C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00092P_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs592 VISTA 9606 14:36045096-36646731
GeneTranscriptPositionBiotype
ENSG00000136327 (NKX2-8)
NK2 homeobox 8 		ENST00000258829 (NKX2-8-001) 36580579-36582607 protein_coding
ENSG00000136352 (NKX2-1)
NK2 homeobox 1 		ENST00000354822 (NKX2-1-002) 36516392-36520228 protein_coding
ENST00000498187 (NKX2-1-001) 36516392-36519693 protein_coding
ENST00000518149 (NKX2-1-004) 36516417-36521149 protein_coding
ENST00000522719 (NKX2-1-003) 36517217-36520134 protein_coding
ENST00000546983 (NKX2-1-005) 36519587-36520949 protein_coding
ENSG00000151332 (MBIP)
MAP3K12 binding inhibitory protein 1 		ENST00000318473 (MBIP-004) 36298568-36320627 protein_coding
ENST00000359527 (MBIP-003) 36298590-36320607 protein_coding
ENST00000416007 (MBIP-001) 36298558-36320676 protein_coding
ENST00000603139 (MBIP-006) 36311577-36320624 protein_coding
ENST00000603913 (MBIP-009) 36311573-36314313 processed_transcript
ENST00000604154 (MBIP-012) 36299117-36301020 processed_transcript
ENST00000604160 (MBIP-005) 36314701-36319870 protein_coding
ENST00000604336 (MBIP-008) 36308157-36320597 protein_coding
ENST00000604768 (MBIP-011) 36299118-36311590 processed_transcript
ENST00000605579 (MBIP-010) 36308017-36320577 protein_coding
ENST00000621657 (MBIP-201) 36298565-36320624 protein_coding
ENSG00000201395 (RN7SKP257)
RNA, 7SK small nuclear pseudogene 257 		ENST00000364525 (RN7SKP257-201) 36593839-36594147 misc_RNA
ENSG00000229415 (SFTA3)
surfactant associated 3 		ENST00000418548 (SFTA3-007) 36476466-36513252 retained_intron
ENST00000518002 (SFTA3-009) 36473594-36513170 nonsense_mediated_decay
ENST00000518446 (SFTA3-005) 36474749-36513775 nonsense_mediated_decay
ENST00000518529 (SFTA3-001) 36473288-36513829 protein_coding
ENST00000518987 (SFTA3-006) 36474678-36513506 processed_transcript
ENST00000519052 (SFTA3-004) 36473288-36477966 retained_intron
ENST00000521114 (SFTA3-002) 36473702-36513531 nonsense_mediated_decay
ENST00000521380 (SFTA3-010) 36477019-36477628 processed_transcript
ENST00000524122 (SFTA3-008) 36474712-36513235 nonsense_mediated_decay
ENSG00000243730 (RPL29P3)
ribosomal protein L29 pseudogene 3 		ENST00000486611 (RPL29P3-001) 36577543-36578005 processed_pseudogene
ENSG00000252312 (RN7SKP21)
RNA, 7SK small nuclear pseudogene 21 		ENST00000516503 (RN7SKP21-201) 36231555-36231774 misc_RNA
ENSG00000253563 (NKX2-1-AS1)
NKX2-1 antisense RNA 1 		ENST00000521292 (NKX2-1-AS1-001) 36519278-36523016 antisense
ENSG00000257585 (LINC00609)
long intergenic non-protein coding RNA 609 		ENST00000546508 (LINC00609-001) 36070427-36165288 lincRNA
ENSG00000257720 (ILF2P2)
interleukin enhancer binding factor 2 pseudogene 2 		ENST00000547482 (ILF2P2-001) 36054197-36055313 processed_pseudogene
ENSG00000257826 (RP11-116N8.4)
 ENST00000546376 (RP11-116N8.4-001) 36061026-36067190 lincRNA
ENSG00000258342 (RP11-116N8.1)
 ENST00000550089 (RP11-116N8.1-001) 35897982-36063743 sense_overlapping
ENSG00000258467 (PHKBP2)
phosphorylase kinase, beta pseudogene 2 		ENST00000555180 (PHKBP2-001) 36533506-36534538 unprocessed_pseudogene
ENSG00000258844 (RP11-259K15.2)
 ENST00000556542 (RP11-259K15.2-001) 36214607-36235608 lincRNA
ENSG00000259104 (PTCSC3)
