| Source ID |
Type |
Tax ID |
Position |
| POU3F3 |
UCNEbase |
7955 |
9:6929236-6929391  |
| Gene | Transcript | Position | Biotype |
|---|
Notice (8): Undefined index: CIL_0007JQ_0004 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007JQ_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007JQ_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007JQ_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000135972' => 'mitochondrial ribosomal protein S9',
'ENSG00000198914' => 'POU class 3 homeobox 3',
'ENSG00000199727' => 'Small nucleolar RNA U3',
'ENSG00000207249' => 'Small nucleolar RNA SNORA72',
'ENSG00000213301' => 'high mobility group box 3 pseudogene 11',
'ENSG00000221654' => null,
'ENSG00000221849' => null,
'ENSG00000224095' => null,
'ENSG00000224509' => null,
'ENSG00000224850' => null,
'ENSG00000225669' => null,
'ENSG00000225765' => null,
'ENSG00000227157' => null,
'ENSG00000227623' => null,
'ENSG00000227680' => null,
'ENSG00000228528' => null,
'ENSG00000228968' => null,
'ENSG00000229209' => null,
'ENSG00000229743' => 'long intergenic non-protein coding RNA 1159',
'ENSG00000230690' => null,
'ENSG00000231626' => null,
'ENSG00000231723' => null,
'ENSG00000232597' => null,
'ENSG00000233639' => 'long intergenic non-protein coding RNA 1158',
'ENSG00000233955' => 'adenosylhomocysteinase pseudogene 3',
'ENSG00000234177' => 'long intergenic non-protein coding RNA 1114',
'ENSG00000234781' => 'long intergenic non-protein coding RNA 1103',
'ENSG00000235597' => 'long intergenic non-protein coding RNA 1102',
'ENSG00000236109' => null,
'ENSG00000236141' => null,
'ENSG00000236596' => null,
'ENSG00000239587' => null,
'ENSG00000256637' => null,
'ENSG00000263685' => null,
'ENSG00000269707' => null,
'ENSG00000273515' => 'DAOA antisense RNA 1 conserved region 2',
'ENSG00000279904' => null,
'ENSMUSG00000045515' => 'POU domain, class 3, transcription factor 3',
'ENSMUSG00000053640' => 'predicted gene 9915',
'ENSMUSG00000060424' => 'POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1',
'ENSMUSG00000060679' => 'mitochondrial ribosomal protein S9',
'ENSMUSG00000077448' => 'predicted gene, 23126',
'ENSMUSG00000093436' => 'predicted gene 20646',
'ENSMUSG00000097063' => 'POU domain, class 3, transcription factor 3 adjacent noncoding transcript 2',
'ENSMUSG00000099784' => 'predicted gene 28525',
'ENSMUSG00000100178' => 'predicted gene 5267',
'ENSMUSG00000100180' => 'predicted gene 28140',
'ENSMUSG00000100185' => 'predicted gene 28634',
'ENSMUSG00000100832' => 'predicted gene 29260',
'ENSMUSG00000101299' => 'predicted gene 28175',
'ENSMUSG00000101877' => 'predicted gene 8176',
'ENSMUSG00000101919' => 'predicted gene 29664',
'ENSDARG00000061505' => 'mitochondrial ribosomal protein S9',
'ENSDARG00000095896' => 'POU class 3 homeobox 3b',
'ENSDARG00000097482' => 'si:ch73-30b17.2',
'ENSDARG00000097534' => 'si:ch73-30b17.3'
),
'gene_name_arr' => array(
'ENSG00000135972' => 'MRPS9',
'ENSG00000198914' => 'POU3F3',
'ENSG00000199727' => 'U3',
'ENSG00000207249' => 'SNORA72',
'ENSG00000213301' => 'HMGB3P11',
'ENSG00000221654' => 'AC013402.1',
'ENSG00000221849' => 'AC018880.1',
'ENSG00000224095' => 'AC108051.1',
'ENSG00000224509' => 'AC010884.1',
'ENSG00000224850' => 'AC108051.3',
'ENSG00000225669' => 'AC068535.5',
'ENSG00000225765' => 'AC068535.3',
'ENSG00000227157' => 'AC068535.2',
'ENSG00000227623' => 'AC073987.2',
'ENSG00000227680' => 'AC108051.2',
'ENSG00000228528' => 'AC068057.1',
'ENSG00000228968' => 'AC096554.1',
'ENSG00000229209' => 'AC073987.1',
'ENSG00000229743' => 'LINC01159',
'ENSG00000230690' => 'AC013402.5',
'ENSG00000231626' => 'AC013402.4',
'ENSG00000231723' => 'AC018880.2',
'ENSG00000232597' => 'AC013727.1',
'ENSG00000233639' => 'LINC01158',
'ENSG00000233955' => 'AHCYP3',
'ENSG00000234177' => 'LINC01114',
'ENSG00000234781' => 'LINC01103',
'ENSG00000235597' => 'LINC01102',
'ENSG00000236109' => 'AC013402.3',
'ENSG00000236141' => 'AC013727.2',
'ENSG00000236596' => 'AC092568.1',
'ENSG00000239587' => 'AC018730.4',
'ENSG00000256637' => 'RP11-76I14.1',
'ENSG00000263685' => 'AC010884.2',
'ENSG00000269707' => 'RP11-13J10.1',
'ENSG00000273515' => 'DAOA-AS1_2',
'ENSG00000279904' => 'CTD-2015C24.1',
'ENSMUSG00000045515' => 'Pou3f3',
'ENSMUSG00000053640' => 'Gm9915',
'ENSMUSG00000060424' => 'Pou3f3os',
'ENSMUSG00000060679' => 'Mrps9',
'ENSMUSG00000077448' => 'Gm23126',
'ENSMUSG00000093436' => 'Gm20646',
'ENSMUSG00000097063' => 'Pou3f3os2',
'ENSMUSG00000099784' => 'RP23-114H2.2',
'ENSMUSG00000100178' => 'RP24-177N20.1',
'ENSMUSG00000100180' => 'RP24-421J9.4',
'ENSMUSG00000100185' => 'RP23-59E7.1',
'ENSMUSG00000100832' => 'RP23-176M9.1',
'ENSMUSG00000101299' => 'RP24-421J9.3',
'ENSMUSG00000101877' => 'RP24-177N20.2',
'ENSMUSG00000101919' => 'RP24-421J9.5',
'ENSDARG00000061505' => 'mrps9',
'ENSDARG00000095896' => 'pou3f3b',
'ENSDARG00000097482' => 'si:ch73-30b17.2',
'ENSDARG00000097534' => 'si:ch73-30b17.3'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 12 => 'Adrenal',
(int) 21 => 'Bladder',
(int) 37 => 'Brain',
(int) 88 => 'Breast',
(int) 100 => 'Colon',
(int) 116 => 'Heart',
(int) 129 => 'Kidney',
(int) 158 => 'Liver',
(int) 174 => 'Lung',
(int) 187 => 'Muscle',
(int) 197 => 'Ovary',
(int) 220 => 'Placenta',
(int) 233 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 91,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000258455' => array(
'start' => '105037983',
'end' => '105099960',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MRPS9-001'
),
'ENST00000413583' => array(
'start' => '105089018',
'end' => '105097288',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'MRPS9-002'
),
'ENST00000472220' => array(
'start' => '105092098',
'end' => '105099900',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'MRPS9-003'
),
'ENST00000361360' => array(
'start' => '104855511',
'end' => '104860471',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'POU3F3-001'
),
'ENST00000362857' => array(
'start' => '104532773',
'end' => '104532985',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'U3.1-203'
),
'ENST00000384520' => array(
'start' => '104733234',
'end' => '104733362',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'SNORA72.1-206'
),
'ENST00000440127' => array(
'start' => '104771282',
'end' => '104771885',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'HMGB3P11-001'
),
'ENST00000408727' => array(
'start' => '104568817',
'end' => '104568920',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC013402.1-201'
),
'ENST00000418898' => array(
'start' => '103527620',
'end' => '103529261',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'AC018880.1-001'
),
'ENST00000431897' => array(
'start' => '102967408',
'end' => '102984429',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC108051.1-001'
),
'ENST00000456519' => array(
'start' => '104936411',
'end' => '105038496',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AC010884.1-001'
),
'ENST00000453878' => array(
'start' => '103011779',
'end' => '103019898',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC108051.3-002'
),
'ENST00000415161' => array(
'start' => '104678223',
'end' => '104678673',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'AC068535.5-001'
),
'ENST00000449772' => array(
'start' => '104412227',
'end' => '104414008',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC068535.3-001'
),
'ENST00000416008' => array(
'start' => '104411201',
'end' => '104415612',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC068535.2-001'
),
'ENST00000433830' => array(
'start' => '103275904',
'end' => '103276138',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'AC073987.2-001'
),
'ENST00000435291' => array(
'start' => '102987323',
'end' => '102988565',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC108051.2-001'
),
'ENST00000453322' => array(
'start' => '104703758',
'end' => '104705509',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC068057.1-001'
),
'ENST00000458182' => array(
'start' => '104125268',
'end' => '104147229',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC096554.1-001'
),
'ENST00000422683' => array(
'start' => '103109759',
'end' => '103176260',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC073987.1-001'
),
'ENST00000433433' => array(
'start' => '104865497',
'end' => '104872452',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01159-001'
),
'ENST00000434764' => array(
'start' => '104869846',
'end' => '104872595',
'transcript_biotype' => 'antisense',
'transcript_name' => 'LINC01159-002'
),
'ENST00000456999' => array(
'start' => '104659337',
'end' => '104664837',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC013402.5-001'
),
'ENST00000424257' => array(
'start' => '104580821',
'end' => '104581890',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC013402.4-001'
),
'ENST00000414265' => array(
'start' => '103623630',
'end' => '103623830',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'AC018880.2-001'
),
'ENST00000455716' => array(
'start' => '103856970',
'end' => '103880209',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC013727.1-001'
),
'ENST00000618581' => array(
'start' => '103856659',
'end' => '103865965',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC013727.1-002'
),
'ENST00000413121' => array(
'start' => '104807572',
'end' => '104851461',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01158-004'
),
'ENST00000443988' => array(
'start' => '104807573',
'end' => '104851453',
'transcript_biotype' => 'antisense',
'transcript_name' => 'LINC01158-002'
),
'ENST00000447876' => array(
'start' => '104807573',
'end' => '104853183',
'transcript_biotype' => 'antisense',
'transcript_name' => 'LINC01158-003'
),
'ENST00000454729' => array(
'start' => '104807577',
'end' => '104851476',
'transcript_biotype' => 'antisense',
'transcript_name' => 'LINC01158-005'
),
'ENST00000458253' => array(
'start' => '104807577',
'end' => '104851458',
'transcript_biotype' => 'antisense',
'transcript_name' => 'LINC01158-001'
),
'ENST00000420053' => array(
'start' => '104395002',
'end' => '104396280',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'AHCYP3-001'
),
'ENST00000421071' => array(
'start' => '104749384',
'end' => '104754875',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01114-003'
),
'ENST00000424321' => array(
'start' => '104746638',
'end' => '104755755',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01114-002'
),
'ENST00000425879' => array(
'start' => '104746640',
'end' => '104757719',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01114-001'
),
'ENST00000430551' => array(
'start' => '104488458',
'end' => '104510509',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01103-001'
),
'ENST00000414442' => array(
'start' => '104434366',
'end' => '104506105',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01102-002'
),
'ENST00000429464' => array(
'start' => '104434362',
'end' => '104507831',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01102-004'
),
'ENST00000447380' => array(
'start' => '104434378',
'end' => '104512757',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01102-003'
),
'ENST00000451400' => array(
'start' => '104433267',
'end' => '104520832',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01102-001'
),
'ENST00000438566' => array(
'start' => '104583152',
'end' => '104585354',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC013402.3-001'
),
'ENST00000447761' => array(
'start' => '103865746',
'end' => '103869688',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC013727.2-001'
),
'ENST00000440950' => array(
'start' => '103494241',
'end' => '103495842',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'AC092568.1-001'
),
'ENST00000454183' => array(
'start' => '104865407',
'end' => '104867496',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AC018730.4-001'
),
'ENST00000412112' => array(
'start' => '104053502',
'end' => '104059256',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-76I14.1-001'
),
'ENST00000537492' => array(
'start' => '103874310',
'end' => '104077604',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-76I14.1-003'
),
'ENST00000544869' => array(
'start' => '103874331',
'end' => '104077778',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-76I14.1-004'
),
'ENST00000545549' => array(
'start' => '104051975',
'end' => '104077523',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-76I14.1-002'
),
'ENST00000609391' => array(
'start' => '104051882',
'end' => '104058336',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-76I14.1-005'
),
