C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007XY_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1166 VISTA 9606 14:36204570-36805380
GeneTranscriptPositionBiotype
ENSG00000136327 (NKX2-8)
NK2 homeobox 8 		ENST00000258829 (NKX2-8-001) 36580579-36582607 protein_coding
ENSG00000136352 (NKX2-1)
NK2 homeobox 1 		ENST00000354822 (NKX2-1-002) 36516392-36520228 protein_coding
ENST00000498187 (NKX2-1-001) 36516392-36519693 protein_coding
ENST00000518149 (NKX2-1-004) 36516417-36521149 protein_coding
ENST00000522719 (NKX2-1-003) 36517217-36520134 protein_coding
ENST00000546983 (NKX2-1-005) 36519587-36520949 protein_coding
ENSG00000151332 (MBIP)
MAP3K12 binding inhibitory protein 1 		ENST00000318473 (MBIP-004) 36298568-36320627 protein_coding
ENST00000359527 (MBIP-003) 36298590-36320607 protein_coding
ENST00000416007 (MBIP-001) 36298558-36320676 protein_coding
ENST00000603139 (MBIP-006) 36311577-36320624 protein_coding
ENST00000603913 (MBIP-009) 36311573-36314313 processed_transcript
ENST00000604154 (MBIP-012) 36299117-36301020 processed_transcript
ENST00000604160 (MBIP-005) 36314701-36319870 protein_coding
ENST00000604336 (MBIP-008) 36308157-36320597 protein_coding
ENST00000604768 (MBIP-011) 36299118-36311590 processed_transcript
ENST00000605579 (MBIP-010) 36308017-36320577 protein_coding
ENST00000621657 (MBIP-201) 36298565-36320624 protein_coding
ENSG00000183032 (SLC25A21)
solute carrier family 25 (mitochondrial oxoadipate carrier), member 21 		ENST00000331299 (SLC25A21-001) 36679289-37172866 protein_coding
ENST00000546428 (SLC25A21-002) 36725153-36759718 retained_intron
ENST00000555449 (SLC25A21-004) 36678431-37172423 protein_coding
ENST00000556444 (SLC25A21-003) 36711317-36725679 retained_intron
ENST00000557611 (SLC25A21-005) 36870475-37172346 processed_transcript
ENST00000622765 (SLC25A21-201) 36677921-36875009 protein_coding
ENSG00000198807 (PAX9)
paired box 9 		ENST00000361487 (PAX9-001) 36661865-36679715 protein_coding
ENST00000402703 (PAX9-201) 36657568-36677804 protein_coding
ENST00000553267 (PAX9-004) 36657568-36662008 processed_transcript
ENST00000554201 (PAX9-002) 36662574-36676406 protein_coding
ENST00000555639 (PAX9-005) 36657671-36663143 processed_transcript
ENST00000557107 (PAX9-003) 36665990-36676355 processed_transcript
ENSG00000201395 (RN7SKP257)
RNA, 7SK small nuclear pseudogene 257 		ENST00000364525 (RN7SKP257-201) 36593839-36594147 misc_RNA
ENSG00000229415 (SFTA3)
surfactant associated 3 		ENST00000418548 (SFTA3-007) 36476466-36513252 retained_intron
ENST00000518002 (SFTA3-009) 36473594-36513170 nonsense_mediated_decay
ENST00000518446 (SFTA3-005) 36474749-36513775 nonsense_mediated_decay
ENST00000518529 (SFTA3-001) 36473288-36513829 protein_coding
ENST00000518987 (SFTA3-006) 36474678-36513506 processed_transcript
ENST00000519052 (SFTA3-004) 36473288-36477966 retained_intron
ENST00000521114 (SFTA3-002) 36473702-36513531 nonsense_mediated_decay
ENST00000521380 (SFTA3-010) 36477019-36477628 processed_transcript
ENST00000524122 (SFTA3-008) 36474712-36513235 nonsense_mediated_decay
ENSG00000243730 (RPL29P3)
ribosomal protein L29 pseudogene 3 		ENST00000486611 (RPL29P3-001) 36577543-36578005 processed_pseudogene
ENSG00000252312 (RN7SKP21)
RNA, 7SK small nuclear pseudogene 21 		ENST00000516503 (RN7SKP21-201) 36231555-36231774 misc_RNA
ENSG00000253563 (NKX2-1-AS1)
NKX2-1 antisense RNA 1 		ENST00000521292 (NKX2-1-AS1-001) 36519278-36523016 antisense
ENSG00000258467 (PHKBP2)
phosphorylase kinase, beta pseudogene 2 		ENST00000555180 (PHKBP2-001) 36533506-36534538 unprocessed_pseudogene
ENSG00000258661 (RP11-964E11.2)
