C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: long intergenic non-protein coding RNA 1158
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000233639 LINC01158 9606 - 2:104807572-104853183 processed_transcript
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000413121 LINC01158-004 104807572-104851461 lincRNA
  ENST00000443988 LINC01158-002 104807573-104851453 antisense
  ENST00000447876 LINC01158-003 104807573-104853183 antisense
  ENST00000454729 LINC01158-005 104807577-104851476 antisense
  ENST00000458253 LINC01158-001 104807577-104851458 antisense

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainColonHeartKidneyLungOvaryTestisENST00000413121ENST00000443988ENST00000447876ENST00000454729ENST00000458253
Transcript ID Adipose Bladder Brain Colon Heart Kidney Lung Ovary Testis
ENST00000413121 N/A N/A 1.364±0.00 N/A N/A N/A N/A 0.051±0.00 0.739±0.00
ENST00000443988 N/A N/A 1.500±0.00 N/A N/A 3.295±0.00 N/A 0.040±0.00 N/A
ENST00000447876 0.561±0.00 0.442±0.00 4.199±3.17 0.751±0.00 0.020±0.00 3.556±0.00 0.101±0.00 0.063±0.00 N/A
ENST00000454729 N/A N/A N/A N/A N/A 1.436±0.00 N/A N/A N/A
ENST00000458253 N/A N/A 0.512±0.00 N/A N/A 1.221±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004IW CIL_0004IW_0002 CGP 2:102736908-104860471
CIL_0007JQ CIL_0007JQ_0001 UCNEbase 2:102922366-105081592
CIL_0007T8 CIL_0007T8_0001 VISTA 2:104216357-104817372
CIL_0007ZQ CIL_0007ZQ_0001 VISTA 2:104271403-104872401
CIL_0008TY CIL_0008TY_0001 VISTA 2:104337637-104939940
CIL_0008JA CIL_0008JA_0001 VISTA 2:104383886-104985199
CIL_0008IN CIL_0008IN_0001 VISTA 2:104401122-105003398
CIL_0008O2 CIL_0008O2_0001 VISTA 2:104536515-105137711
CIL_0008KZ CIL_0008KZ_0001 VISTA 2:104548528-105151080
CIL_000902 CIL_000902_0001 VISTA 2:104600279-105202032
CIL_00096O CIL_00096O_0001 VISTA 2:104780753-105381700

Gene Ontology
No GO terms available.

Homologs

No Homologs available.

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