C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: surfactant associated 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000229415 SFTA3 9606 - 14:36473288-36513829 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000418548 SFTA3-007 36476466-36513252 retained_intron
  ENST00000518002 SFTA3-009 36473594-36513170 nonsense_mediated_decay
  ENST00000518446 SFTA3-005 36474749-36513775 nonsense_mediated_decay
  ENST00000518529 SFTA3-001 36473288-36513829 protein_coding
  ENST00000518987 SFTA3-006 36474678-36513506 processed_transcript
  ENST00000519052 SFTA3-004 36473288-36477966 retained_intron
  ENST00000521114 SFTA3-002 36473702-36513531 nonsense_mediated_decay
  ENST00000521380 SFTA3-010 36477019-36477628 processed_transcript
  ENST00000524122 SFTA3-008 36474712-36513235 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonLungOvaryTestisENST00000418548ENST00000518002ENST00000518529ENST00000518987ENST00000519052ENST00000524122
Transcript ID Brain Breast Colon Lung Ovary Testis
ENST00000418548 0.017±0.00 N/A N/A N/A N/A 0.402±0.00
ENST00000518002 N/A 1.018±0.00 N/A 18.662±0.00 N/A 0.137±0.05
ENST00000518529 N/A N/A N/A 11.116±0.62 N/A N/A
ENST00000518987 N/A N/A 0.082±0.00 N/A N/A N/A
ENST00000519052 0.026±0.00 N/A N/A N/A N/A N/A
ENST00000524122 N/A N/A N/A N/A 0.039±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00092P CIL_00092P_0001 VISTA 14:36045096-36646731
CIL_0008XR CIL_0008XR_0001 VISTA 14:36124115-36725121
CIL_0008R1 CIL_0008R1_0001 VISTA 14:36138356-36739990
CIL_00091S CIL_00091S_0001 VISTA 14:36141957-36745155
CIL_0007TC CIL_0007TC_0001 VISTA 14:36163945-36765327
CIL_0007XY CIL_0007XY_0001 VISTA 14:36204570-36805380
CIL_0007LS CIL_0007LS_0002 UCNEbase 14:36362793-37516218

Gene Ontology
No GO terms available.

Homologs

No Homologs available.

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