 ENST00000555107 (RP11-964E11.2-001) 36647083-36658801 antisense
ENSG00000258844 (RP11-259K15.2)
 ENST00000556542 (RP11-259K15.2-001) 36214607-36235608 lincRNA

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
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CIL_0007XY_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1166 VISTA 10090 12:56220183-56821029
GeneTranscriptPositionBiotype
ENSMUSG00000001496 (Nkx2-1)
NK2 homeobox 1 		ENSMUST00000001536 (Nkx2-1-002) 56531958-56536908 protein_coding
ENSMUST00000178477 (Nkx2-1-001) 56531958-56535106 protein_coding
ENSMUSG00000001497 (Pax9)
paired box 9 		ENSMUST00000001538 (Pax9-201) 56695639-56712822 protein_coding
ENSMUST00000152848 (Pax9-002) 56695729-56710346 retained_intron
ENSMUST00000153250 (Pax9-001) 56691767-56712707 protein_coding
ENSMUSG00000021028 (Mbip)
MAP3K12 binding inhibitory protein 1 		ENSMUST00000021416 (Mbip-201) 56328306-56345894 protein_coding
ENSMUSG00000035472 (Slc25a21)
solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21 		ENSMUST00000044634 (Slc25a21-001) 56712634-57197472 protein_coding
ENSMUST00000110680 (Slc25a21-201) 56713813-57159244 protein_coding
ENSMUST00000160709 (Slc25a21-002) 56727127-56775360 processed_transcript
ENSMUST00000160892 (Slc25a21-003) 56773512-56980393 retained_intron
ENSMUSG00000058669 (Nkx2-9)
NK2 homeobox 9 		ENSMUST00000072631 (Nkx2-9-001) 56611389-56613284 protein_coding
ENSMUSG00000066491 (Gm6265)
predicted pseudogene 6265 		ENSMUST00000149263 (Gm6265-001) 56373593-56373823 processed_pseudogene
ENSMUSG00000088389 (Gm24685)
predicted gene, 24685 		ENSMUST00000157764 (Gm24685-201) 56266920-56267204 misc_RNA
ENSMUSG00000089894 (Gm15524)
predicted gene 15524 		ENSMUST00000159874 (Gm15524-001) 56689918-56692964 antisense
ENSMUSG00000092515 (C87198)
expressed sequence C87198 		ENSMUST00000173553 (C87198-001) 56591059-56594996 sense_intronic
ENSMUST00000182261 (C87198-002) 56591069-56594532 sense_intronic
ENSMUSG00000098172 (Gm26973)
predicted gene, 26973 		ENSMUST00000182105 (Gm26973-002) 56537416-56607476 antisense
ENSMUST00000182733 (Gm26973-001) 56535343-56607439 antisense
ENSMUST00000183231 (Gm26973-003) 56537365-56567383 antisense

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007XY_0001ENSG00000136327ENST00000258829ENSG00000136352ENST00000354822ENST00000498187ENST00000518149ENST00000522719ENST00000546983ENSG00000151332ENST00000318473ENST00000359527ENST00000416007ENST00000603139ENST00000603913ENST00000604154ENST00000604160ENST00000604336ENST00000604768ENST00000605579ENST00000621657ENSG00000183032ENST00000331299ENST00000546428ENST00000555449ENST00000556444ENST00000557611ENST00000622765ENSG00000198807ENST00000361487ENST00000402703ENST00000553267ENST00000554201ENST00000555639ENST00000557107ENSG00000201395ENST00000364525ENSG00000229415ENST00000418548ENST00000518002ENST00000518446ENST00000518529ENST00000518987ENST00000519052ENST00000521114ENST00000521380ENST00000524122ENSG00000243730ENST00000486611ENSG00000252312ENST00000516503ENSG00000253563ENST00000521292ENSG00000258467ENST00000555180ENSG00000258661ENST00000555107ENSG00000258844ENST00000556542CIL_0007XY_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007XY_0001ENSG00000136327ENST00000258829ENSG00000136352ENST00000354822ENST00000522719ENSG00000151332ENST00000318473ENST00000359527ENST00000416007ENST00000604160ENST00000604336ENST00000605579ENSG00000183032ENST00000331299ENST00000546428ENST00000555449ENST00000556444ENST00000622765ENSG00000198807ENST00000361487ENST00000402703ENST00000554201ENST00000555639ENSG00000201395ENST00000364525ENSG00000229415ENST00000418548ENST00000518002ENST00000518529ENST00000518987ENST00000519052ENST00000524122ENSG00000243730ENST00000486611ENSG00000252312ENST00000516503ENSG00000253563ENST00000521292ENSG00000258467ENST00000555180ENSG00000258661ENST00000555107ENSG00000258844ENST00000556542CIL_0007XY_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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000136327 ENST00000258829 N/A N/A N/A 0.098±0.00 0.041±0.00 N/A N/A N/A N/A 0.739±0.00 N/A 0.110±0.02 N/A 2.845±0.90
