C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008O2_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1121 VISTA 9606 2:104536515-105137711
GeneTranscriptPositionBiotype
ENSG00000135972 (MRPS9)
mitochondrial ribosomal protein S9 		ENST00000258455 (MRPS9-001) 105037983-105099960 protein_coding
ENST00000413583 (MRPS9-002) 105089018-105097288 nonsense_mediated_decay
ENST00000472220 (MRPS9-003) 105092098-105099900 retained_intron
ENSG00000198914 (POU3F3)
POU class 3 homeobox 3 		ENST00000361360 (POU3F3-001) 104855511-104860471 protein_coding
ENSG00000213301 (HMGB3P11)
high mobility group box 3 pseudogene 11 		ENST00000440127 (HMGB3P11-001) 104771282-104771885 processed_pseudogene
ENSG00000221654 (AC013402.1)
 ENST00000408727 (AC013402.1-201) 104568817-104568920 miRNA
ENSG00000224509 (AC010884.1)
 ENST00000456519 (AC010884.1-001) 104936411-105038496 antisense
ENSG00000225669 (AC068535.5)
 ENST00000415161 (AC068535.5-001) 104678223-104678673 processed_pseudogene
ENSG00000228528 (AC068057.1)
 ENST00000453322 (AC068057.1-001) 104703758-104705509 lincRNA
ENSG00000229743 (LINC01159)
long intergenic non-protein coding RNA 1159 		ENST00000433433 (LINC01159-001) 104865497-104872452 lincRNA
ENST00000434764 (LINC01159-002) 104869846-104872595 antisense
ENSG00000230690 (AC013402.5)
 ENST00000456999 (AC013402.5-001) 104659337-104664837 lincRNA
ENSG00000231626 (AC013402.4)
 ENST00000424257 (AC013402.4-001) 104580821-104581890 lincRNA
ENSG00000231851 (AC104655.2)
 ENST00000432211 (AC104655.2-001) 105097052-105098637 antisense
ENST00000449177 (AC104655.2-002) 105097060-105102944 antisense
ENSG00000233639 (LINC01158)
long intergenic non-protein coding RNA 1158 		ENST00000413121 (LINC01158-004) 104807572-104851461 lincRNA
ENST00000443988 (LINC01158-002) 104807573-104851453 antisense
ENST00000447876 (LINC01158-003) 104807573-104853183 antisense
ENST00000454729 (LINC01158-005) 104807577-104851476 antisense
ENST00000458253 (LINC01158-001) 104807577-104851458 antisense
ENSG00000234177 (LINC01114)
long intergenic non-protein coding RNA 1114 		ENST00000421071 (LINC01114-003) 104749384-104754875 lincRNA
ENST00000424321 (LINC01114-002) 104746638-104755755 lincRNA
ENST00000425879 (LINC01114-001) 104746640-104757719 lincRNA
ENSG00000236109 (AC013402.3)
 ENST00000438566 (AC013402.3-001) 104583152-104585354 lincRNA
ENSG00000239587 (AC018730.4)
 ENST00000454183 (AC018730.4-001) 104865407-104867496 antisense
ENSG00000263685 (AC010884.2)
 ENST00000579548 (AC010884.2-201) 104992902-104992980 miRNA
ENSG00000269707 (RP11-13J10.1)
 ENST00000598623 (RP11-13J10.1-001) 104853285-104926052 sense_overlapping
ENSG00000279904 (CTD-2015C24.1)
 ENST00000624047 (CTD-2015C24.1-001) 104706612-104707506 TEC

Homo sapiens Ensembl (GRCh38)

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CIL_0008O2_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1121 VISTA 10090 1:42378245-42979419
GeneTranscriptPositionBiotype
ENSMUSG00000041907 (Gpr45)
G protein-coupled receptor 45 		ENSMUST00000114761 (Gpr45-201) 43032060-43033605 protein_coding
ENSMUST00000179655 (Gpr45-002) 42953139-43030781 processed_transcript
ENSMUST00000179766 (Gpr45-001) 42952963-43035456 protein_coding
ENSMUST00000187998 (Gpr45-004) 42953182-42953878 processed_transcript
ENSMUST00000188621 (Gpr45-003) 42952872-42955155 processed_transcript
ENSMUSG00000045515 (Pou3f3)
