C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: interferon, alpha 13
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000233816 IFNA13 9606 - 9:21367424-21368962 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000449498 IFNA13-201 21367424-21368057 protein_coding
  ENST00000610660 IFNA13-001 21367424-21368962 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainTestisENST00000449498ENST00000610660
Transcript ID Bladder Brain Testis
ENST00000449498 N/A 0.067±0.00 N/A
ENST00000610660 0.149±0.00 0.020±0.00 0.005±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00056K CIL_00056K_0001 CGP 9:21349835-21368962
CIL_00056K CIL_00056K_0009 CGP 9:21367424-21385388

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002250 IBA adaptive immune response
GO:0002286 IBA T cell activation involved in immune response
GO:0002323 IBA natural killer cell activation involved in immune response
GO:0005125 IBA cytokine activity
GO:0005126 IEA cytokine receptor binding
GO:0005132 IBA type I interferon receptor binding
GO:0005576 TAS:IEA extracellular region
GO:0005615 IBA extracellular space
GO:0006952 IEA defense response
GO:0006959 IBA humoral immune response
GO:0007596 TAS blood coagulation
GO:0019221 IBA cytokine-mediated signaling pathway
GO:0030183 IBA B cell differentiation
GO:0033141 IBA positive regulation of peptidyl-serine phosphorylation of STAT protein
GO:0042100 IBA B cell proliferation
GO:0043330 IBA response to exogenous dsRNA
GO:0045087 IBA innate immune response
GO:0045343 IBA regulation of MHC class I biosynthetic process
GO:0051607 IEA defense response to virus
GO:0060337 TAS type I interferon signaling pathway
GO:0060338 TAS regulation of type I interferon-mediated signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000063376 Ifna13 interferon alpha 13 protein_coding Mus_musculus
ENSMUSG00000070904 Ifna4 interferon alpha 4 protein_coding Mus_musculus
ENSMUSG00000073811 Ifna12 interferon alpha 12 protein_coding Mus_musculus
ENSMUSG00000078354 Ifna2 interferon alpha 2 protein_coding Mus_musculus
ENSMUSG00000078355 Ifna16 interferon alpha 16 protein_coding Mus_musculus
ENSMUSG00000095270 Ifna9 interferon alpha 9 protein_coding Mus_musculus
ENSMUSG00000095498 Ifna1 interferon alpha 1 protein_coding Mus_musculus
ENSMUSG00000095896 Ifna14 interferon alpha 14 protein_coding Mus_musculus
ENSMUSG00000096011 Ifna15 interferon alpha 15 protein_coding Mus_musculus
ENSMUSG00000096682 Ifna5 interferon alpha 5 protein_coding Mus_musculus
ENSMUSG00000100079 Ifnab interferon alpha B protein_coding Mus_musculus
ENSMUSG00000100549 Ifna11 interferon alpha 11 protein_coding Mus_musculus
ENSMUSG00000100713 Ifna7 interferon alpha 7 protein_coding Mus_musculus
ENSMUSG00000101252 Ifna6 interferon alpha 6 protein_coding Mus_musculus

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