ENSG00000136352 ENST00000354822 N/A 0.023±0.00 N/A 0.016±0.00 N/A N/A 0.013±0.00 N/A N/A 16.061±8.89 N/A 0.250±0.21 N/A 0.051±0.00
ENST00000498187 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518149 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522719 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.142±0.00
ENST00000546983 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000151332 ENST00000318473 N/A N/A N/A 2.386±1.33 2.362±0.08 2.194±0.00 0.571±0.18 2.351±0.40 1.689±0.22 3.247±0.00 N/A 1.477±0.00 0.550±0.06 1.267±0.00
ENST00000359527 N/A N/A N/A N/A N/A N/A N/A 1.367±0.00 N/A 2.417±0.00 N/A N/A 0.521±0.02 1.173±0.00
ENST00000416007 3.225±0.00 3.981±0.00 N/A 1.972±0.68 1.607±0.00 1.960±0.72 0.769±0.00 3.939±0.00 2.453±0.00 4.446±1.20 0.967±0.00 6.226±4.12 2.637±0.08 5.437±0.00
ENST00000603139 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000603913 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000604154 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000604160 N/A N/A N/A N/A 4.038±0.00 N/A 0.454±0.00 N/A 2.383±0.00 N/A 0.966±0.00 N/A N/A N/A
ENST00000604336 N/A N/A N/A 2.275±0.00 N/A N/A N/A N/A N/A N/A N/A 12.182±0.00 7.083±0.00 6.007±2.98
ENST00000604768 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000605579 N/A N/A 0.517±0.00 1.425±0.00 1.706±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000621657 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000183032 ENST00000331299 N/A N/A N/A 0.054±0.00 N/A N/A 0.090±0.00 N/A 0.232±0.00 N/A N/A N/A N/A 0.783±0.03
ENST00000546428 0.980±0.00 1.370±0.00 N/A N/A N/A N/A N/A 1.209±0.00 0.433±0.00 N/A N/A N/A 0.221±0.00 4.306±0.00
ENST00000555449 N/A N/A N/A N/A N/A N/A 0.213±0.00 N/A N/A N/A 0.186±0.00 N/A N/A N/A
ENST00000556444 N/A N/A N/A N/A 0.993±0.00 2.544±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557611 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000622765 N/A 0.116±0.00 0.198±0.00 0.131±0.00 0.119±0.00 0.194±0.04 0.091±0.00 0.081±0.00 N/A 0.273±0.00 N/A 0.309±0.11 0.048±0.00 0.315±0.07
ENSG00000198807 ENST00000361487 N/A N/A N/A 0.028±0.00 N/A N/A N/A N/A N/A 0.116±0.00 N/A N/A N/A N/A
ENST00000402703 N/A N/A N/A N/A 0.158±0.00 N/A N/A N/A 0.233±0.00 0.859±0.51 0.032±0.00 1.446±1.30 0.047±0.00 N/A
ENST00000553267 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554201 N/A N/A N/A N/A N/A 0.258±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555639 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.602±0.00 N/A N/A
ENST00000557107 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000201395 ENST00000364525 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.862±0.00 N/A N/A N/A N/A
ENSG00000229415 ENST00000418548 N/A N/A N/A 0.017±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.402±0.00
ENST00000518002 N/A N/A N/A N/A 1.018±0.00 N/A N/A N/A N/A 18.662±0.00 N/A N/A N/A 0.137±0.05
ENST00000518446 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518529 N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.116±0.62 N/A N/A N/A N/A