papillary thyroid carcinoma susceptibility candidate 3 (non-protein coding) 		ENST00000556013 (PTCSC3-001) 36136108-36176468 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_00092P_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs592 VISTA 10090 12:56086861-56688474
GeneTranscriptPositionBiotype
ENSMUSG00000001496 (Nkx2-1)
NK2 homeobox 1 		ENSMUST00000001536 (Nkx2-1-002) 56531958-56536908 protein_coding
ENSMUST00000178477 (Nkx2-1-001) 56531958-56535106 protein_coding
ENSMUSG00000021028 (Mbip)
MAP3K12 binding inhibitory protein 1 		ENSMUST00000021416 (Mbip-201) 56328306-56345894 protein_coding
ENSMUSG00000058669 (Nkx2-9)
NK2 homeobox 9 		ENSMUST00000072631 (Nkx2-9-001) 56611389-56613284 protein_coding
ENSMUSG00000066491 (Gm6265)
predicted pseudogene 6265 		ENSMUST00000149263 (Gm6265-001) 56373593-56373823 processed_pseudogene
ENSMUSG00000088389 (Gm24685)
predicted gene, 24685 		ENSMUST00000157764 (Gm24685-201) 56266920-56267204 misc_RNA
ENSMUSG00000092515 (C87198)
expressed sequence C87198 		ENSMUST00000173553 (C87198-001) 56591059-56594996 sense_intronic
ENSMUST00000182261 (C87198-002) 56591069-56594532 sense_intronic
ENSMUSG00000098172 (Gm26973)
predicted gene, 26973 		ENSMUST00000182105 (Gm26973-002) 56537416-56607476 antisense
ENSMUST00000182733 (Gm26973-001) 56535343-56607439 antisense
ENSMUST00000183231 (Gm26973-003) 56537365-56567383 antisense

Mus musculus Ensembl (GRCm38)

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Transcripts
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000136327 ENST00000258829 N/A N/A N/A 0.098±0.00 0.041±0.00 N/A N/A N/A N/A 0.739±0.00 N/A 0.110±0.02 N/A 2.845±0.90
ENSG00000136352 ENST00000354822 N/A 0.023±0.00 N/A 0.016±0.00 N/A N/A 0.013±0.00 N/A N/A 16.061±8.89 N/A 0.250±0.21 N/A 0.051±0.00
ENST00000498187 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518149 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522719 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.142±0.00
ENST00000546983 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000151332 ENST00000318473 N/A N/A N/A 2.386±1.33 2.362±0.08 2.194±0.00 0.571±0.18 2.351±0.40 1.689±0.22 3.247±0.00 N/A 1.477±0.00 0.550±0.06 1.267±0.00
ENST00000359527 N/A N/A N/A N/A N/A N/A N/A 1.367±0.00 N/A 2.417±0.00 N/A N/A 0.521±0.02 1.173±0.00
ENST00000416007 3.225±0.00 3.981±0.00 N/A 1.972±0.68 1.607±0.00 1.960±0.72 0.769±0.00 3.939±0.00 2.453±0.00 4.446±1.20 0.967±0.00 6.226±4.12 2.637±0.08 5.437±0.00
ENST00000603139 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000603913 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000604154 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000604160 N/A N/A N/A N/A 4.038±0.00 N/A 0.454±0.00 N/A 2.383±0.00 N/A 0.966±0.00 N/A N/A N/A
ENST00000604336 N/A N/A N/A 2.275±0.00 N/A N/A N/A N/A N/A N/A N/A 12.182±0.00 7.083±0.00 6.007±2.98
ENST00000604768 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000605579 N/A N/A 0.517±0.00 1.425±0.00 1.706±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000621657 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000201395 ENST00000364525 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.862±0.00 N/A N/A N/A N/A
ENSG00000229415 ENST00000418548 N/A N/A N/A 0.017±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.402±0.00
ENST00000518002 N/A N/A N/A N/A 1.018±0.00 N/A N/A N/A N/A 18.662±0.00 N/A N/A N/A 0.137±0.05