'ENST00000579548' => array(
'start' => '104992902',
'end' => '104992980',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC010884.2-201'
),
'ENST00000598623' => array(
'start' => '104853285',
'end' => '104926052',
'transcript_biotype' => 'sense_overlapping',
'transcript_name' => 'RP11-13J10.1-001'
),
'ENST00000614829' => array(
'start' => '103953098',
'end' => '103953284',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'DAOA-AS1_2.1-201'
),
'ENST00000624047' => array(
'start' => '104706612',
'end' => '104707506',
'transcript_biotype' => 'TEC',
'transcript_name' => 'CTD-2015C24.1-001'
),
'ENSMUST00000054883' => array(
'start' => '42695768',
'end' => '42703176',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pou3f3-001'
),
'ENSMUST00000066196' => array(
'start' => '42229726',
'end' => '42231108',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm9915-201'
),
'ENSMUST00000188087' => array(
'start' => '42229727',
'end' => '42231108',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm9915-001'
),
'ENSMUST00000078844' => array(
'start' => '42648378',
'end' => '42666912',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Pou3f3os-201'
),
'ENSMUST00000176052' => array(
'start' => '42648201',
'end' => '42667672',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Pou3f3os-001'
),
'ENSMUST00000176154' => array(
'start' => '42648199',
'end' => '42666991',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Pou3f3os-011'
),
'ENSMUST00000176977' => array(
'start' => '42648200',
'end' => '42651679',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Pou3f3os-003'
),
'ENSMUST00000177136' => array(
'start' => '42693027',
'end' => '42694825',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Pou3f3os-004'
),
'ENSMUST00000180689' => array(
'start' => '42648200',
'end' => '42694825',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Pou3f3os-006'
),
'ENSMUST00000181593' => array(
'start' => '42648200',
'end' => '42693153',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Pou3f3os-007'
),
'ENSMUST00000181660' => array(
'start' => '42590782',
'end' => '42694808',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Pou3f3os-005'
),
'ENSMUST00000181725' => array(
'start' => '42648193',
'end' => '42693128',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Pou3f3os-008'
),
'ENSMUST00000185599' => array(
'start' => '42666852',
'end' => '42694842',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Pou3f3os-009'
),
'ENSMUST00000186656' => array(
'start' => '42648201',
'end' => '42693093',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Pou3f3os-002'
),
'ENSMUST00000188153' => array(
'start' => '42648200',
'end' => '42694825',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Pou3f3os-010'
),
'ENSMUST00000057208' => array(
'start' => '42851233',
'end' => '42905682',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mrps9-002'
),
'ENSMUST00000185376' => array(
'start' => '42851276',
'end' => '42899679',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mrps9-003'
),
'ENSMUST00000185523' => array(
'start' => '42851276',
'end' => '42902013',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mrps9-001'
),
'ENSMUST00000187414' => array(
'start' => '42862514',
'end' => '42899128',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Mrps9-008'
),
'ENSMUST00000188174' => array(
'start' => '42851285',
'end' => '42881931',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Mrps9-005'
),
'ENSMUST00000104260' => array(
'start' => '42866685',
'end' => '42866818',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'Gm23126-201'
),
'ENSMUST00000176807' => array(
'start' => '42694925',
'end' => '42744791',
'transcript_biotype' => 'sense_overlapping',
'transcript_name' => 'Gm20646-001'
),
'ENSMUST00000180589' => array(
'start' => '42707061',
'end' => '42713454',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Pou3f3os2-001'
),
'ENSMUST00000188773' => array(
'start' => '42750712',
'end' => '42752881',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-114H2.2-001'
),
'ENSMUST00000191574' => array(
'start' => '42103289',
'end' => '42104333',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP24-177N20.1-001'
),
'ENSMUST00000190148' => array(
'start' => '42324590',
'end' => '42355937',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP24-421J9.4-001'
),
'ENSMUST00000191087' => array(
'start' => '41526931',
'end' => '41529543',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-59E7.1-001'
),
'ENSMUST00000186391' => array(
'start' => '41781808',
'end' => '41939560',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-176M9.1-001'
),
'ENSMUST00000187227' => array(
'start' => '41918352',
'end' => '41920085',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-176M9.1-002'
),
'ENSMUST00000189138' => array(
'start' => '42261855',
'end' => '42262253',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP24-421J9.3-001'
),
'ENSMUST00000191297' => array(
'start' => '42179290',
'end' => '42180388',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP24-177N20.2-001'
),
'ENSMUST00000191125' => array(
'start' => '42238233',
'end' => '42238695',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP24-421J9.5-001'
),
'ENSDART00000087782' => array(
'start' => '14880881',
'end' => '14927548',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'mrps9-001'
),
'ENSDART00000149202' => array(
'start' => '14850018',
'end' => '14853183',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pou3f3b-001'
),
'ENSDART00000149949' => array(
'start' => '14850010',
'end' => '14853188',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pou3f3b-002'
),
'ENSDART00000157118' => array(
'start' => '14856589',
'end' => '14868157',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch73-30b17.2-001'
),
'ENSDART00000155938' => array(
'start' => '14857668',
'end' => '14860378',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch73-30b17.3-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007JQ_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007JQ_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007JQ_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007JQ_0001' => array(
'genes_in_region' => array(
'ENSG00000135972' => array(
[maximum depth reached]
),
'ENSG00000198914' => array(
[maximum depth reached]
),
'ENSG00000213301' => array(
[maximum depth reached]
),
'ENSG00000221654' => array(
[maximum depth reached]
),
'ENSG00000224095' => array(
[maximum depth reached]
),
'ENSG00000224509' => array(
[maximum depth reached]
),
'ENSG00000224850' => array(
[maximum depth reached]
),
'ENSG00000225669' => array(
[maximum depth reached]
),
'ENSG00000225765' => array(
[maximum depth reached]
),
'ENSG00000227157' => array(
[maximum depth reached]
),
'ENSG00000227680' => array(
[maximum depth reached]
),
'ENSG00000228528' => array(
[maximum depth reached]
),
'ENSG00000229209' => array(
[maximum depth reached]
),
'ENSG00000229743' => array(
[maximum depth reached]
),
'ENSG00000230690' => array(
[maximum depth reached]
),
'ENSG00000231626' => array(
[maximum depth reached]
),
'ENSG00000233639' => array(
[maximum depth reached]
),
'ENSG00000234177' => array(
[maximum depth reached]
),
'ENSG00000234781' => array(
[maximum depth reached]
),
'ENSG00000235597' => array(
[maximum depth reached]
),
'ENSG00000236109' => array(
[maximum depth reached]
),
'ENSG00000236141' => array(
[maximum depth reached]
),
'ENSG00000236596' => array(
[maximum depth reached]
),
'ENSG00000239587' => array(
[maximum depth reached]
),
'ENSG00000256637' => array(
[maximum depth reached]
),
'ENSG00000263685' => array(
[maximum depth reached]
),
'ENSG00000269707' => array(
[maximum depth reached]
),
'ENSG00000279904' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Colon',
(int) 15 => 'Adipose',
(int) 16 => 'Adrenal',
(int) 17 => 'Bladder',
(int) 18 => 'Brain',
(int) 19 => 'Breast',
(int) 20 => 'Colon',
(int) 21 => 'Heart',
(int) 22 => 'Kidney',
(int) 23 => 'Liver',
(int) 24 => 'Lung',
(int) 25 => 'Ovary',
(int) 26 => 'Placenta',
(int) 27 => 'Testis',
(int) 28 => 'Brain',
(int) 29 => 'Brain',
(int) 30 => 'Ovary',
(int) 31 => 'Adrenal',
(int) 32 => 'Bladder',
(int) 33 => 'Brain',
(int) 34 => 'Breast',
(int) 35 => 'Colon',
(int) 36 => 'Kidney',
(int) 37 => 'Ovary',
(int) 38 => 'Placenta',
(int) 39 => 'Testis',
(int) 40 => 'Brain',
(int) 41 => 'Testis',
(int) 42 => 'Colon',
(int) 43 => 'Kidney',
(int) 44 => 'Liver',
(int) 45 => 'Testis',
(int) 46 => 'Brain',
(int) 47 => 'Testis',
(int) 48 => 'Testis',
(int) 49 => 'Brain',
(int) 50 => 'Breast',
(int) 51 => 'Kidney',
(int) 52 => 'Adipose',
(int) 53 => 'Adrenal',
(int) 54 => 'Brain',
(int) 55 => 'Breast',
(int) 56 => 'Colon',
(int) 57 => 'Heart',
(int) 58 => 'Kidney',
(int) 59 => 'Liver',
(int) 60 => 'Lung',
(int) 61 => 'Ovary',
(int) 62 => 'Testis',
(int) 63 => 'Adipose',
(int) 64 => 'Bladder',
(int) 65 => 'Brain',
(int) 66 => 'Kidney',
(int) 67 => 'Testis',
(int) 68 => 'Adipose',
(int) 69 => 'Bladder',
(int) 70 => 'Brain',
(int) 71 => 'Testis',
(int) 72 => 'Testis',
(int) 73 => 'Testis',
(int) 74 => 'Testis',
(int) 75 => 'Brain',
(int) 76 => 'Ovary',
(int) 77 => 'Testis',
(int) 78 => 'Brain',
(int) 79 => 'Kidney',
(int) 80 => 'Ovary',
(int) 81 => 'Adipose',
(int) 82 => 'Bladder',
(int) 83 => 'Brain',
(int) 84 => 'Colon',
(int) 85 => 'Heart',
(int) 86 => 'Kidney',
(int) 87 => 'Lung',
(int) 88 => 'Ovary',
(int) 89 => 'Kidney',
(int) 90 => 'Brain',
(int) 91 => 'Kidney',
(int) 92 => 'Brain',
(int) 93 => 'Colon',
(int) 94 => 'Kidney',
(int) 95 => 'Ovary',
(int) 96 => 'Testis',
(int) 97 => 'Bladder',
(int) 98 => 'Brain',
(int) 99 => 'Breast',
(int) 100 => 'Heart',
(int) 101 => 'Kidney',
(int) 102 => 'Testis',
(int) 103 => 'Brain',
(int) 104 => 'Muscle',
(int) 105 => 'Testis',
(int) 106 => 'Brain',
(int) 107 => 'Brain',
(int) 108 => 'Ovary',
(int) 109 => 'Adipose',
(int) 110 => 'Adrenal',
(int) 111 => 'Brain',
(int) 112 => 'Breast',
(int) 113 => 'Colon',
(int) 114 => 'Heart',
(int) 115 => 'Kidney',
(int) 116 => 'Lung',
(int) 117 => 'Muscle',
(int) 118 => 'Testis',
(int) 119 => 'Brain',
(int) 120 => 'Testis',
(int) 121 => 'Brain',
(int) 122 => 'Testis',
(int) 123 => 'Testis',
(int) 124 => 'Breast',
(int) 125 => 'Testis',
(int) 126 => 'Testis',
(int) 127 => 'Adrenal',
(int) 128 => 'Bladder',
(int) 129 => 'Brain',
(int) 130 => 'Breast',
(int) 131 => 'Heart',
(int) 132 => 'Kidney',
(int) 133 => 'Lung',
(int) 134 => 'Muscle',
(int) 135 => 'Ovary',
(int) 136 => 'Placenta',
(int) 137 => 'Testis',
(int) 138 => 'Testis',
(int) 139 => 'Adipose',
(int) 140 => 'Adrenal',
(int) 141 => 'Brain',
(int) 142 => 'Breast',
(int) 143 => 'Heart',
(int) 144 => 'Kidney',
(int) 145 => 'Ovary',
(int) 146 => 'Testis',
(int) 147 => 'Adipose',
(int) 148 => 'Bladder',
(int) 149 => 'Brain',
(int) 150 => 'Colon',
(int) 151 => 'Testis',
(int) 152 => 'Brain'
)
),
'CIL_0007JQ_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000045515' => array(
[maximum depth reached]
),
'ENSMUSG00000053640' => array(
[maximum depth reached]
),
'ENSMUSG00000060424' => array(
[maximum depth reached]
),
'ENSMUSG00000060679' => array(
[maximum depth reached]
),
'ENSMUSG00000093436' => array(
[maximum depth reached]
),
'ENSMUSG00000097063' => array(
[maximum depth reached]
),
'ENSMUSG00000099784' => array(
[maximum depth reached]
),
'ENSMUSG00000100178' => array(
[maximum depth reached]
),
'ENSMUSG00000100180' => array(
[maximum depth reached]
),
'ENSMUSG00000100185' => array(
[maximum depth reached]
),
'ENSMUSG00000100832' => array(
[maximum depth reached]
),
'ENSMUSG00000101299' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Brain',
(int) 15 => 'Brain',
(int) 16 => 'Brain',
(int) 17 => 'Ovary',
(int) 18 => 'Testis',
(int) 19 => 'Brain',
(int) 20 => 'Colon',
(int) 21 => 'Liver',
(int) 22 => 'Lung',
(int) 23 => 'Ovary',
(int) 24 => 'Liver',
(int) 25 => 'Testis',
(int) 26 => 'Kidney',
(int) 27 => 'Testis',
(int) 28 => 'Bladder',
(int) 29 => 'Brain',
(int) 30 => 'Kidney',
(int) 31 => 'Lung',
(int) 32 => 'Brain',
(int) 33 => 'Colon',
(int) 34 => 'Liver',
(int) 35 => 'Placenta',
(int) 36 => 'Testis',
(int) 37 => 'Brain',
(int) 38 => 'Liver',
(int) 39 => 'Placenta',
(int) 40 => 'Bladder',
(int) 41 => 'Kidney',
(int) 42 => 'Placenta',
(int) 43 => 'Colon',
(int) 44 => 'Liver',
(int) 45 => 'Bladder',
(int) 46 => 'Brain',
(int) 47 => 'Colon',
(int) 48 => 'Kidney',
(int) 49 => 'Liver',
(int) 50 => 'Lung',
(int) 51 => 'Ovary',
(int) 52 => 'Placenta',
(int) 53 => 'Testis',
(int) 54 => 'Adipose',
(int) 55 => 'Adrenal',
(int) 56 => 'Bladder',