ENST00000518987 N/A N/A N/A N/A N/A 0.082±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519052 N/A N/A N/A 0.026±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521114 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521380 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524122 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.039±0.00 N/A N/A
ENSG00000243730 ENST00000486611 0.039±0.00 N/A N/A 0.045±0.00 0.044±0.00 0.040±0.00 N/A 0.084±0.00 N/A 0.122±0.00 0.109±0.00 N/A N/A N/A
ENSG00000252312 ENST00000516503 N/A N/A N/A 0.428±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000253563 ENST00000521292 N/A N/A N/A 0.055±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.131±0.00
ENSG00000258467 ENST00000555180 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.054±0.02
ENSG00000258661 ENST00000555107 N/A N/A N/A N/A N/A 0.015±0.00 N/A N/A N/A 0.014±0.00 N/A 0.057±0.04 N/A 0.183±0.06
ENSG00000258844 ENST00000556542 N/A 0.029±0.00 N/A 1.025±0.60 N/A 0.013±0.00 0.026±0.00 0.058±0.00 N/A 0.112±0.00 0.104±0.00 0.120±0.01 N/A 0.655±0.34
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000001496 ENSMUST00000001536 N/A N/A N/A 2.319±1.99 N/A N/A 0.069±0.04 N/A 0.024±0.00 N/A N/A N/A N/A N/A
ENSMUST00000178477 0.035±0.02 0.033±0.02 0.168±0.03 10.010±7.98 0.055±0.03 0.030±0.00 0.218±0.13 0.025±0.01 0.111±0.13 130.076±41.99 0.026±0.01 0.212±0.08 0.085±0.04 0.044±0.03
ENSMUSG00000001497 ENSMUST00000001538 0.008±0.00 0.014±0.00 N/A 0.024±0.01 0.023±0.00 0.096±0.02 0.099±0.08 N/A N/A 1.152±1.01 0.011±0.00 0.006±0.00 0.101±0.01 0.429±0.00
ENSMUST00000152848 N/A 0.016±0.00 N/A 0.028±0.00 0.042±0.03 0.026±0.01 0.055±0.01 N/A N/A 2.308±2.15 0.021±0.01 0.044±0.02 N/A 2.945±0.80
ENSMUST00000153250 N/A N/A N/A N/A N/A N/A 0.007±0.00 N/A N/A 0.096±0.00 0.011±0.00 0.008±0.00 N/A N/A
ENSMUSG00000021028 ENSMUST00000021416 3.879±1.77 3.362±0.40 7.550±0.90 8.170±3.90 3.437±0.68 3.194±0.63 2.423±0.28 2.764±0.80 3.228±2.09 14.002±5.21 2.016±0.44 4.393±1.33 5.961±1.25 2.648±0.94
ENSMUSG00000035472 ENSMUST00000044634 0.046±0.03 0.073±0.05 0.180±0.02 0.032±0.02 0.070±0.07 0.128±0.06 0.070±0.00 3.647±1.00 6.412±3.89 N/A 0.008±0.00 0.193±0.17 0.592±0.35 0.788±0.29
ENSMUST00000110680 0.043±0.00 N/A 0.159±0.00 0.220±0.00 N/A N/A N/A N/A 1.648±0.00 N/A N/A 0.160±0.05 1.055±0.31 N/A
ENSMUST00000160709 N/A N/A N/A 0.232±0.16 N/A N/A N/A N/A N/A N/A 0.091±0.01 0.066±0.00 0.539±0.00 N/A
ENSMUST00000160892 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000058669 ENSMUST00000072631 0.079±0.08 0.214±0.11 0.024±0.02 0.104±0.05 N/A 0.060±0.02 0.063±0.03 N/A 0.037±0.02 N/A N/A 0.159±0.07 0.044±0.01 0.108±0.07
ENSMUSG00000066491 ENSMUST00000149263 N/A N/A 3.524±3.34 1.121±0.00 0.730±0.00 N/A 0.594±0.10 0.667±0.00 2.006±0.75 N/A 0.521±0.00 N/A 0.228±0.00 N/A
ENSMUSG00000088389 ENSMUST00000157764 N/A N/A 0.149±0.00 N/A N/A N/A N/A N/A N/A 0.942±0.36 N/A N/A N/A 1.553±0.00
ENSMUSG00000089894 ENSMUST00000159874 N/A N/A N/A N/A N/A N/A N/A 0.097±0.00 0.121±0.00 0.255±0.16 N/A N/A N/A N/A
ENSMUSG00000092515 ENSMUST00000173553 N/A N/A N/A 0.033±0.02 N/A N/A 0.022±0.00 N/A 0.010±0.00 0.371±0.06 N/A 0.081±0.04 0.005±0.00 N/A
ENSMUST00000182261 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.087±0.04 N/A N/A
ENSMUSG00000098172 ENSMUST00000182105 N/A N/A N/A 0.054±0.00 N/A N/A N/A N/A N/A 0.458±0.00 N/A 0.143±0.00 N/A N/A
ENSMUST00000182733 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.043±0.34 N/A N/A N/A N/A
ENSMUST00000183231 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.339±0.07 N/A N/A N/A N/A

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