 2.868±0.00 2.879±0.00 1.743±1.38 1.940±0.00 4.196±0.00 5.535±0.27 8.893±0.00
ENST00000480566 N/A N/A N/A N/A N/A N/A N/A N/A 1.363±0.00 N/A N/A N/A N/A N/A
ENST00000500576 N/A 3.806±0.00 N/A 4.060±0.00 2.204±0.00 N/A 2.123±1.07 1.755±0.23 1.804±0.00 2.659±1.08 1.455±1.02 27.040±24.34 10.165±8.81 26.142±21.36
ENST00000606472 N/A N/A 0.366±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000218574 ENST00000404243 0.014±0.00 0.101±0.00 N/A N/A 0.049±0.02 0.130±0.09 0.039±0.00 0.205±0.18 0.232±0.00 0.200±0.13 0.534±0.00 0.041±0.02 0.020±0.00 0.039±0.00
ENSG00000220446 ENST00000402778 0.085±0.00 0.055±0.00 N/A 0.106±0.00 N/A N/A N/A N/A N/A N/A N/A 0.115±0.05 N/A N/A
ENSG00000269985 ENST00000602284 0.066±0.00 N/A N/A N/A N/A N/A 0.077±0.00 N/A 0.249±0.00 0.084±0.00 0.492±0.00 0.577±0.00 N/A 0.261±0.00
ENST00000602674 N/A N/A N/A 0.065±0.00 0.290±0.00 N/A 0.014±0.00 0.205±0.00 0.560±0.00 N/A N/A 0.251±0.36 0.026±0.00 0.028±0.00
ENSG00000270174 ENST00000602500 N/A N/A N/A 0.023±0.00 N/A N/A 0.373±0.00 0.105±0.00 0.311±0.00 0.097±0.00 N/A 0.236±0.00 N/A 0.058±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021420 ENSMUST00000021857 16.085±2.85 11.340±1.69 8.867±0.96 5.920±1.75 14.799±3.70 14.282±3.98 29.191±2.05 25.128±6.27 11.381±3.22 12.029±0.83 9.522±0.75 13.796±4.44 7.068±2.17 21.305±10.31
ENSMUST00000099582 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.844±1.03 2.151±0.00 N/A
ENSMUSG00000046573 ENSMUST00000053265 3.050±0.26 1.585±0.40 4.662±0.17 7.247±0.47 1.664±0.63 1.344±0.55 3.621±0.16 6.325±0.48 5.616±3.64 2.963±0.47 2.185±0.21 3.873±0.83 7.005±2.26 1.384±0.00

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