(int) 57 => 'Brain',
(int) 58 => 'Breast',
(int) 59 => 'Colon',
(int) 60 => 'Heart',
(int) 61 => 'Kidney',
(int) 62 => 'Liver',
(int) 63 => 'Lung',
(int) 64 => 'Muscle',
(int) 65 => 'Ovary',
(int) 66 => 'Placenta',
(int) 67 => 'Testis',
(int) 68 => 'Brain',
(int) 69 => 'Lung',
(int) 70 => 'Ovary',
(int) 71 => 'Placenta',
(int) 72 => 'Ovary',
(int) 73 => 'Bladder',
(int) 74 => 'Brain',
(int) 75 => 'Kidney',
(int) 76 => 'Liver',
(int) 77 => 'Ovary',
(int) 78 => 'Placenta',
(int) 79 => 'Testis',
(int) 80 => 'Bladder',
(int) 81 => 'Brain',
(int) 82 => 'Testis',
(int) 83 => 'Brain',
(int) 84 => 'Kidney',
(int) 85 => 'Lung',
(int) 86 => 'Brain',
(int) 87 => 'Brain',
(int) 88 => 'Testis',
(int) 89 => 'Adipose',
(int) 90 => 'Brain',
(int) 91 => 'Liver',
(int) 92 => 'Ovary',
(int) 93 => 'Testis',
(int) 94 => 'Brain',
(int) 95 => 'Ovary',
(int) 96 => 'Brain',
(int) 97 => 'Ovary',
(int) 98 => 'Placenta'
)
),
'CIL_0007JQ_0003' => array(
'genes_in_region' => array(
'ENSDARG00000061505' => array(
[maximum depth reached]
),
'ENSDARG00000095896' => array(
[maximum depth reached]
),
'ENSDARG00000097482' => array(
[maximum depth reached]
),
'ENSDARG00000097534' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Kidney',
(int) 7 => 'Muscle',
(int) 8 => 'Brain',
(int) 9 => 'Heart',
(int) 10 => 'Kidney',
(int) 11 => 'Muscle',
(int) 12 => 'Brain',
(int) 13 => 'Kidney',
(int) 14 => 'Liver',
(int) 15 => 'Brain',
(int) 16 => 'Heart',
(int) 17 => 'Kidney',
(int) 18 => 'Muscle'
)
)
)
$gene_desc_arr = array(
'ENSG00000135972' => 'mitochondrial ribosomal protein S9',
'ENSG00000198914' => 'POU class 3 homeobox 3',
'ENSG00000199727' => 'Small nucleolar RNA U3',
'ENSG00000207249' => 'Small nucleolar RNA SNORA72',
'ENSG00000213301' => 'high mobility group box 3 pseudogene 11',
'ENSG00000221654' => null,
'ENSG00000221849' => null,
'ENSG00000224095' => null,
'ENSG00000224509' => null,
'ENSG00000224850' => null,
'ENSG00000225669' => null,
'ENSG00000225765' => null,
'ENSG00000227157' => null,
'ENSG00000227623' => null,
'ENSG00000227680' => null,
'ENSG00000228528' => null,
'ENSG00000228968' => null,
'ENSG00000229209' => null,
'ENSG00000229743' => 'long intergenic non-protein coding RNA 1159',
'ENSG00000230690' => null,
'ENSG00000231626' => null,
'ENSG00000231723' => null,
'ENSG00000232597' => null,
'ENSG00000233639' => 'long intergenic non-protein coding RNA 1158',
'ENSG00000233955' => 'adenosylhomocysteinase pseudogene 3',
'ENSG00000234177' => 'long intergenic non-protein coding RNA 1114',
'ENSG00000234781' => 'long intergenic non-protein coding RNA 1103',
'ENSG00000235597' => 'long intergenic non-protein coding RNA 1102',
'ENSG00000236109' => null,
'ENSG00000236141' => null,
'ENSG00000236596' => null,
'ENSG00000239587' => null,
'ENSG00000256637' => null,
'ENSG00000263685' => null,
'ENSG00000269707' => null,
'ENSG00000273515' => 'DAOA antisense RNA 1 conserved region 2',
'ENSG00000279904' => null,
'ENSMUSG00000045515' => 'POU domain, class 3, transcription factor 3',
'ENSMUSG00000053640' => 'predicted gene 9915',
'ENSMUSG00000060424' => 'POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1',
'ENSMUSG00000060679' => 'mitochondrial ribosomal protein S9',
'ENSMUSG00000077448' => 'predicted gene, 23126',
'ENSMUSG00000093436' => 'predicted gene 20646',
'ENSMUSG00000097063' => 'POU domain, class 3, transcription factor 3 adjacent noncoding transcript 2',
'ENSMUSG00000099784' => 'predicted gene 28525',
'ENSMUSG00000100178' => 'predicted gene 5267',
'ENSMUSG00000100180' => 'predicted gene 28140',
'ENSMUSG00000100185' => 'predicted gene 28634',
'ENSMUSG00000100832' => 'predicted gene 29260',
'ENSMUSG00000101299' => 'predicted gene 28175',
'ENSMUSG00000101877' => 'predicted gene 8176',
'ENSMUSG00000101919' => 'predicted gene 29664',
'ENSDARG00000061505' => 'mitochondrial ribosomal protein S9',
'ENSDARG00000095896' => 'POU class 3 homeobox 3b',
'ENSDARG00000097482' => 'si:ch73-30b17.2',
'ENSDARG00000097534' => 'si:ch73-30b17.3'
)
$gene_name_arr = array(
'ENSG00000135972' => 'MRPS9',
'ENSG00000198914' => 'POU3F3',
'ENSG00000199727' => 'U3',
'ENSG00000207249' => 'SNORA72',
'ENSG00000213301' => 'HMGB3P11',
'ENSG00000221654' => 'AC013402.1',
'ENSG00000221849' => 'AC018880.1',
'ENSG00000224095' => 'AC108051.1',
'ENSG00000224509' => 'AC010884.1',
'ENSG00000224850' => 'AC108051.3',
'ENSG00000225669' => 'AC068535.5',
'ENSG00000225765' => 'AC068535.3',
'ENSG00000227157' => 'AC068535.2',
'ENSG00000227623' => 'AC073987.2',
'ENSG00000227680' => 'AC108051.2',
'ENSG00000228528' => 'AC068057.1',
'ENSG00000228968' => 'AC096554.1',
'ENSG00000229209' => 'AC073987.1',
'ENSG00000229743' => 'LINC01159',
'ENSG00000230690' => 'AC013402.5',
'ENSG00000231626' => 'AC013402.4',
'ENSG00000231723' => 'AC018880.2',
'ENSG00000232597' => 'AC013727.1',
'ENSG00000233639' => 'LINC01158',
'ENSG00000233955' => 'AHCYP3',
'ENSG00000234177' => 'LINC01114',
'ENSG00000234781' => 'LINC01103',
'ENSG00000235597' => 'LINC01102',
'ENSG00000236109' => 'AC013402.3',
'ENSG00000236141' => 'AC013727.2',
'ENSG00000236596' => 'AC092568.1',
'ENSG00000239587' => 'AC018730.4',
'ENSG00000256637' => 'RP11-76I14.1',
'ENSG00000263685' => 'AC010884.2',
'ENSG00000269707' => 'RP11-13J10.1',
'ENSG00000273515' => 'DAOA-AS1_2',
'ENSG00000279904' => 'CTD-2015C24.1',
'ENSMUSG00000045515' => 'Pou3f3',
'ENSMUSG00000053640' => 'Gm9915',
'ENSMUSG00000060424' => 'Pou3f3os',
'ENSMUSG00000060679' => 'Mrps9',
'ENSMUSG00000077448' => 'Gm23126',
'ENSMUSG00000093436' => 'Gm20646',
'ENSMUSG00000097063' => 'Pou3f3os2',
'ENSMUSG00000099784' => 'RP23-114H2.2',
'ENSMUSG00000100178' => 'RP24-177N20.1',
'ENSMUSG00000100180' => 'RP24-421J9.4',
'ENSMUSG00000100185' => 'RP23-59E7.1',
'ENSMUSG00000100832' => 'RP23-176M9.1',
'ENSMUSG00000101299' => 'RP24-421J9.3',
'ENSMUSG00000101877' => 'RP24-177N20.2',
'ENSMUSG00000101919' => 'RP24-421J9.5',
'ENSDARG00000061505' => 'mrps9',
'ENSDARG00000095896' => 'pou3f3b',
'ENSDARG00000097482' => 'si:ch73-30b17.2',
'ENSDARG00000097534' => 'si:ch73-30b17.3'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JQ_0001',
'tax_id' => '9606',
'chromosome' => '2',
'seq_start' => '102922366',
'seq_end' => '105081592',
'region_length' => '2159226',
'region_type' => 'UCNEbase',
'el_id' => 'POU3F3'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JQ_0002',
'tax_id' => '10090',
'chromosome' => '1',
'seq_start' => '40943211',
'seq_end' => '42889148',
'region_length' => '1945937',
'region_type' => 'UCNEbase',
'el_id' => 'POU3F3'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JQ_0003',
'tax_id' => '7955',
'chromosome' => '6',
'seq_start' => '14247110',
'seq_end' => '14906260',
'region_length' => '659150',
'region_type' => 'UCNEbase',
'el_id' => 'POU3F3'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JQ_0004',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '6929236',
'seq_end' => '6929391',
'region_length' => '155',
'region_type' => 'UCNEbase',
'el_id' => 'POU3F3'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 12 => 'Adrenal',
(int) 21 => 'Bladder',
(int) 37 => 'Brain',
(int) 88 => 'Breast',
(int) 100 => 'Colon',
(int) 116 => 'Heart',
(int) 129 => 'Kidney',
(int) 158 => 'Liver',
(int) 174 => 'Lung',
(int) 187 => 'Muscle',
(int) 197 => 'Ovary',
(int) 220 => 'Placenta',
(int) 233 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 91
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000258455' => array(
'start' => '105037983',
'end' => '105099960',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MRPS9-001'
),
'ENST00000413583' => array(
'start' => '105089018',
'end' => '105097288',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'MRPS9-002'
),
'ENST00000472220' => array(
'start' => '105092098',
'end' => '105099900',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'MRPS9-003'
),
'ENST00000361360' => array(
'start' => '104855511',
'end' => '104860471',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'POU3F3-001'
),
'ENST00000362857' => array(
'start' => '104532773',
'end' => '104532985',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'U3.1-203'
),
'ENST00000384520' => array(
'start' => '104733234',
'end' => '104733362',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'SNORA72.1-206'
),
'ENST00000440127' => array(
'start' => '104771282',
'end' => '104771885',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'HMGB3P11-001'
),
'ENST00000408727' => array(
'start' => '104568817',
'end' => '104568920',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC013402.1-201'
),
'ENST00000418898' => array(
'start' => '103527620',
'end' => '103529261',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'AC018880.1-001'
),
'ENST00000431897' => array(
'start' => '102967408',
'end' => '102984429',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC108051.1-001'
),
'ENST00000456519' => array(
'start' => '104936411',
'end' => '105038496',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AC010884.1-001'
),
'ENST00000453878' => array(
'start' => '103011779',
'end' => '103019898',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC108051.3-002'
),
'ENST00000415161' => array(
'start' => '104678223',
'end' => '104678673',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'AC068535.5-001'
),
'ENST00000449772' => array(
'start' => '104412227',
'end' => '104414008',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC068535.3-001'
),
'ENST00000416008' => array(
'start' => '104411201',
'end' => '104415612',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC068535.2-001'
),
'ENST00000433830' => array(
'start' => '103275904',
'end' => '103276138',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'AC073987.2-001'
),
'ENST00000435291' => array(
'start' => '102987323',
'end' => '102988565',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC108051.2-001'
),
'ENST00000453322' => array(
'start' => '104703758',
'end' => '104705509',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC068057.1-001'
),
'ENST00000458182' => array(
'start' => '104125268',
'end' => '104147229',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC096554.1-001'
),
'ENST00000422683' => array(
'start' => '103109759',
'end' => '103176260',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC073987.1-001'
),
'ENST00000433433' => array(
'start' => '104865497',
'end' => '104872452',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01159-001'
),
'ENST00000434764' => array(
'start' => '104869846',
'end' => '104872595',
'transcript_biotype' => 'antisense',
'transcript_name' => 'LINC01159-002'
),
'ENST00000456999' => array(
'start' => '104659337',
'end' => '104664837',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC013402.5-001'
),
'ENST00000424257' => array(
'start' => '104580821',
'end' => '104581890',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC013402.4-001'
),
'ENST00000414265' => array(
'start' => '103623630',
'end' => '103623830',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'AC018880.2-001'
),
'ENST00000455716' => array(
'start' => '103856970',
'end' => '103880209',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC013727.1-001'
),
'ENST00000618581' => array(
'start' => '103856659',
'end' => '103865965',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC013727.1-002'
),
'ENST00000413121' => array(
'start' => '104807572',
'end' => '104851461',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01158-004'
),
'ENST00000443988' => array(
'start' => '104807573',
'end' => '104851453',
'transcript_biotype' => 'antisense',
'transcript_name' => 'LINC01158-002'
),
'ENST00000447876' => array(
'start' => '104807573',
'end' => '104853183',
'transcript_biotype' => 'antisense',
'transcript_name' => 'LINC01158-003'
),
'ENST00000454729' => array(
'start' => '104807577',
'end' => '104851476',
'transcript_biotype' => 'antisense',
'transcript_name' => 'LINC01158-005'
),
'ENST00000458253' => array(
'start' => '104807577',
'end' => '104851458',
'transcript_biotype' => 'antisense',
'transcript_name' => 'LINC01158-001'
),
'ENST00000420053' => array(
'start' => '104395002',
'end' => '104396280',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'AHCYP3-001'
),
'ENST00000421071' => array(
'start' => '104749384',
'end' => '104754875',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01114-003'
),
'ENST00000424321' => array(
'start' => '104746638',
'end' => '104755755',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01114-002'
),
'ENST00000425879' => array(
'start' => '104746640',
'end' => '104757719',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01114-001'