POU domain, class 3, transcription factor 3 		ENSMUST00000054883 (Pou3f3-001) 42695768-42703176 protein_coding
ENSMUSG00000060424 (Pou3f3os)
POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1 		ENSMUST00000078844 (Pou3f3os-201) 42648378-42666912 lincRNA
ENSMUST00000176052 (Pou3f3os-001) 42648201-42667672 lincRNA
ENSMUST00000176154 (Pou3f3os-011) 42648199-42666991 lincRNA
ENSMUST00000176977 (Pou3f3os-003) 42648200-42651679 lincRNA
ENSMUST00000177136 (Pou3f3os-004) 42693027-42694825 lincRNA
ENSMUST00000180689 (Pou3f3os-006) 42648200-42694825 lincRNA
ENSMUST00000181593 (Pou3f3os-007) 42648200-42693153 lincRNA
ENSMUST00000181660 (Pou3f3os-005) 42590782-42694808 lincRNA
ENSMUST00000181725 (Pou3f3os-008) 42648193-42693128 lincRNA
ENSMUST00000185599 (Pou3f3os-009) 42666852-42694842 lincRNA
ENSMUST00000186656 (Pou3f3os-002) 42648201-42693093 lincRNA
ENSMUST00000188153 (Pou3f3os-010) 42648200-42694825 lincRNA
ENSMUSG00000060679 (Mrps9)
mitochondrial ribosomal protein S9 		ENSMUST00000057208 (Mrps9-002) 42851233-42905682 protein_coding
ENSMUST00000185376 (Mrps9-003) 42851276-42899679 processed_transcript
ENSMUST00000185523 (Mrps9-001) 42851276-42902013 processed_transcript
ENSMUST00000187414 (Mrps9-008) 42862514-42899128 retained_intron
ENSMUST00000188174 (Mrps9-005) 42851285-42881931 retained_intron
ENSMUSG00000093436 (Gm20646)
predicted gene 20646 		ENSMUST00000176807 (Gm20646-001) 42694925-42744791 sense_overlapping
ENSMUSG00000097063 (Pou3f3os2)
POU domain, class 3, transcription factor 3 adjacent noncoding transcript 2 		ENSMUST00000180589 (Pou3f3os2-001) 42707061-42713454 lincRNA
ENSMUSG00000099784 (RP23-114H2.2)
predicted gene 28525 		ENSMUST00000188773 (RP23-114H2.2-001) 42750712-42752881 lincRNA

Mus musculus Ensembl (GRCm38)

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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008O2_0001ENSG00000135972ENST00000258455ENST00000413583ENST00000472220ENSG00000198914ENST00000361360ENSG00000213301ENST00000440127ENSG00000221654ENST00000408727ENSG00000224509ENST00000456519ENSG00000225669ENST00000415161ENSG00000228528ENST00000453322ENSG00000229743ENST00000433433ENST00000434764ENSG00000230690ENST00000456999ENSG00000231626ENST00000424257ENSG00000231851ENST00000432211ENST00000449177ENSG00000233639ENST00000413121ENST00000443988ENST00000447876ENST00000454729ENST00000458253ENSG00000234177ENST00000421071ENST00000424321ENST00000425879ENSG00000236109ENST00000438566ENSG00000239587ENST00000454183ENSG00000263685ENST00000579548ENSG00000269707ENST00000598623ENSG00000279904ENST00000624047CIL_0008O2_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008O2_0001ENSG00000135972ENST00000258455ENST00000472220ENSG00000198914ENST00000361360ENSG00000213301ENST00000440127ENSG00000221654ENST00000408727ENSG00000224509ENST00000456519ENSG00000225669ENST00000415161ENSG00000228528ENST00000453322ENSG00000229743ENST00000433433ENST00000434764ENSG00000230690ENST00000456999ENSG00000231626ENST00000424257ENSG00000231851ENST00000432211ENSG00000233639ENST00000413121ENST00000443988ENST00000447876ENST00000454729ENST00000458253ENSG00000234177ENST00000421071ENST00000424321ENST00000425879ENSG00000236109ENST00000438566ENSG00000239587ENST00000454183ENSG00000263685ENST00000579548ENSG00000269707ENST00000598623ENSG00000279904ENST00000624047CIL_0008O2_0002ENSMUSG00000041907ENSMUST00000114761ENSMUST00000179655ENSMUST00000179766ENSMUST00000187998ENSMUST00000188621ENSMUSG00000045515ENSMUST00000054883ENSMUSG00000060424ENSMUST00000078844ENSMUST00000176052ENSMUST00000176977ENSMUST00000177136ENSMUST00000180689ENSMUST00000181593ENSMUST00000181660ENSMUST00000181725ENSMUST00000185599ENSMUST00000186656ENSMUST00000188153ENSMUSG00000060679ENSMUST00000057208ENSMUST00000185523ENSMUST00000188174ENSMUSG00000093436ENSMUST00000176807ENSMUSG00000097063ENSMUST00000180589ENSMUSG00000099784ENSMUST00000188773
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000135972 ENST00000258455 5.568±0.00 10.005±0.00 3.384±0.00 7.539±1.12 4.819±3.19 6.377±4.23 13.592±6.87 9.394±4.86 5.608±1.52 3.658±0.72 13.215±8.60 16.973±11.53 8.492±3.27 21.515±5.97
ENST00000413583 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472220 N/A N/A N/A N/A N/A 2.039±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000198914 ENST00000361360 0.539±0.00 0.020±0.00 6.904±0.00 7.197±2.17 0.027±0.00 0.267±0.16 0.045±0.00 18.250±0.00 0.149±0.00 0.004±0.00 N/A 0.020±0.01 0.020±0.01 0.987±0.91
ENSG00000213301 ENST00000440127 N/A N/A N/A 0.204±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000221654 ENST00000408727 N/A N/A N/A 1.714±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000224509 ENST00000456519 N/A 0.060±0.00 0.468±0.00 0.544±0.12 0.138±0.04 0.168±0.00 N/A 0.180±0.00 N/A N/A N/A 0.126±0.05 0.100±0.00 0.265±0.11
ENSG00000225669 ENST00000415161 N/A N/A N/A N/A N/A 0.037±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000228528 ENST00000453322 N/A N/A N/A 0.194±0.00 0.018±0.00 N/A N/A 0.145±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000229743 ENST00000433433 0.006±0.00 N/A 0.102±0.00 0.155±0.00 N/A N/A N/A 0.326±0.07 N/A N/A N/A N/A N/A 0.149±0.00
ENST00000434764 0.054±0.00 N/A 0.150±0.00 0.235±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.249±0.00
ENSG00000230690 ENST00000456999 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.872±0.57
ENSG00000231626 ENST00000424257 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.785±0.53
ENSG00000231851 ENST00000432211 3.676±0.00 7.003±0.00 N/A 8.029±0.00 5.724±0.00 5.598±0.00 N/A 9.516±0.00 5.235±0.87 2.169±0.00 10.905±0.00 N/A 4.282±0.00 11.855±0.00
ENST00000449177 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000233639 ENST00000413121 N/A N/A N/A 1.364±0.00 N/A N/A N/A N/A N/A N/A N/A 0.051±0.00 N/A 0.739±0.00
ENST00000443988 N/A N/A N/A 1.500±0.00 N/A N/A N/A 3.295±0.00 N/A N/A N/A 0.040±0.00 N/A N/A
ENST00000447876 0.561±0.00 N/A 0.442±0.00 4.199±3.17 N/A 0.751±0.00 0.020±0.00 3.556±0.00 N/A 0.101±0.00 N/A 0.063±0.00 N/A N/A
ENST00000454729 N/A N/A N/A N/A N/A N/A N/A 1.436±0.00 N/A N/A N/A N/A N/A N/A
ENST00000458253 N/A N/A N/A 0.512±0.00 N/A N/A N/A 1.221±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000234177 ENST00000421071 N/A N/A N/A 0.930±0.00 N/A 0.155±0.00 N/A 0.842±0.00 N/A N/A N/A 0.047±0.00 N/A 0.088±0.00
ENST00000424321 N/A N/A 0.402±0.00 0.186±0.00 0.026±0.00 N/A 0.024±0.00 0.095±0.00 N/A N/A N/A N/A N/A 0.045±0.00
ENST00000425879 N/A N/A N/A 0.383±0.24 N/A N/A N/A N/A N/A N/A 0.235±0.00 N/A N/A 0.034±0.00
ENSG00000236109 ENST00000438566 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.167±0.10
ENSG00000239587 ENST00000454183 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.293±0.00