ENST00000518446 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518529 N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.116±0.62 N/A N/A N/A N/A
ENST00000518987 N/A N/A N/A N/A N/A 0.082±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519052 N/A N/A N/A 0.026±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521114 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521380 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524122 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.039±0.00 N/A N/A
ENSG00000243730 ENST00000486611 0.039±0.00 N/A N/A 0.045±0.00 0.044±0.00 0.040±0.00 N/A 0.084±0.00 N/A 0.122±0.00 0.109±0.00 N/A N/A N/A
ENSG00000252312 ENST00000516503 N/A N/A N/A 0.428±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000253563 ENST00000521292 N/A N/A N/A 0.055±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.131±0.00
ENSG00000257585 ENST00000546508 N/A N/A N/A 0.809±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.117±0.00
ENSG00000257720 ENST00000547482 N/A N/A N/A N/A N/A 0.206±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000257826 ENST00000546376 N/A N/A N/A 0.384±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.068±0.03 0.059±0.00
ENSG00000258342 ENST00000550089 N/A N/A N/A 3.809±2.02 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000258467 ENST00000555180 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.054±0.02
ENSG00000258844 ENST00000556542 N/A 0.029±0.00 N/A 1.025±0.60 N/A 0.013±0.00 0.026±0.00 0.058±0.00 N/A 0.112±0.00 0.104±0.00 0.120±0.01 N/A 0.655±0.34
ENSG00000259104 ENST00000556013 0.100±0.00 0.341±0.00 0.653±0.00 0.504±0.13 0.389±0.12 0.123±0.00 0.164±0.00 0.710±0.00 0.163±0.00 0.693±0.00 N/A 0.737±0.75 0.121±0.00 0.978±0.57
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000001496 ENSMUST00000001536 N/A N/A N/A 2.319±1.99 N/A N/A 0.069±0.04 N/A 0.024±0.00 N/A N/A N/A N/A N/A
ENSMUST00000178477 0.035±0.02 0.033±0.02 0.168±0.03 10.010±7.98 0.055±0.03 0.030±0.00 0.218±0.13 0.025±0.01 0.111±0.13 130.076±41.99 0.026±0.01 0.212±0.08 0.085±0.04 0.044±0.03
ENSMUSG00000021028 ENSMUST00000021416 3.879±1.77 3.362±0.40 7.550±0.90 8.170±3.90 3.437±0.68 3.194±0.63 2.423±0.28 2.764±0.80 3.228±2.09 14.002±5.21 2.016±0.44 4.393±1.33 5.961±1.25 2.648±0.94
ENSMUSG00000058669 ENSMUST00000072631 0.079±0.08 0.214±0.11 0.024±0.02 0.104±0.05 N/A 0.060±0.02 0.063±0.03 N/A 0.037±0.02 N/A N/A 0.159±0.07 0.044±0.01 0.108±0.07
ENSMUSG00000066491 ENSMUST00000149263 N/A N/A 3.524±3.34 1.121±0.00 0.730±0.00 N/A 0.594±0.10 0.667±0.00 2.006±0.75 N/A 0.521±0.00 N/A 0.228±0.00 N/A
ENSMUSG00000088389 ENSMUST00000157764 N/A N/A 0.149±0.00 N/A N/A N/A N/A N/A N/A 0.942±0.36 N/A N/A N/A 1.553±0.00
ENSMUSG00000092515 ENSMUST00000173553 N/A N/A N/A 0.033±0.02 N/A N/A 0.022±0.00 N/A 0.010±0.00 0.371±0.06 N/A 0.081±0.04 0.005±0.00 N/A
ENSMUST00000182261 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.087±0.04 N/A N/A
ENSMUSG00000098172 ENSMUST00000182105 N/A N/A N/A 0.054±0.00 N/A N/A N/A N/A N/A 0.458±0.00 N/A 0.143±0.00 N/A N/A
ENSMUST00000182733 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.043±0.34 N/A N/A N/A N/A
ENSMUST00000183231 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.339±0.07 N/A N/A N/A N/A

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