),
'ENST00000430551' => array(
'start' => '104488458',
'end' => '104510509',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01103-001'
),
'ENST00000414442' => array(
'start' => '104434366',
'end' => '104506105',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01102-002'
),
'ENST00000429464' => array(
'start' => '104434362',
'end' => '104507831',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01102-004'
),
'ENST00000447380' => array(
'start' => '104434378',
'end' => '104512757',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01102-003'
),
'ENST00000451400' => array(
'start' => '104433267',
'end' => '104520832',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01102-001'
),
'ENST00000438566' => array(
'start' => '104583152',
'end' => '104585354',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC013402.3-001'
),
'ENST00000447761' => array(
'start' => '103865746',
'end' => '103869688',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC013727.2-001'
),
'ENST00000440950' => array(
'start' => '103494241',
'end' => '103495842',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'AC092568.1-001'
),
'ENST00000454183' => array(
'start' => '104865407',
'end' => '104867496',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AC018730.4-001'
),
'ENST00000412112' => array(
'start' => '104053502',
'end' => '104059256',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-76I14.1-001'
),
'ENST00000537492' => array(
'start' => '103874310',
'end' => '104077604',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-76I14.1-003'
),
'ENST00000544869' => array(
'start' => '103874331',
'end' => '104077778',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-76I14.1-004'
),
'ENST00000545549' => array(
'start' => '104051975',
'end' => '104077523',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-76I14.1-002'
),
'ENST00000609391' => array(
'start' => '104051882',
'end' => '104058336',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-76I14.1-005'
),
'ENST00000579548' => array(
'start' => '104992902',
'end' => '104992980',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC010884.2-201'
),
'ENST00000598623' => array(
'start' => '104853285',
'end' => '104926052',
'transcript_biotype' => 'sense_overlapping',
'transcript_name' => 'RP11-13J10.1-001'
),
'ENST00000614829' => array(
'start' => '103953098',
'end' => '103953284',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'DAOA-AS1_2.1-201'
),
'ENST00000624047' => array(
'start' => '104706612',
'end' => '104707506',
'transcript_biotype' => 'TEC',
'transcript_name' => 'CTD-2015C24.1-001'
),
'ENSMUST00000054883' => array(
'start' => '42695768',
'end' => '42703176',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pou3f3-001'
),
'ENSMUST00000066196' => array(
'start' => '42229726',
'end' => '42231108',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm9915-201'
),
'ENSMUST00000188087' => array(
'start' => '42229727',
'end' => '42231108',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm9915-001'
),
'ENSMUST00000078844' => array(
'start' => '42648378',
'end' => '42666912',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Pou3f3os-201'
),
'ENSMUST00000176052' => array(
'start' => '42648201',
'end' => '42667672',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Pou3f3os-001'
),
'ENSMUST00000176154' => array(
'start' => '42648199',
'end' => '42666991',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Pou3f3os-011'
),
'ENSMUST00000176977' => array(
'start' => '42648200',
'end' => '42651679',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Pou3f3os-003'
),
'ENSMUST00000177136' => array(
'start' => '42693027',
'end' => '42694825',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Pou3f3os-004'
),
'ENSMUST00000180689' => array(
'start' => '42648200',
'end' => '42694825',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Pou3f3os-006'
),
'ENSMUST00000181593' => array(
'start' => '42648200',
'end' => '42693153',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Pou3f3os-007'
),
'ENSMUST00000181660' => array(
'start' => '42590782',
'end' => '42694808',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Pou3f3os-005'
),
'ENSMUST00000181725' => array(
'start' => '42648193',
'end' => '42693128',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Pou3f3os-008'
),
'ENSMUST00000185599' => array(
'start' => '42666852',
'end' => '42694842',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Pou3f3os-009'
),
'ENSMUST00000186656' => array(
'start' => '42648201',
'end' => '42693093',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Pou3f3os-002'
),
'ENSMUST00000188153' => array(
'start' => '42648200',
'end' => '42694825',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Pou3f3os-010'
),
'ENSMUST00000057208' => array(
'start' => '42851233',
'end' => '42905682',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mrps9-002'
),
'ENSMUST00000185376' => array(
'start' => '42851276',
'end' => '42899679',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mrps9-003'
),
'ENSMUST00000185523' => array(
'start' => '42851276',
'end' => '42902013',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mrps9-001'
),
'ENSMUST00000187414' => array(
'start' => '42862514',
'end' => '42899128',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Mrps9-008'
),
'ENSMUST00000188174' => array(
'start' => '42851285',
'end' => '42881931',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Mrps9-005'
),
'ENSMUST00000104260' => array(
'start' => '42866685',
'end' => '42866818',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'Gm23126-201'
),
'ENSMUST00000176807' => array(
'start' => '42694925',
'end' => '42744791',
'transcript_biotype' => 'sense_overlapping',
'transcript_name' => 'Gm20646-001'
),
'ENSMUST00000180589' => array(
'start' => '42707061',
'end' => '42713454',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Pou3f3os2-001'
),
'ENSMUST00000188773' => array(
'start' => '42750712',
'end' => '42752881',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-114H2.2-001'
),
'ENSMUST00000191574' => array(
'start' => '42103289',
'end' => '42104333',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP24-177N20.1-001'
),
'ENSMUST00000190148' => array(
'start' => '42324590',
'end' => '42355937',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP24-421J9.4-001'
),
'ENSMUST00000191087' => array(
'start' => '41526931',
'end' => '41529543',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-59E7.1-001'
),
'ENSMUST00000186391' => array(
'start' => '41781808',
'end' => '41939560',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-176M9.1-001'
),
'ENSMUST00000187227' => array(
'start' => '41918352',
'end' => '41920085',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-176M9.1-002'
),
'ENSMUST00000189138' => array(
'start' => '42261855',
'end' => '42262253',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP24-421J9.3-001'
),
'ENSMUST00000191297' => array(
'start' => '42179290',
'end' => '42180388',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP24-177N20.2-001'
),
'ENSMUST00000191125' => array(
'start' => '42238233',
'end' => '42238695',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP24-421J9.5-001'
),
'ENSDART00000087782' => array(
'start' => '14880881',
'end' => '14927548',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'mrps9-001'
),
'ENSDART00000149202' => array(
'start' => '14850018',
'end' => '14853183',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pou3f3b-001'
),
'ENSDART00000149949' => array(
'start' => '14850010',
'end' => '14853188',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pou3f3b-002'
),
'ENSDART00000157118' => array(
'start' => '14856589',
'end' => '14868157',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch73-30b17.2-001'
),
'ENSDART00000155938' => array(
'start' => '14857668',
'end' => '14860378',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch73-30b17.3-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007JQ_0001' => array(
'genes_in_region' => array(
'ENSG00000135972' => array(
[maximum depth reached]
),
'ENSG00000198914' => array(
[maximum depth reached]
),
'ENSG00000213301' => array(
[maximum depth reached]
),
'ENSG00000221654' => array(
[maximum depth reached]
),
'ENSG00000224095' => array(
[maximum depth reached]
),
'ENSG00000224509' => array(
[maximum depth reached]
),
'ENSG00000224850' => array(
[maximum depth reached]
),
'ENSG00000225669' => array(
[maximum depth reached]
),
'ENSG00000225765' => array(
[maximum depth reached]
),
'ENSG00000227157' => array(
[maximum depth reached]
),
'ENSG00000227680' => array(
[maximum depth reached]
),
'ENSG00000228528' => array(
[maximum depth reached]
),
'ENSG00000229209' => array(
[maximum depth reached]
),
'ENSG00000229743' => array(
[maximum depth reached]
),
'ENSG00000230690' => array(
[maximum depth reached]
),
'ENSG00000231626' => array(
[maximum depth reached]
),
'ENSG00000233639' => array(
[maximum depth reached]
),
'ENSG00000234177' => array(
[maximum depth reached]
),
'ENSG00000234781' => array(
[maximum depth reached]
),
'ENSG00000235597' => array(
[maximum depth reached]
),
'ENSG00000236109' => array(
[maximum depth reached]
),
'ENSG00000236141' => array(
[maximum depth reached]
),
'ENSG00000236596' => array(
[maximum depth reached]
),
'ENSG00000239587' => array(
[maximum depth reached]
),
'ENSG00000256637' => array(
[maximum depth reached]
),
'ENSG00000263685' => array(
[maximum depth reached]
),
'ENSG00000269707' => array(
[maximum depth reached]
),
'ENSG00000279904' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Colon',
(int) 15 => 'Adipose',
(int) 16 => 'Adrenal',
(int) 17 => 'Bladder',
(int) 18 => 'Brain',
(int) 19 => 'Breast',
(int) 20 => 'Colon',
(int) 21 => 'Heart',
(int) 22 => 'Kidney',
(int) 23 => 'Liver',
(int) 24 => 'Lung',
(int) 25 => 'Ovary',
(int) 26 => 'Placenta',
(int) 27 => 'Testis',
(int) 28 => 'Brain',
(int) 29 => 'Brain',
(int) 30 => 'Ovary',
(int) 31 => 'Adrenal',
(int) 32 => 'Bladder',
(int) 33 => 'Brain',
(int) 34 => 'Breast',
(int) 35 => 'Colon',
(int) 36 => 'Kidney',
(int) 37 => 'Ovary',
(int) 38 => 'Placenta',
(int) 39 => 'Testis',
(int) 40 => 'Brain',
(int) 41 => 'Testis',
(int) 42 => 'Colon',
(int) 43 => 'Kidney',
(int) 44 => 'Liver',
(int) 45 => 'Testis',
(int) 46 => 'Brain',
(int) 47 => 'Testis',
(int) 48 => 'Testis',
(int) 49 => 'Brain',
(int) 50 => 'Breast',
(int) 51 => 'Kidney',
(int) 52 => 'Adipose',
(int) 53 => 'Adrenal',
(int) 54 => 'Brain',
(int) 55 => 'Breast',
(int) 56 => 'Colon',
(int) 57 => 'Heart',
(int) 58 => 'Kidney',
(int) 59 => 'Liver',
(int) 60 => 'Lung',
(int) 61 => 'Ovary',
(int) 62 => 'Testis',
(int) 63 => 'Adipose',
(int) 64 => 'Bladder',
(int) 65 => 'Brain',
(int) 66 => 'Kidney',
(int) 67 => 'Testis',
(int) 68 => 'Adipose',
(int) 69 => 'Bladder',
(int) 70 => 'Brain',
(int) 71 => 'Testis',
(int) 72 => 'Testis',
(int) 73 => 'Testis',
(int) 74 => 'Testis',
(int) 75 => 'Brain',
(int) 76 => 'Ovary',
(int) 77 => 'Testis',
(int) 78 => 'Brain',
(int) 79 => 'Kidney',
(int) 80 => 'Ovary',
(int) 81 => 'Adipose',
(int) 82 => 'Bladder',
(int) 83 => 'Brain',
(int) 84 => 'Colon',
(int) 85 => 'Heart',
(int) 86 => 'Kidney',
(int) 87 => 'Lung',
(int) 88 => 'Ovary',
(int) 89 => 'Kidney',
(int) 90 => 'Brain',
(int) 91 => 'Kidney',
(int) 92 => 'Brain',
(int) 93 => 'Colon',
(int) 94 => 'Kidney',
(int) 95 => 'Ovary',
(int) 96 => 'Testis',
(int) 97 => 'Bladder',
(int) 98 => 'Brain',
(int) 99 => 'Breast',
(int) 100 => 'Heart',
(int) 101 => 'Kidney',
(int) 102 => 'Testis',
(int) 103 => 'Brain',
(int) 104 => 'Muscle',
(int) 105 => 'Testis',
(int) 106 => 'Brain',
(int) 107 => 'Brain',
(int) 108 => 'Ovary',
(int) 109 => 'Adipose',
(int) 110 => 'Adrenal',
(int) 111 => 'Brain',
(int) 112 => 'Breast',
(int) 113 => 'Colon',
(int) 114 => 'Heart',
(int) 115 => 'Kidney',
(int) 116 => 'Lung',
(int) 117 => 'Muscle',
(int) 118 => 'Testis',
(int) 119 => 'Brain',
(int) 120 => 'Testis',
(int) 121 => 'Brain',
(int) 122 => 'Testis',
(int) 123 => 'Testis',
(int) 124 => 'Breast',
(int) 125 => 'Testis',
(int) 126 => 'Testis',
(int) 127 => 'Adrenal',
(int) 128 => 'Bladder',
(int) 129 => 'Brain',
(int) 130 => 'Breast',
(int) 131 => 'Heart',
(int) 132 => 'Kidney',
(int) 133 => 'Lung',
(int) 134 => 'Muscle',
(int) 135 => 'Ovary',
(int) 136 => 'Placenta',
(int) 137 => 'Testis',
(int) 138 => 'Testis',
(int) 139 => 'Adipose',
(int) 140 => 'Adrenal',
(int) 141 => 'Brain',
(int) 142 => 'Breast',
(int) 143 => 'Heart',
(int) 144 => 'Kidney',
(int) 145 => 'Ovary',
