C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: progressive rod-cone degeneration
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000214140 PRCD 9606 + 17:76527586-76553578 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000397630 PRCD-004 76540471-76545345 retained_intron
  ENST00000397633 PRCD-001 76527789-76545376 processed_transcript
  ENST00000465808 PRCD-002 76538416-76544370 processed_transcript
  ENST00000586148 PRCD-008 76540090-76543387 protein_coding
  ENST00000587063 PRCD-013 76547290-76553578 processed_transcript
  ENST00000587289 PRCD-011 76540549-76553337 processed_transcript
  ENST00000587813 PRCD-009 76540536-76553574 processed_transcript
  ENST00000590555 PRCD-007 76538064-76543107 processed_transcript
  ENST00000591317 PRCD-006 76543843-76553578 processed_transcript
  ENST00000592014 PRCD-003 76540033-76543838 protein_coding
  ENST00000592340 PRCD-010 76540549-76553194 processed_transcript
  ENST00000592432 PRCD-005 76527586-76553578 processed_transcript
  ENST00000593023 PRCD-012 76546064-76553578 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainHeartMuscleOvaryPlacentaTestisENST00000397630ENST00000397633ENST00000587289ENST00000587813ENST00000591317ENST00000592014ENST00000592432
Transcript ID Bladder Brain Heart Muscle Ovary Placenta Testis
ENST00000397630 N/A N/A N/A N/A N/A N/A 2.533±0.00
ENST00000397633 N/A N/A N/A 0.624±0.00 N/A N/A N/A
ENST00000587289 N/A 5.114±0.00 N/A N/A N/A N/A N/A
ENST00000587813 N/A N/A N/A 1.566±0.00 N/A N/A N/A
ENST00000591317 N/A 0.506±0.00 N/A N/A N/A N/A N/A
ENST00000592014 N/A N/A N/A N/A 1.772±0.00 N/A N/A
ENST00000592432 0.084±0.00 N/A 0.903±0.00 N/A N/A 1.980±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000CA CIL_0000CA_0001 CGP 17:76470891-76551175
CIL_0000CF CIL_0000CF_0001 CGP 17:76527356-76553578

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0007601 IEA visual perception
GO:0016021 IEA integral component of membrane
GO:0050896 IEA response to stimulus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000075410 Gm11744 predicted gene 11744 protein_coding Mus_musculus

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