ENSG00000263685 ENST00000579548 1.066±0.00 5.043±0.00 N/A 0.733±0.00 4.273±0.00 N/A 0.321±0.00 0.691±0.00 N/A N/A N/A 237.535±0.00 N/A 1.934±0.00
ENSG00000269707 ENST00000598623 0.069±0.00 N/A 1.376±0.00 5.869±0.00 N/A 0.148±0.00 N/A N/A N/A N/A N/A N/A N/A 0.142±0.00
ENSG00000279904 ENST00000624047 N/A N/A N/A 0.262±0.14 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000041907 ENSMUST00000114761 N/A 0.073±0.00 N/A 2.855±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.078±0.04
ENSMUST00000179655 N/A N/A N/A N/A N/A N/A N/A N/A 0.020±0.00 N/A N/A N/A N/A 0.027±0.00
ENSMUST00000179766 N/A N/A N/A 1.951±0.99 N/A N/A N/A N/A 0.011±0.01 N/A N/A N/A 0.057±0.00 N/A
ENSMUST00000187998 N/A 0.275±0.18 N/A N/A 0.110±0.07 0.143±0.07 0.118±0.00 0.115±0.03 0.072±0.00 0.085±0.06 N/A 0.418±0.30 0.072±0.00 0.142±0.11
ENSMUST00000188621 0.188±0.14 0.567±0.24 0.152±0.00 2.268±0.25 0.139±0.08 0.195±0.05 0.059±0.01 0.060±0.04 0.055±0.04 0.074±0.03 0.016±0.00 0.184±0.11 0.100±0.12 0.038±0.01
ENSMUSG00000045515 ENSMUST00000054883 0.017±0.01 0.012±0.00 0.104±0.00 24.597±16.91 0.011±0.00 0.368±0.05 0.004±0.00 6.809±0.79 0.024±0.04 0.056±0.01 0.006±0.00 0.216±0.10 0.031±0.02 0.111±0.15
ENSMUSG00000060424 ENSMUST00000078844 N/A N/A N/A 293.503±0.00 N/A N/A N/A N/A N/A N/A N/A 2.050±0.00 N/A 3.360±0.00
ENSMUST00000176052 N/A N/A N/A 19.191±0.00 N/A 0.293±0.00 N/A N/A 0.005±0.00 0.076±0.00 N/A 0.401±0.33 N/A N/A
ENSMUST00000176154 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176977 N/A N/A N/A N/A N/A N/A N/A N/A 0.131±0.00 N/A N/A N/A N/A 0.605±0.22
ENSMUST00000177136 N/A N/A N/A N/A N/A N/A N/A 0.456±0.06 N/A N/A N/A N/A N/A 0.102±0.03
ENSMUST00000180689 N/A N/A 0.074±0.00 11.518±1.93 N/A N/A N/A 4.672±0.80 N/A 0.161±0.00 N/A N/A N/A N/A
ENSMUST00000181593 N/A N/A N/A 10.024±2.97 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000181660 N/A N/A N/A N/A N/A 0.035±0.00 N/A N/A 0.003±0.00 N/A N/A N/A 0.003±0.00 0.031±0.01
ENSMUST00000181725 N/A N/A N/A 19.056±6.33 N/A N/A N/A N/A 0.282±0.00 N/A N/A N/A 0.023±0.00 N/A
ENSMUST00000185599 N/A N/A 0.047±0.00 N/A N/A N/A N/A 2.703±0.85 N/A N/A N/A N/A 0.030±0.00 N/A
ENSMUST00000186656 N/A N/A N/A N/A N/A 0.207±0.00 N/A N/A 0.027±0.00 N/A N/A N/A N/A N/A
ENSMUST00000188153 N/A N/A 0.059±0.03 28.262±12.24 N/A 0.249±0.00 N/A 3.585±1.53 0.082±0.07 0.064±0.00 N/A 0.219±0.14 0.041±0.00 0.543±0.16
ENSMUSG00000060679 ENSMUST00000057208 11.727±1.73 18.154±0.76 15.200±0.82 17.132±5.54 9.751±2.67 13.613±1.43 25.933±4.46 19.492±2.06 14.709±6.12 11.075±1.93 14.818±1.12 14.620±5.78 21.705±6.49 13.714±1.13
ENSMUST00000185376 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000185523 N/A N/A N/A 2.348±0.00 N/A N/A N/A N/A N/A 1.467±0.00 N/A 3.593±0.54 1.491±0.00 N/A
ENSMUST00000187414 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000188174 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.944±0.00 N/A N/A
ENSMUSG00000093436 ENSMUST00000176807 N/A N/A 0.013±0.01 0.767±0.13 N/A N/A N/A 0.359±0.06 0.007±0.00 N/A N/A 0.029±0.00 0.060±0.00 0.046±0.02
ENSMUSG00000097063 ENSMUST00000180589 N/A N/A 0.535±0.00 1.307±0.74 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.092±0.02
ENSMUSG00000099784 ENSMUST00000188773 N/A N/A N/A 0.312±0.09 N/A N/A N/A 0.036±0.02 N/A 0.035±0.00 N/A N/A N/A N/A

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