(int) 146 => 'Testis',
(int) 147 => 'Adipose',
(int) 148 => 'Bladder',
(int) 149 => 'Brain',
(int) 150 => 'Colon',
(int) 151 => 'Testis',
(int) 152 => 'Brain'
)
),
'CIL_0007JQ_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000045515' => array(
[maximum depth reached]
),
'ENSMUSG00000053640' => array(
[maximum depth reached]
),
'ENSMUSG00000060424' => array(
[maximum depth reached]
),
'ENSMUSG00000060679' => array(
[maximum depth reached]
),
'ENSMUSG00000093436' => array(
[maximum depth reached]
),
'ENSMUSG00000097063' => array(
[maximum depth reached]
),
'ENSMUSG00000099784' => array(
[maximum depth reached]
),
'ENSMUSG00000100178' => array(
[maximum depth reached]
),
'ENSMUSG00000100180' => array(
[maximum depth reached]
),
'ENSMUSG00000100185' => array(
[maximum depth reached]
),
'ENSMUSG00000100832' => array(
[maximum depth reached]
),
'ENSMUSG00000101299' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Brain',
(int) 15 => 'Brain',
(int) 16 => 'Brain',
(int) 17 => 'Ovary',
(int) 18 => 'Testis',
(int) 19 => 'Brain',
(int) 20 => 'Colon',
(int) 21 => 'Liver',
(int) 22 => 'Lung',
(int) 23 => 'Ovary',
(int) 24 => 'Liver',
(int) 25 => 'Testis',
(int) 26 => 'Kidney',
(int) 27 => 'Testis',
(int) 28 => 'Bladder',
(int) 29 => 'Brain',
(int) 30 => 'Kidney',
(int) 31 => 'Lung',
(int) 32 => 'Brain',
(int) 33 => 'Colon',
(int) 34 => 'Liver',
(int) 35 => 'Placenta',
(int) 36 => 'Testis',
(int) 37 => 'Brain',
(int) 38 => 'Liver',
(int) 39 => 'Placenta',
(int) 40 => 'Bladder',
(int) 41 => 'Kidney',
(int) 42 => 'Placenta',
(int) 43 => 'Colon',
(int) 44 => 'Liver',
(int) 45 => 'Bladder',
(int) 46 => 'Brain',
(int) 47 => 'Colon',
(int) 48 => 'Kidney',
(int) 49 => 'Liver',
(int) 50 => 'Lung',
(int) 51 => 'Ovary',
(int) 52 => 'Placenta',
(int) 53 => 'Testis',
(int) 54 => 'Adipose',
(int) 55 => 'Adrenal',
(int) 56 => 'Bladder',
(int) 57 => 'Brain',
(int) 58 => 'Breast',
(int) 59 => 'Colon',
(int) 60 => 'Heart',
(int) 61 => 'Kidney',
(int) 62 => 'Liver',
(int) 63 => 'Lung',
(int) 64 => 'Muscle',
(int) 65 => 'Ovary',
(int) 66 => 'Placenta',
(int) 67 => 'Testis',
(int) 68 => 'Brain',
(int) 69 => 'Lung',
(int) 70 => 'Ovary',
(int) 71 => 'Placenta',
(int) 72 => 'Ovary',
(int) 73 => 'Bladder',
(int) 74 => 'Brain',
(int) 75 => 'Kidney',
(int) 76 => 'Liver',
(int) 77 => 'Ovary',
(int) 78 => 'Placenta',
(int) 79 => 'Testis',
(int) 80 => 'Bladder',
(int) 81 => 'Brain',
(int) 82 => 'Testis',
(int) 83 => 'Brain',
(int) 84 => 'Kidney',
(int) 85 => 'Lung',
(int) 86 => 'Brain',
(int) 87 => 'Brain',
(int) 88 => 'Testis',
(int) 89 => 'Adipose',
(int) 90 => 'Brain',
(int) 91 => 'Liver',
(int) 92 => 'Ovary',
(int) 93 => 'Testis',
(int) 94 => 'Brain',
(int) 95 => 'Ovary',
(int) 96 => 'Brain',
(int) 97 => 'Ovary',
(int) 98 => 'Placenta'
)
),
'CIL_0007JQ_0003' => array(
'genes_in_region' => array(
'ENSDARG00000061505' => array(
[maximum depth reached]
),
'ENSDARG00000095896' => array(
[maximum depth reached]
),
'ENSDARG00000097482' => array(
[maximum depth reached]
),
'ENSDARG00000097534' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Kidney',
(int) 7 => 'Muscle',
(int) 8 => 'Brain',
(int) 9 => 'Heart',
(int) 10 => 'Kidney',
(int) 11 => 'Muscle',
(int) 12 => 'Brain',
(int) 13 => 'Kidney',
(int) 14 => 'Liver',
(int) 15 => 'Brain',
(int) 16 => 'Heart',
(int) 17 => 'Kidney',
(int) 18 => 'Muscle'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JQ_0004',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '6929236',
'seq_end' => '6929391',
'region_length' => '155',
'region_type' => 'UCNEbase',
'el_id' => 'POU3F3'
)
)
$gene_el = array(
'ENSDART00000155938' => array(
'Brain' => array(
'average_FPKM' => '0.145',
'stddev_FPKM' => '0.07'
),
'Heart' => array(
'average_FPKM' => '0.120',
'stddev_FPKM' => '0.04'
),
'Kidney' => array(
'average_FPKM' => '0.074',
'stddev_FPKM' => '0.00'
),
'Muscle' => array(
'average_FPKM' => '0.189',
'stddev_FPKM' => '0.00'
)
)
)
$gene_key = 'ENSDARG00000097534'
$is_first = false
$tran_el = array(
'Brain' => array(
'average_FPKM' => '0.145',
'stddev_FPKM' => '0.07'
),
'Heart' => array(
'average_FPKM' => '0.120',
'stddev_FPKM' => '0.04'
),
'Kidney' => array(
'average_FPKM' => '0.074',
'stddev_FPKM' => '0.00'
),
'Muscle' => array(
'average_FPKM' => '0.189',
'stddev_FPKM' => '0.00'
)
)
$tran_key = 'ENSDART00000155938'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007JQ_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007JQ_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007JQ_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000135972' => 'mitochondrial ribosomal protein S9',
'ENSG00000198914' => 'POU class 3 homeobox 3',
'ENSG00000199727' => 'Small nucleolar RNA U3',
'ENSG00000207249' => 'Small nucleolar RNA SNORA72',
'ENSG00000213301' => 'high mobility group box 3 pseudogene 11',
'ENSG00000221654' => null,
'ENSG00000221849' => null,
'ENSG00000224095' => null,
'ENSG00000224509' => null,
'ENSG00000224850' => null,
'ENSG00000225669' => null,
'ENSG00000225765' => null,
'ENSG00000227157' => null,
'ENSG00000227623' => null,
'ENSG00000227680' => null,
'ENSG00000228528' => null,
'ENSG00000228968' => null,
'ENSG00000229209' => null,
'ENSG00000229743' => 'long intergenic non-protein coding RNA 1159',
'ENSG00000230690' => null,
'ENSG00000231626' => null,
'ENSG00000231723' => null,
'ENSG00000232597' => null,
'ENSG00000233639' => 'long intergenic non-protein coding RNA 1158',
'ENSG00000233955' => 'adenosylhomocysteinase pseudogene 3',
'ENSG00000234177' => 'long intergenic non-protein coding RNA 1114',
'ENSG00000234781' => 'long intergenic non-protein coding RNA 1103',
'ENSG00000235597' => 'long intergenic non-protein coding RNA 1102',
'ENSG00000236109' => null,
'ENSG00000236141' => null,
'ENSG00000236596' => null,
'ENSG00000239587' => null,
'ENSG00000256637' => null,
'ENSG00000263685' => null,
'ENSG00000269707' => null,
'ENSG00000273515' => 'DAOA antisense RNA 1 conserved region 2',
'ENSG00000279904' => null,
'ENSMUSG00000045515' => 'POU domain, class 3, transcription factor 3',
'ENSMUSG00000053640' => 'predicted gene 9915',
'ENSMUSG00000060424' => 'POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1',
'ENSMUSG00000060679' => 'mitochondrial ribosomal protein S9',
'ENSMUSG00000077448' => 'predicted gene, 23126',
'ENSMUSG00000093436' => 'predicted gene 20646',
'ENSMUSG00000097063' => 'POU domain, class 3, transcription factor 3 adjacent noncoding transcript 2',
'ENSMUSG00000099784' => 'predicted gene 28525',
'ENSMUSG00000100178' => 'predicted gene 5267',
'ENSMUSG00000100180' => 'predicted gene 28140',
'ENSMUSG00000100185' => 'predicted gene 28634',
'ENSMUSG00000100832' => 'predicted gene 29260',
'ENSMUSG00000101299' => 'predicted gene 28175',
'ENSMUSG00000101877' => 'predicted gene 8176',
'ENSMUSG00000101919' => 'predicted gene 29664',
'ENSDARG00000061505' => 'mitochondrial ribosomal protein S9',
'ENSDARG00000095896' => 'POU class 3 homeobox 3b',
'ENSDARG00000097482' => 'si:ch73-30b17.2',
'ENSDARG00000097534' => 'si:ch73-30b17.3'
),
'gene_name_arr' => array(
'ENSG00000135972' => 'MRPS9',
'ENSG00000198914' => 'POU3F3',
'ENSG00000199727' => 'U3',
'ENSG00000207249' => 'SNORA72',
'ENSG00000213301' => 'HMGB3P11',
'ENSG00000221654' => 'AC013402.1',
'ENSG00000221849' => 'AC018880.1',
'ENSG00000224095' => 'AC108051.1',
'ENSG00000224509' => 'AC010884.1',
'ENSG00000224850' => 'AC108051.3',
'ENSG00000225669' => 'AC068535.5',
'ENSG00000225765' => 'AC068535.3',
'ENSG00000227157' => 'AC068535.2',
'ENSG00000227623' => 'AC073987.2',
'ENSG00000227680' => 'AC108051.2',
'ENSG00000228528' => 'AC068057.1',
'ENSG00000228968' => 'AC096554.1',
'ENSG00000229209' => 'AC073987.1',
'ENSG00000229743' => 'LINC01159',
'ENSG00000230690' => 'AC013402.5',
'ENSG00000231626' => 'AC013402.4',
'ENSG00000231723' => 'AC018880.2',
'ENSG00000232597' => 'AC013727.1',
'ENSG00000233639' => 'LINC01158',
'ENSG00000233955' => 'AHCYP3',
'ENSG00000234177' => 'LINC01114',
'ENSG00000234781' => 'LINC01103',
'ENSG00000235597' => 'LINC01102',
'ENSG00000236109' => 'AC013402.3',
'ENSG00000236141' => 'AC013727.2',
'ENSG00000236596' => 'AC092568.1',
'ENSG00000239587' => 'AC018730.4',
'ENSG00000256637' => 'RP11-76I14.1',
'ENSG00000263685' => 'AC010884.2',
'ENSG00000269707' => 'RP11-13J10.1',
'ENSG00000273515' => 'DAOA-AS1_2',
'ENSG00000279904' => 'CTD-2015C24.1',
'ENSMUSG00000045515' => 'Pou3f3',
'ENSMUSG00000053640' => 'Gm9915',
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'ENSMUSG00000077448' => 'Gm23126',
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),
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(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
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),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
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),
(int) 3 => array(
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[maximum depth reached]
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)
),
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(int) 37 => 'Brain',
(int) 88 => 'Breast',
(int) 100 => 'Colon',
(int) 116 => 'Heart',
(int) 129 => 'Kidney',
(int) 158 => 'Liver',
(int) 174 => 'Lung',
(int) 187 => 'Muscle',
(int) 197 => 'Ovary',
(int) 220 => 'Placenta',
(int) 233 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
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(int) 3 => 'Region Length'
),
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'bwgURI' => '/static/files/GRCh38.77.bb',
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'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
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'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
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'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
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'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
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'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
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),
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),
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),
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),
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),
'ENST00000384520' => array(
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),
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),
'ENST00000408727' => array(
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),
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),
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),
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),
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),
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),
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),
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),
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),
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),
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),
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),
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),
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),
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),
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),
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),
'ENST00000447380' => array(
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),
'ENST00000451400' => array(
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),
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),
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),
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),
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),
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),
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),
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),
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),
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),
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),
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),
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),
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),
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),
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),
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),
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),
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),
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),
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),
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),
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),
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),
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),
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),
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),
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),
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),
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),
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'transcript_name' => 'Mrps9-005'
),
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),
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'transcript_biotype' => 'sense_overlapping',
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),
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),
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),
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),
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),
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),
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),
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'end' => '14868157',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch73-30b17.2-001'
),
'ENSDART00000155938' => array(
'start' => '14857668',
'end' => '14860378',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch73-30b17.3-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007JQ_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007JQ_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007JQ_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007JQ_0001' => array(
'genes_in_region' => array(
'ENSG00000135972' => array(
[maximum depth reached]
),
'ENSG00000198914' => array(
[maximum depth reached]
),
'ENSG00000213301' => array(
[maximum depth reached]
),
'ENSG00000221654' => array(
[maximum depth reached]
),
'ENSG00000224095' => array(
[maximum depth reached]
),
'ENSG00000224509' => array(
[maximum depth reached]
),
'ENSG00000224850' => array(
[maximum depth reached]
),
'ENSG00000225669' => array(
[maximum depth reached]
),
'ENSG00000225765' => array(
[maximum depth reached]
),
'ENSG00000227157' => array(
[maximum depth reached]
),
'ENSG00000227680' => array(
[maximum depth reached]
),
'ENSG00000228528' => array(
[maximum depth reached]
),
'ENSG00000229209' => array(
[maximum depth reached]
),
'ENSG00000229743' => array(
[maximum depth reached]
),
'ENSG00000230690' => array(
[maximum depth reached]
),
'ENSG00000231626' => array(
[maximum depth reached]
),
'ENSG00000233639' => array(
[maximum depth reached]
),
'ENSG00000234177' => array(
[maximum depth reached]
),
'ENSG00000234781' => array(
[maximum depth reached]
),
'ENSG00000235597' => array(
[maximum depth reached]
),
'ENSG00000236109' => array(
[maximum depth reached]
),
'ENSG00000236141' => array(
[maximum depth reached]
),
'ENSG00000236596' => array(
[maximum depth reached]
),
'ENSG00000239587' => array(
[maximum depth reached]
),
'ENSG00000256637' => array(
[maximum depth reached]
),
'ENSG00000263685' => array(
[maximum depth reached]
),
'ENSG00000269707' => array(
[maximum depth reached]
),
'ENSG00000279904' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Colon',
(int) 15 => 'Adipose',
(int) 16 => 'Adrenal',
(int) 17 => 'Bladder',
(int) 18 => 'Brain',
(int) 19 => 'Breast',
(int) 20 => 'Colon',
(int) 21 => 'Heart',
(int) 22 => 'Kidney',
(int) 23 => 'Liver',
(int) 24 => 'Lung',
(int) 25 => 'Ovary',
(int) 26 => 'Placenta',
(int) 27 => 'Testis',
(int) 28 => 'Brain',
(int) 29 => 'Brain',
(int) 30 => 'Ovary',
(int) 31 => 'Adrenal',
(int) 32 => 'Bladder',
(int) 33 => 'Brain',
(int) 34 => 'Breast',
(int) 35 => 'Colon',
(int) 36 => 'Kidney',
(int) 37 => 'Ovary',
(int) 38 => 'Placenta',
(int) 39 => 'Testis',
(int) 40 => 'Brain',
(int) 41 => 'Testis',
(int) 42 => 'Colon',
(int) 43 => 'Kidney',
(int) 44 => 'Liver',
(int) 45 => 'Testis',
(int) 46 => 'Brain',
(int) 47 => 'Testis',
(int) 48 => 'Testis',
(int) 49 => 'Brain',
(int) 50 => 'Breast',
(int) 51 => 'Kidney',
(int) 52 => 'Adipose',
(int) 53 => 'Adrenal',
(int) 54 => 'Brain',
(int) 55 => 'Breast',
(int) 56 => 'Colon',
(int) 57 => 'Heart',
(int) 58 => 'Kidney',
(int) 59 => 'Liver',
(int) 60 => 'Lung',
(int) 61 => 'Ovary',
(int) 62 => 'Testis',
(int) 63 => 'Adipose',
(int) 64 => 'Bladder',
(int) 65 => 'Brain',
(int) 66 => 'Kidney',
(int) 67 => 'Testis',
(int) 68 => 'Adipose',
(int) 69 => 'Bladder',
(int) 70 => 'Brain',
(int) 71 => 'Testis',
(int) 72 => 'Testis',
(int) 73 => 'Testis',
(int) 74 => 'Testis',
(int) 75 => 'Brain',
(int) 76 => 'Ovary',
(int) 77 => 'Testis',
(int) 78 => 'Brain',
(int) 79 => 'Kidney',
(int) 80 => 'Ovary',
(int) 81 => 'Adipose',
(int) 82 => 'Bladder',
(int) 83 => 'Brain',
(int) 84 => 'Colon',
(int) 85 => 'Heart',
(int) 86 => 'Kidney',
(int) 87 => 'Lung',
(int) 88 => 'Ovary',
(int) 89 => 'Kidney',
(int) 90 => 'Brain',
(int) 91 => 'Kidney',
(int) 92 => 'Brain',
(int) 93 => 'Colon',
(int) 94 => 'Kidney',
(int) 95 => 'Ovary',
(int) 96 => 'Testis',
(int) 97 => 'Bladder',
(int) 98 => 'Brain',
(int) 99 => 'Breast',
(int) 100 => 'Heart',
(int) 101 => 'Kidney',
(int) 102 => 'Testis',
(int) 103 => 'Brain',
(int) 104 => 'Muscle',
(int) 105 => 'Testis',
(int) 106 => 'Brain',
(int) 107 => 'Brain',
(int) 108 => 'Ovary',
(int) 109 => 'Adipose',
(int) 110 => 'Adrenal',
(int) 111 => 'Brain',
(int) 112 => 'Breast',
(int) 113 => 'Colon',
(int) 114 => 'Heart',
(int) 115 => 'Kidney',
(int) 116 => 'Lung',
(int) 117 => 'Muscle',
(int) 118 => 'Testis',
(int) 119 => 'Brain',
(int) 120 => 'Testis',
(int) 121 => 'Brain',
(int) 122 => 'Testis',
(int) 123 => 'Testis',
(int) 124 => 'Breast',
(int) 125 => 'Testis',
(int) 126 => 'Testis',
(int) 127 => 'Adrenal',
(int) 128 => 'Bladder',
(int) 129 => 'Brain',
(int) 130 => 'Breast',
(int) 131 => 'Heart',
(int) 132 => 'Kidney',
(int) 133 => 'Lung',
(int) 134 => 'Muscle',
(int) 135 => 'Ovary',
(int) 136 => 'Placenta',
(int) 137 => 'Testis',
(int) 138 => 'Testis',
(int) 139 => 'Adipose',
(int) 140 => 'Adrenal',
(int) 141 => 'Brain',
(int) 142 => 'Breast',
(int) 143 => 'Heart',
(int) 144 => 'Kidney',
(int) 145 => 'Ovary',
(int) 146 => 'Testis',
(int) 147 => 'Adipose',
(int) 148 => 'Bladder',
(int) 149 => 'Brain',
(int) 150 => 'Colon',
(int) 151 => 'Testis',
(int) 152 => 'Brain'
)
),
'CIL_0007JQ_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000045515' => array(
[maximum depth reached]
),
'ENSMUSG00000053640' => array(
[maximum depth reached]
),
'ENSMUSG00000060424' => array(
[maximum depth reached]
),
'ENSMUSG00000060679' => array(
[maximum depth reached]
),
'ENSMUSG00000093436' => array(
[maximum depth reached]
),
'ENSMUSG00000097063' => array(
[maximum depth reached]
),
'ENSMUSG00000099784' => array(
[maximum depth reached]
),
'ENSMUSG00000100178' => array(
[maximum depth reached]
),
'ENSMUSG00000100180' => array(
[maximum depth reached]
),
'ENSMUSG00000100185' => array(
[maximum depth reached]
),
'ENSMUSG00000100832' => array(
[maximum depth reached]
),
'ENSMUSG00000101299' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Brain',
(int) 15 => 'Brain',
(int) 16 => 'Brain',
(int) 17 => 'Ovary',
(int) 18 => 'Testis',
(int) 19 => 'Brain',
(int) 20 => 'Colon',
(int) 21 => 'Liver',
(int) 22 => 'Lung',
(int) 23 => 'Ovary',
(int) 24 => 'Liver',
(int) 25 => 'Testis',
(int) 26 => 'Kidney',
(int) 27 => 'Testis',
(int) 28 => 'Bladder',
(int) 29 => 'Brain',
(int) 30 => 'Kidney',
(int) 31 => 'Lung',
(int) 32 => 'Brain',
(int) 33 => 'Colon',
(int) 34 => 'Liver',
(int) 35 => 'Placenta',
(int) 36 => 'Testis',
(int) 37 => 'Brain',
(int) 38 => 'Liver',
(int) 39 => 'Placenta',
(int) 40 => 'Bladder',
(int) 41 => 'Kidney',
(int) 42 => 'Placenta',
(int) 43 => 'Colon',
(int) 44 => 'Liver',
(int) 45 => 'Bladder',
(int) 46 => 'Brain',
(int) 47 => 'Colon',
(int) 48 => 'Kidney',
(int) 49 => 'Liver',
(int) 50 => 'Lung',
(int) 51 => 'Ovary',
(int) 52 => 'Placenta',
(int) 53 => 'Testis',
(int) 54 => 'Adipose',
(int) 55 => 'Adrenal',
(int) 56 => 'Bladder',
(int) 57 => 'Brain',
(int) 58 => 'Breast',
(int) 59 => 'Colon',
(int) 60 => 'Heart',
(int) 61 => 'Kidney',
(int) 62 => 'Liver',
(int) 63 => 'Lung',
(int) 64 => 'Muscle',
(int) 65 => 'Ovary',
(int) 66 => 'Placenta',
(int) 67 => 'Testis',
(int) 68 => 'Brain',
(int) 69 => 'Lung',
(int) 70 => 'Ovary',
(int) 71 => 'Placenta',
(int) 72 => 'Ovary',
(int) 73 => 'Bladder',
(int) 74 => 'Brain',
(int) 75 => 'Kidney',
(int) 76 => 'Liver',
(int) 77 => 'Ovary',
(int) 78 => 'Placenta',
(int) 79 => 'Testis',
(int) 80 => 'Bladder',
(int) 81 => 'Brain',
(int) 82 => 'Testis',
(int) 83 => 'Brain',
(int) 84 => 'Kidney',
(int) 85 => 'Lung',
(int) 86 => 'Brain',
(int) 87 => 'Brain',
(int) 88 => 'Testis',
(int) 89 => 'Adipose',
(int) 90 => 'Brain',
(int) 91 => 'Liver',
(int) 92 => 'Ovary',
(int) 93 => 'Testis',
(int) 94 => 'Brain',
(int) 95 => 'Ovary',
(int) 96 => 'Brain',
(int) 97 => 'Ovary',
(int) 98 => 'Placenta'
)
),
'CIL_0007JQ_0003' => array(
'genes_in_region' => array(
'ENSDARG00000061505' => array(
[maximum depth reached]
),
'ENSDARG00000095896' => array(
[maximum depth reached]
),
'ENSDARG00000097482' => array(
[maximum depth reached]
),
'ENSDARG00000097534' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Kidney',
(int) 7 => 'Muscle',
(int) 8 => 'Brain',
(int) 9 => 'Heart',
(int) 10 => 'Kidney',
(int) 11 => 'Muscle',
(int) 12 => 'Brain',
(int) 13 => 'Kidney',
(int) 14 => 'Liver',
(int) 15 => 'Brain',
(int) 16 => 'Heart',
(int) 17 => 'Kidney',
(int) 18 => 'Muscle'
)
)
)
$gene_desc_arr = array(
'ENSG00000135972' => 'mitochondrial ribosomal protein S9',
'ENSG00000198914' => 'POU class 3 homeobox 3',
'ENSG00000199727' => 'Small nucleolar RNA U3',
'ENSG00000207249' => 'Small nucleolar RNA SNORA72',
'ENSG00000213301' => 'high mobility group box 3 pseudogene 11',
'ENSG00000221654' => null,
'ENSG00000221849' => null,
'ENSG00000224095' => null,
'ENSG00000224509' => null,
'ENSG00000224850' => null,
'ENSG00000225669' => null,
'ENSG00000225765' => null,
'ENSG00000227157' => null,
'ENSG00000227623' => null,
'ENSG00000227680' => null,
'ENSG00000228528' => null,
'ENSG00000228968' => null,
'ENSG00000229209' => null,
'ENSG00000229743' => 'long intergenic non-protein coding RNA 1159',
'ENSG00000230690' => null,
'ENSG00000231626' => null,
'ENSG00000231723' => null,
'ENSG00000232597' => null,
'ENSG00000233639' => 'long intergenic non-protein coding RNA 1158',
'ENSG00000233955' => 'adenosylhomocysteinase pseudogene 3',
'ENSG00000234177' => 'long intergenic non-protein coding RNA 1114',
'ENSG00000234781' => 'long intergenic non-protein coding RNA 1103',
'ENSG00000235597' => 'long intergenic non-protein coding RNA 1102',
'ENSG00000236109' => null,
'ENSG00000236141' => null,
'ENSG00000236596' => null,
'ENSG00000239587' => null,
'ENSG00000256637' => null,
'ENSG00000263685' => null,
'ENSG00000269707' => null,
'ENSG00000273515' => 'DAOA antisense RNA 1 conserved region 2',
'ENSG00000279904' => null,
'ENSMUSG00000045515' => 'POU domain, class 3, transcription factor 3',
'ENSMUSG00000053640' => 'predicted gene 9915',
'ENSMUSG00000060424' => 'POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1',
'ENSMUSG00000060679' => 'mitochondrial ribosomal protein S9',
'ENSMUSG00000077448' => 'predicted gene, 23126',
'ENSMUSG00000093436' => 'predicted gene 20646',
'ENSMUSG00000097063' => 'POU domain, class 3, transcription factor 3 adjacent noncoding transcript 2',
'ENSMUSG00000099784' => 'predicted gene 28525',
'ENSMUSG00000100178' => 'predicted gene 5267',
'ENSMUSG00000100180' => 'predicted gene 28140',
'ENSMUSG00000100185' => 'predicted gene 28634',
'ENSMUSG00000100832' => 'predicted gene 29260',
'ENSMUSG00000101299' => 'predicted gene 28175',
'ENSMUSG00000101877' => 'predicted gene 8176',
'ENSMUSG00000101919' => 'predicted gene 29664',
'ENSDARG00000061505' => 'mitochondrial ribosomal protein S9',
'ENSDARG00000095896' => 'POU class 3 homeobox 3b',
'ENSDARG00000097482' => 'si:ch73-30b17.2',
'ENSDARG00000097534' => 'si:ch73-30b17.3'
)
$gene_name_arr = array(
'ENSG00000135972' => 'MRPS9',
'ENSG00000198914' => 'POU3F3',
'ENSG00000199727' => 'U3',
'ENSG00000207249' => 'SNORA72',
'ENSG00000213301' => 'HMGB3P11',
'ENSG00000221654' => 'AC013402.1',
'ENSG00000221849' => 'AC018880.1',
'ENSG00000224095' => 'AC108051.1',
'ENSG00000224509' => 'AC010884.1',
'ENSG00000224850' => 'AC108051.3',
'ENSG00000225669' => 'AC068535.5',
'ENSG00000225765' => 'AC068535.3',
'ENSG00000227157' => 'AC068535.2',
'ENSG00000227623' => 'AC073987.2',
'ENSG00000227680' => 'AC108051.2',
'ENSG00000228528' => 'AC068057.1',
'ENSG00000228968' => 'AC096554.1',
'ENSG00000229209' => 'AC073987.1',
'ENSG00000229743' => 'LINC01159',
'ENSG00000230690' => 'AC013402.5',
'ENSG00000231626' => 'AC013402.4',
'ENSG00000231723' => 'AC018880.2',
'ENSG00000232597' => 'AC013727.1',
'ENSG00000233639' => 'LINC01158',
'ENSG00000233955' => 'AHCYP3',
'ENSG00000234177' => 'LINC01114',
'ENSG00000234781' => 'LINC01103',
'ENSG00000235597' => 'LINC01102',
'ENSG00000236109' => 'AC013402.3',
'ENSG00000236141' => 'AC013727.2',
'ENSG00000236596' => 'AC092568.1',
'ENSG00000239587' => 'AC018730.4',
'ENSG00000256637' => 'RP11-76I14.1',
'ENSG00000263685' => 'AC010884.2',
'ENSG00000269707' => 'RP11-13J10.1',
'ENSG00000273515' => 'DAOA-AS1_2',
'ENSG00000279904' => 'CTD-2015C24.1',
'ENSMUSG00000045515' => 'Pou3f3',
'ENSMUSG00000053640' => 'Gm9915',
'ENSMUSG00000060424' => 'Pou3f3os',
'ENSMUSG00000060679' => 'Mrps9',
'ENSMUSG00000077448' => 'Gm23126',
'ENSMUSG00000093436' => 'Gm20646',
'ENSMUSG00000097063' => 'Pou3f3os2',
'ENSMUSG00000099784' => 'RP23-114H2.2',
'ENSMUSG00000100178' => 'RP24-177N20.1',
'ENSMUSG00000100180' => 'RP24-421J9.4',
'ENSMUSG00000100185' => 'RP23-59E7.1',
'ENSMUSG00000100832' => 'RP23-176M9.1',
'ENSMUSG00000101299' => 'RP24-421J9.3',
'ENSMUSG00000101877' => 'RP24-177N20.2',
'ENSMUSG00000101919' => 'RP24-421J9.5',
'ENSDARG00000061505' => 'mrps9',
'ENSDARG00000095896' => 'pou3f3b',
'ENSDARG00000097482' => 'si:ch73-30b17.2',
'ENSDARG00000097534' => 'si:ch73-30b17.3'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JQ_0001',
'tax_id' => '9606',
'chromosome' => '2',
'seq_start' => '102922366',
'seq_end' => '105081592',
'region_length' => '2159226',
'region_type' => 'UCNEbase',
'el_id' => 'POU3F3'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JQ_0002',
'tax_id' => '10090',
'chromosome' => '1',
'seq_start' => '40943211',
'seq_end' => '42889148',
'region_length' => '1945937',
'region_type' => 'UCNEbase',
'el_id' => 'POU3F3'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JQ_0003',
'tax_id' => '7955',
'chromosome' => '6',
'seq_start' => '14247110',
'seq_end' => '14906260',
'region_length' => '659150',
'region_type' => 'UCNEbase',
'el_id' => 'POU3F3'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JQ_0004',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '6929236',
'seq_end' => '6929391',
'region_length' => '155',
'region_type' => 'UCNEbase',
'el_id' => 'POU3F3'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 12 => 'Adrenal',
(int) 21 => 'Bladder',
(int) 37 => 'Brain',
(int) 88 => 'Breast',
(int) 100 => 'Colon',
(int) 116 => 'Heart',
(int) 129 => 'Kidney',
(int) 158 => 'Liver',
(int) 174 => 'Lung',
(int) 187 => 'Muscle',
(int) 197 => 'Ovary',
(int) 220 => 'Placenta',
(int) 233 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 91
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000258455' => array(
'start' => '105037983',
'end' => '105099960',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MRPS9-001'
),
'ENST00000413583' => array(
'start' => '105089018',
'end' => '105097288',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'MRPS9-002'
),
'ENST00000472220' => array(
'start' => '105092098',
'end' => '105099900',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'MRPS9-003'
),
'ENST00000361360' => array(
'start' => '104855511',
'end' => '104860471',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'POU3F3-001'
),
'ENST00000362857' => array(
'start' => '104532773',
'end' => '104532985',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'U3.1-203'
),
'ENST00000384520' => array(
'start' => '104733234',
'end' => '104733362',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'SNORA72.1-206'
),
'ENST00000440127' => array(
'start' => '104771282',
'end' => '104771885',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'HMGB3P11-001'
),
'ENST00000408727' => array(
'start' => '104568817',
'end' => '104568920',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC013402.1-201'
),
'ENST00000418898' => array(
'start' => '103527620',
'end' => '103529261',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'AC018880.1-001'
),
'ENST00000431897' => array(
'start' => '102967408',
'end' => '102984429',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC108051.1-001'
),
'ENST00000456519' => array(
'start' => '104936411',
'end' => '105038496',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AC010884.1-001'
),
'ENST00000453878' => array(
'start' => '103011779',
'end' => '103019898',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC108051.3-002'
),
'ENST00000415161' => array(
'start' => '104678223',
'end' => '104678673',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'AC068535.5-001'
),
'ENST00000449772' => array(
'start' => '104412227',
'end' => '104414008',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC068535.3-001'
),
'ENST00000416008' => array(
'start' => '104411201',
'end' => '104415612',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC068535.2-001'
),
'ENST00000433830' => array(
'start' => '103275904',
'end' => '103276138',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'AC073987.2-001'
),
'ENST00000435291' => array(
'start' => '102987323',
'end' => '102988565',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC108051.2-001'
),
'ENST00000453322' => array(
'start' => '104703758',
'end' => '104705509',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC068057.1-001'
),
'ENST00000458182' => array(
'start' => '104125268',
'end' => '104147229',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC096554.1-001'
),
'ENST00000422683' => array(
'start' => '103109759',
'end' => '103176260',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC073987.1-001'
),
'ENST00000433433' => array(
'start' => '104865497',
'end' => '104872452',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01159-001'
),
'ENST00000434764' => array(
'start' => '104869846',
'end' => '104872595',
'transcript_biotype' => 'antisense',
'transcript_name' => 'LINC01159-002'
),
'ENST00000456999' => array(
'start' => '104659337',
'end' => '104664837',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC013402.5-001'
),
'ENST00000424257' => array(
'start' => '104580821',
'end' => '104581890',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC013402.4-001'
),
'ENST00000414265' => array(
'start' => '103623630',
'end' => '103623830',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'AC018880.2-001'
),
'ENST00000455716' => array(
'start' => '103856970',
'end' => '103880209',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC013727.1-001'
),
'ENST00000618581' => array(
'start' => '103856659',
'end' => '103865965',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC013727.1-002'
),
'ENST00000413121' => array(
'start' => '104807572',
'end' => '104851461',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01158-004'
),
'ENST00000443988' => array(
'start' => '104807573',
'end' => '104851453',
'transcript_biotype' => 'antisense',
'transcript_name' => 'LINC01158-002'
),
'ENST00000447876' => array(
'start' => '104807573',
'end' => '104853183',
'transcript_biotype' => 'antisense',
'transcript_name' => 'LINC01158-003'
),
'ENST00000454729' => array(
'start' => '104807577',
'end' => '104851476',
'transcript_biotype' => 'antisense',
'transcript_name' => 'LINC01158-005'
),
'ENST00000458253' => array(
'start' => '104807577',
'end' => '104851458',
'transcript_biotype' => 'antisense',
'transcript_name' => 'LINC01158-001'
),
'ENST00000420053' => array(
'start' => '104395002',
'end' => '104396280',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'AHCYP3-001'
),
'ENST00000421071' => array(
'start' => '104749384',
'end' => '104754875',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01114-003'
),
'ENST00000424321' => array(
'start' => '104746638',
'end' => '104755755',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01114-002'
),
'ENST00000425879' => array(
'start' => '104746640',
'end' => '104757719',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01114-001'
),
'ENST00000430551' => array(
'start' => '104488458',
'end' => '104510509',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01103-001'
),
'ENST00000414442' => array(
'start' => '104434366',
'end' => '104506105',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01102-002'
),
'ENST00000429464' => array(
'start' => '104434362',
'end' => '104507831',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01102-004'
),
'ENST00000447380' => array(
'start' => '104434378',
'end' => '104512757',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01102-003'
),
'ENST00000451400' => array(
'start' => '104433267',
'end' => '104520832',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01102-001'
),
'ENST00000438566' => array(
'start' => '104583152',
'end' => '104585354',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC013402.3-001'
),
'ENST00000447761' => array(
'start' => '103865746',
'end' => '103869688',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC013727.2-001'
),
'ENST00000440950' => array(
'start' => '103494241',
'end' => '103495842',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'AC092568.1-001'
),
'ENST00000454183' => array(
'start' => '104865407',
'end' => '104867496',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AC018730.4-001'
),
'ENST00000412112' => array(
'start' => '104053502',
'end' => '104059256',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-76I14.1-001'
),
'ENST00000537492' => array(
'start' => '103874310',
'end' => '104077604',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-76I14.1-003'
),
'ENST00000544869' => array(
'start' => '103874331',
'end' => '104077778',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-76I14.1-004'
),
'ENST00000545549' => array(
'start' => '104051975',
'end' => '104077523',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-76I14.1-002'
),
'ENST00000609391' => array(
'start' => '104051882',
'end' => '104058336',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-76I14.1-005'
),
'ENST00000579548' => array(
'start' => '104992902',
'end' => '104992980',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC010884.2-201'
),
'ENST00000598623' => array(
'start' => '104853285',
'end' => '104926052',
'transcript_biotype' => 'sense_overlapping',
'transcript_name' => 'RP11-13J10.1-001'
),
'ENST00000614829' => array(
'start' => '103953098',
'end' => '103953284',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'DAOA-AS1_2.1-201'
),
'ENST00000624047' => array(
'start' => '104706612',
'end' => '104707506',
'transcript_biotype' => 'TEC',
'transcript_name' => 'CTD-2015C24.1-001'
),
'ENSMUST00000054883' => array(
'start' => '42695768',
'end' => '42703176',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pou3f3-001'
),
'ENSMUST00000066196' => array(
'start' => '42229726',
'end' => '42231108',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm9915-201'
),
'ENSMUST00000188087' => array(
'start' => '42229727',
'end' => '42231108',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm9915-001'
),
'ENSMUST00000078844' => array(
'start' => '42648378',
'end' => '42666912',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Pou3f3os-201'
),
'ENSMUST00000176052' => array(
'start' => '42648201',
'end' => '42667672',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Pou3f3os-001'
),
'ENSMUST00000176154' => array(
'start' => '42648199',
'end' => '42666991',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Pou3f3os-011'
),
'ENSMUST00000176977' => array(
'start' => '42648200',
'end' => '42651679',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Pou3f3os-003'
),
'ENSMUST00000177136' => array(
'start' => '42693027',
'end' => '42694825',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Pou3f3os-004'
),
'ENSMUST00000180689' => array(
'start' => '42648200',
'end' => '42694825',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Pou3f3os-006'
),
'ENSMUST00000181593' => array(
'start' => '42648200',
'end' => '42693153',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Pou3f3os-007'
),
'ENSMUST00000181660' => array(
'start' => '42590782',
'end' => '42694808',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Pou3f3os-005'
),
'ENSMUST00000181725' => array(
'start' => '42648193',
'end' => '42693128',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Pou3f3os-008'
),
'ENSMUST00000185599' => array(
'start' => '42666852',
'end' => '42694842',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Pou3f3os-009'
),
'ENSMUST00000186656' => array(
'start' => '42648201',
'end' => '42693093',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Pou3f3os-002'
),
'ENSMUST00000188153' => array(
'start' => '42648200',
'end' => '42694825',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Pou3f3os-010'
),
'ENSMUST00000057208' => array(
'start' => '42851233',
'end' => '42905682',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mrps9-002'
),
'ENSMUST00000185376' => array(
'start' => '42851276',
'end' => '42899679',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mrps9-003'
),
'ENSMUST00000185523' => array(
'start' => '42851276',
'end' => '42902013',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mrps9-001'
),
'ENSMUST00000187414' => array(
'start' => '42862514',
'end' => '42899128',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Mrps9-008'
),
'ENSMUST00000188174' => array(
'start' => '42851285',
'end' => '42881931',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Mrps9-005'
),
'ENSMUST00000104260' => array(
'start' => '42866685',
'end' => '42866818',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'Gm23126-201'
),
'ENSMUST00000176807' => array(
'start' => '42694925',
'end' => '42744791',
'transcript_biotype' => 'sense_overlapping',
'transcript_name' => 'Gm20646-001'
),
'ENSMUST00000180589' => array(
'start' => '42707061',
'end' => '42713454',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Pou3f3os2-001'
),
'ENSMUST00000188773' => array(
'start' => '42750712',
'end' => '42752881',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-114H2.2-001'
),
'ENSMUST00000191574' => array(
'start' => '42103289',
'end' => '42104333',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP24-177N20.1-001'
),
'ENSMUST00000190148' => array(
'start' => '42324590',
'end' => '42355937',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP24-421J9.4-001'
),
'ENSMUST00000191087' => array(
'start' => '41526931',
'end' => '41529543',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-59E7.1-001'
),
'ENSMUST00000186391' => array(
'start' => '41781808',
'end' => '41939560',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-176M9.1-001'
),
'ENSMUST00000187227' => array(
'start' => '41918352',
'end' => '41920085',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-176M9.1-002'
),
'ENSMUST00000189138' => array(
'start' => '42261855',
'end' => '42262253',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP24-421J9.3-001'
),
'ENSMUST00000191297' => array(
'start' => '42179290',
'end' => '42180388',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP24-177N20.2-001'
),
'ENSMUST00000191125' => array(
'start' => '42238233',
'end' => '42238695',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP24-421J9.5-001'
),
'ENSDART00000087782' => array(
'start' => '14880881',
'end' => '14927548',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'mrps9-001'
),
'ENSDART00000149202' => array(
'start' => '14850018',
'end' => '14853183',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pou3f3b-001'
),
'ENSDART00000149949' => array(
'start' => '14850010',
'end' => '14853188',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pou3f3b-002'
),
'ENSDART00000157118' => array(
'start' => '14856589',
'end' => '14868157',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch73-30b17.2-001'
),
'ENSDART00000155938' => array(
'start' => '14857668',
'end' => '14860378',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch73-30b17.3-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007JQ_0001' => array(
'genes_in_region' => array(
'ENSG00000135972' => array(
[maximum depth reached]
),
'ENSG00000198914' => array(
[maximum depth reached]
),
'ENSG00000213301' => array(
[maximum depth reached]
),
'ENSG00000221654' => array(
[maximum depth reached]
),
'ENSG00000224095' => array(
[maximum depth reached]
),
'ENSG00000224509' => array(
[maximum depth reached]
),
'ENSG00000224850' => array(
[maximum depth reached]
),
'ENSG00000225669' => array(
[maximum depth reached]
),
'ENSG00000225765' => array(
[maximum depth reached]
),
'ENSG00000227157' => array(
[maximum depth reached]
),
'ENSG00000227680' => array(
[maximum depth reached]
),
'ENSG00000228528' => array(
[maximum depth reached]
),
'ENSG00000229209' => array(
[maximum depth reached]
),
'ENSG00000229743' => array(
[maximum depth reached]
),
'ENSG00000230690' => array(
[maximum depth reached]
),
'ENSG00000231626' => array(
[maximum depth reached]
),
'ENSG00000233639' => array(
[maximum depth reached]
),
'ENSG00000234177' => array(
[maximum depth reached]
),
'ENSG00000234781' => array(
[maximum depth reached]
),
'ENSG00000235597' => array(
[maximum depth reached]
),
'ENSG00000236109' => array(
[maximum depth reached]
),
'ENSG00000236141' => array(
[maximum depth reached]
),
'ENSG00000236596' => array(
[maximum depth reached]
),
'ENSG00000239587' => array(
[maximum depth reached]
),
'ENSG00000256637' => array(
[maximum depth reached]
),
'ENSG00000263685' => array(
[maximum depth reached]
),
'ENSG00000269707' => array(
[maximum depth reached]
),
'ENSG00000279904' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Colon',
(int) 15 => 'Adipose',
(int) 16 => 'Adrenal',
(int) 17 => 'Bladder',
(int) 18 => 'Brain',
(int) 19 => 'Breast',
(int) 20 => 'Colon',
(int) 21 => 'Heart',
(int) 22 => 'Kidney',
(int) 23 => 'Liver',
(int) 24 => 'Lung',
(int) 25 => 'Ovary',
(int) 26 => 'Placenta',
(int) 27 => 'Testis',
(int) 28 => 'Brain',
(int) 29 => 'Brain',
(int) 30 => 'Ovary',
(int) 31 => 'Adrenal',
(int) 32 => 'Bladder',
(int) 33 => 'Brain',
(int) 34 => 'Breast',
(int) 35 => 'Colon',
(int) 36 => 'Kidney',
(int) 37 => 'Ovary',
(int) 38 => 'Placenta',
(int) 39 => 'Testis',
(int) 40 => 'Brain',
(int) 41 => 'Testis',
(int) 42 => 'Colon',
(int) 43 => 'Kidney',
(int) 44 => 'Liver',
(int) 45 => 'Testis',
(int) 46 => 'Brain',
(int) 47 => 'Testis',
(int) 48 => 'Testis',
(int) 49 => 'Brain',
(int) 50 => 'Breast',
(int) 51 => 'Kidney',
(int) 52 => 'Adipose',
(int) 53 => 'Adrenal',
(int) 54 => 'Brain',
(int) 55 => 'Breast',
(int) 56 => 'Colon',
(int) 57 => 'Heart',
(int) 58 => 'Kidney',
(int) 59 => 'Liver',
(int) 60 => 'Lung',
(int) 61 => 'Ovary',
(int) 62 => 'Testis',
(int) 63 => 'Adipose',
(int) 64 => 'Bladder',
(int) 65 => 'Brain',
(int) 66 => 'Kidney',
(int) 67 => 'Testis',
(int) 68 => 'Adipose',
(int) 69 => 'Bladder',
(int) 70 => 'Brain',
(int) 71 => 'Testis',
(int) 72 => 'Testis',
(int) 73 => 'Testis',
(int) 74 => 'Testis',
(int) 75 => 'Brain',
(int) 76 => 'Ovary',
(int) 77 => 'Testis',
(int) 78 => 'Brain',
(int) 79 => 'Kidney',
(int) 80 => 'Ovary',
(int) 81 => 'Adipose',
(int) 82 => 'Bladder',
(int) 83 => 'Brain',
(int) 84 => 'Colon',
(int) 85 => 'Heart',
(int) 86 => 'Kidney',
(int) 87 => 'Lung',
(int) 88 => 'Ovary',
(int) 89 => 'Kidney',
(int) 90 => 'Brain',
(int) 91 => 'Kidney',
(int) 92 => 'Brain',
(int) 93 => 'Colon',
(int) 94 => 'Kidney',
(int) 95 => 'Ovary',
(int) 96 => 'Testis',
(int) 97 => 'Bladder',
(int) 98 => 'Brain',
(int) 99 => 'Breast',
(int) 100 => 'Heart',
(int) 101 => 'Kidney',
(int) 102 => 'Testis',
(int) 103 => 'Brain',
(int) 104 => 'Muscle',
(int) 105 => 'Testis',
(int) 106 => 'Brain',
(int) 107 => 'Brain',
(int) 108 => 'Ovary',
(int) 109 => 'Adipose',
(int) 110 => 'Adrenal',
(int) 111 => 'Brain',
(int) 112 => 'Breast',
(int) 113 => 'Colon',
(int) 114 => 'Heart',
(int) 115 => 'Kidney',
(int) 116 => 'Lung',
(int) 117 => 'Muscle',
(int) 118 => 'Testis',
(int) 119 => 'Brain',
(int) 120 => 'Testis',
(int) 121 => 'Brain',
(int) 122 => 'Testis',
(int) 123 => 'Testis',
(int) 124 => 'Breast',
(int) 125 => 'Testis',
(int) 126 => 'Testis',
(int) 127 => 'Adrenal',
(int) 128 => 'Bladder',
(int) 129 => 'Brain',
(int) 130 => 'Breast',
(int) 131 => 'Heart',
(int) 132 => 'Kidney',
(int) 133 => 'Lung',
(int) 134 => 'Muscle',
(int) 135 => 'Ovary',
(int) 136 => 'Placenta',
(int) 137 => 'Testis',
(int) 138 => 'Testis',
(int) 139 => 'Adipose',
(int) 140 => 'Adrenal',
(int) 141 => 'Brain',
(int) 142 => 'Breast',
(int) 143 => 'Heart',
(int) 144 => 'Kidney',
(int) 145 => 'Ovary',
(int) 146 => 'Testis',
(int) 147 => 'Adipose',
(int) 148 => 'Bladder',
(int) 149 => 'Brain',
(int) 150 => 'Colon',
(int) 151 => 'Testis',
(int) 152 => 'Brain'
)
),
'CIL_0007JQ_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000045515' => array(
[maximum depth reached]
),
'ENSMUSG00000053640' => array(
[maximum depth reached]
),
'ENSMUSG00000060424' => array(
[maximum depth reached]
),
'ENSMUSG00000060679' => array(
[maximum depth reached]
),
'ENSMUSG00000093436' => array(
[maximum depth reached]
),
'ENSMUSG00000097063' => array(
[maximum depth reached]
),
'ENSMUSG00000099784' => array(
[maximum depth reached]
),
'ENSMUSG00000100178' => array(
[maximum depth reached]
),
'ENSMUSG00000100180' => array(
[maximum depth reached]
),
'ENSMUSG00000100185' => array(
[maximum depth reached]
),
'ENSMUSG00000100832' => array(
[maximum depth reached]
),
'ENSMUSG00000101299' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Brain',
(int) 15 => 'Brain',
(int) 16 => 'Brain',
(int) 17 => 'Ovary',
(int) 18 => 'Testis',
(int) 19 => 'Brain',
(int) 20 => 'Colon',
(int) 21 => 'Liver',
(int) 22 => 'Lung',
(int) 23 => 'Ovary',
(int) 24 => 'Liver',
(int) 25 => 'Testis',
(int) 26 => 'Kidney',
(int) 27 => 'Testis',
(int) 28 => 'Bladder',
(int) 29 => 'Brain',
(int) 30 => 'Kidney',
(int) 31 => 'Lung',
(int) 32 => 'Brain',
(int) 33 => 'Colon',
(int) 34 => 'Liver',
(int) 35 => 'Placenta',
(int) 36 => 'Testis',
(int) 37 => 'Brain',
(int) 38 => 'Liver',
(int) 39 => 'Placenta',
(int) 40 => 'Bladder',
(int) 41 => 'Kidney',
(int) 42 => 'Placenta',
(int) 43 => 'Colon',
(int) 44 => 'Liver',
(int) 45 => 'Bladder',
(int) 46 => 'Brain',
(int) 47 => 'Colon',
(int) 48 => 'Kidney',
(int) 49 => 'Liver',
(int) 50 => 'Lung',
(int) 51 => 'Ovary',
(int) 52 => 'Placenta',
(int) 53 => 'Testis',
(int) 54 => 'Adipose',
(int) 55 => 'Adrenal',
(int) 56 => 'Bladder',
(int) 57 => 'Brain',
(int) 58 => 'Breast',
(int) 59 => 'Colon',
(int) 60 => 'Heart',
(int) 61 => 'Kidney',
(int) 62 => 'Liver',
(int) 63 => 'Lung',
(int) 64 => 'Muscle',
(int) 65 => 'Ovary',
(int) 66 => 'Placenta',
(int) 67 => 'Testis',
(int) 68 => 'Brain',
(int) 69 => 'Lung',
(int) 70 => 'Ovary',
(int) 71 => 'Placenta',
(int) 72 => 'Ovary',
(int) 73 => 'Bladder',
(int) 74 => 'Brain',
(int) 75 => 'Kidney',
(int) 76 => 'Liver',
(int) 77 => 'Ovary',
(int) 78 => 'Placenta',
(int) 79 => 'Testis',
(int) 80 => 'Bladder',
(int) 81 => 'Brain',
(int) 82 => 'Testis',
(int) 83 => 'Brain',
(int) 84 => 'Kidney',
(int) 85 => 'Lung',
(int) 86 => 'Brain',
(int) 87 => 'Brain',
(int) 88 => 'Testis',
(int) 89 => 'Adipose',
(int) 90 => 'Brain',
(int) 91 => 'Liver',
(int) 92 => 'Ovary',
(int) 93 => 'Testis',
(int) 94 => 'Brain',
(int) 95 => 'Ovary',
(int) 96 => 'Brain',
(int) 97 => 'Ovary',
(int) 98 => 'Placenta'
)
),
'CIL_0007JQ_0003' => array(
'genes_in_region' => array(
'ENSDARG00000061505' => array(
[maximum depth reached]
),
'ENSDARG00000095896' => array(
[maximum depth reached]
),
'ENSDARG00000097482' => array(
[maximum depth reached]
),
'ENSDARG00000097534' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Kidney',
(int) 7 => 'Muscle',
(int) 8 => 'Brain',
(int) 9 => 'Heart',
(int) 10 => 'Kidney',
(int) 11 => 'Muscle',
(int) 12 => 'Brain',
(int) 13 => 'Kidney',
(int) 14 => 'Liver',
(int) 15 => 'Brain',
(int) 16 => 'Heart',
(int) 17 => 'Kidney',
(int) 18 => 'Muscle'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JQ_0004',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '6929236',
'seq_end' => '6929391',
'region_length' => '155',
'region_type' => 'UCNEbase',
'el_id' => 'POU3F3'
)
)
$gene_el = array(
'ENSDART00000155938' => array(
'Brain' => array(
'average_FPKM' => '0.145',
'stddev_FPKM' => '0.07'
),
'Heart' => array(
'average_FPKM' => '0.120',
'stddev_FPKM' => '0.04'
),
'Kidney' => array(
'average_FPKM' => '0.074',
'stddev_FPKM' => '0.00'
),
'Muscle' => array(
'average_FPKM' => '0.189',
'stddev_FPKM' => '0.00'
)
)
)
$gene_key = 'ENSDARG00000097534'
$is_first = false
$tran_el = array(
'Brain' => array(
'average_FPKM' => '0.145',
'stddev_FPKM' => '0.07'
),
'Heart' => array(
'average_FPKM' => '0.120',
'stddev_FPKM' => '0.04'
),
'Kidney' => array(
'average_FPKM' => '0.074',
'stddev_FPKM' => '0.00'
),
'Muscle' => array(
'average_FPKM' => '0.189',
'stddev_FPKM' => '0.00'
)
)
$tran_key = 'ENSDART00000155938'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
(MRPS9)