Source ID |
Type |
Tax ID |
Position |
ENSG00000214042-ENSG00000186803 |
CGP |
9606 |
9:21201469-21207143 |
Gene | Transcript | Position | Biotype |
Notice (8): Undefined index: CIL_00056K_0007 [APP/View/Region/show.ctp, line 46]Code Context
<tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_00056K_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_0005' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_0006' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_0008' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_0009' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_000A' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_000B' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_000C' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_000D' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_000E' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_000F' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_000G' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_000H' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_000J' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_000K' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_000L' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_000M' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000120235' => 'interferon, alpha 6',
'ENSG00000233816' => 'interferon, alpha 13',
'ENSG00000120242' => 'interferon, alpha 8',
'ENSG00000197919' => 'interferon, alpha 1',
'ENSG00000237691' => 'interferon, omega 1 pseudogene 2',
'ENSG00000137080' => 'interferon, alpha 21',
'ENSG00000232281' => 'interferon, omega 1 pseudogene 15',
'ENSG00000236637' => 'interferon, alpha 4',
'ENSG00000147885' => 'interferon, alpha 16',
'ENSG00000228083' => 'interferon, alpha 14',
'ENSG00000232138' => 'interferon, omega 1 pseudogene 5',
'ENSG00000234829' => 'interferon, alpha 17',
'ENSG00000186803' => 'interferon, alpha 10',
'ENSG00000223684' => 'interferon, omega 1 pseudogene 18',
'ENSG00000188379' => 'interferon, alpha 2',
'ENSG00000231195' => 'interferon, alpha 11, pseudogene',
'ENSG00000235108' => 'interferon, alpha 12, pseudogene',
'ENSG00000261696' => null,
'ENSG00000214042' => 'interferon, alpha 7',
'ENSG00000147873' => 'interferon, alpha 5',
'ENSG00000224416' => 'interferon, alpha 22, pseudogene',
'ENSG00000226597' => 'interferon, omega 1 pseudogene 9',
'ENSMUSG00000063376' => 'interferon alpha 13',
'ENSMUSG00000078355' => 'interferon alpha 16',
'ENSMUSG00000081784' => 'predicted gene 13281',
'ENSMUSG00000070904' => 'interferon alpha 4',
'ENSMUSG00000095498' => 'interferon alpha 1',
'ENSMUSG00000078354' => 'interferon alpha 2',
'ENSMUSG00000100079' => 'interferon alpha B',
'ENSMUSG00000073811' => 'interferon alpha 12',
'ENSMUSG00000078480' => 'mitochondrial ribosomal protein L48 pseudogene',
'ENSMUSG00000095270' => 'interferon alpha 9',
'ENSMUSG00000080964' => 'interferon alpha gene, pseudogene 1',
'ENSMUSG00000095896' => 'interferon alpha 14',
'ENSMUSG00000096011' => 'interferon alpha 15',
'ENSMUSG00000096682' => 'interferon alpha 5',
'ENSMUSG00000100549' => 'interferon alpha 11',
'ENSMUSG00000101252' => 'interferon alpha 6',
'ENSMUSG00000100713' => 'interferon alpha 7'
),
'gene_name_arr' => array(
'ENSG00000120235' => 'IFNA6',
'ENSG00000233816' => 'IFNA13',
'ENSG00000120242' => 'IFNA8',
'ENSG00000197919' => 'IFNA1',
'ENSG00000237691' => 'IFNWP2',
'ENSG00000137080' => 'IFNA21',
'ENSG00000232281' => 'IFNWP15',
'ENSG00000236637' => 'IFNA4',
'ENSG00000147885' => 'IFNA16',
'ENSG00000228083' => 'IFNA14',
'ENSG00000232138' => 'IFNWP5',
'ENSG00000234829' => 'IFNA17',
'ENSG00000186803' => 'IFNA10',
'ENSG00000223684' => 'IFNWP18',
'ENSG00000188379' => 'IFNA2',
'ENSG00000231195' => 'IFNA11P',
'ENSG00000235108' => 'IFNA12P',
'ENSG00000261696' => 'RP11-354P17.15',
'ENSG00000214042' => 'IFNA7',
'ENSG00000147873' => 'IFNA5',
'ENSG00000224416' => 'IFNA22P',
'ENSG00000226597' => 'IFNWP9',
'ENSMUSG00000063376' => 'Ifna13',
'ENSMUSG00000078355' => 'Ifna16',
'ENSMUSG00000081784' => 'Gm13281',
'ENSMUSG00000070904' => 'Ifna4',
'ENSMUSG00000095498' => 'Ifna1',
'ENSMUSG00000078354' => 'Ifna2',
'ENSMUSG00000100079' => 'Ifnab',
'ENSMUSG00000073811' => 'Ifna12',
'ENSMUSG00000078480' => 'Mrpl48-ps',
'ENSMUSG00000095270' => 'Ifna9',
'ENSMUSG00000080964' => 'Ifna-ps1',
'ENSMUSG00000095896' => 'Ifna14',
'ENSMUSG00000096011' => 'Ifna15',
'ENSMUSG00000096682' => 'Ifna5',
'ENSMUSG00000100549' => 'Ifna11',
'ENSMUSG00000101252' => 'Ifna6',
'ENSMUSG00000100713' => 'Ifna7'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 4 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 5 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 6 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 7 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 8 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 9 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 10 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 11 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 12 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 13 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 14 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 15 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 16 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 17 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 18 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 19 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 20 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 21 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 3 => 'Adrenal',
(int) 7 => 'Bladder',
(int) 11 => 'Brain',
(int) 36 => 'Breast',
(int) 38 => 'Colon',
(int) 43 => 'Heart',
(int) 48 => 'Kidney',
(int) 52 => 'Liver',
(int) 56 => 'Lung',
(int) 58 => 'Ovary',
(int) 64 => 'Placenta',
(int) 71 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 79,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000259555' => array(
'start' => '21350253',
'end' => '21350956',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA6-201'
),
'ENST00000380210' => array(
'start' => '21349835',
'end' => '21351378',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA6-001'
),
'ENST00000449498' => array(
'start' => '21367424',
'end' => '21368057',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA13-201'
),
'ENST00000610660' => array(
'start' => '21367424',
'end' => '21368962',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA13-001'
),
'ENST00000380205' => array(
'start' => '21409147',
'end' => '21410185',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA8-001'
),
'ENST00000276927' => array(
'start' => '21440454',
'end' => '21441316',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA1-001'
),
'ENST00000613815' => array(
'start' => '21409169',
'end' => '21441139',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA1-201'
),
'ENST00000431203' => array(
'start' => '21420234',
'end' => '21420813',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'IFNWP2-001'
),
'ENST00000380225' => array(
'start' => '21165637',
'end' => '21166660',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA21-001'
),
'ENST00000442022' => array(
'start' => '21178589',
'end' => '21179188',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'IFNWP15-001'
),
'ENST00000421715' => array(
'start' => '21186694',
'end' => '21187671',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA4-001'
),
'ENST00000380216' => array(
'start' => '21216373',
'end' => '21217311',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA16-001'
),
'ENST00000616765' => array(
'start' => '21216736',
'end' => '21239935',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA16-201'
),
'ENST00000380222' => array(
'start' => '21239002',
'end' => '21239991',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA14-001'
),
'ENST00000445100' => array(
'start' => '21231266',
'end' => '21231853',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'IFNWP5-001'
),
'ENST00000413767' => array(
'start' => '21227243',
'end' => '21228222',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA17-001'
),
'ENST00000619448' => array(
'start' => '21206528',
'end' => '21228173',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA17-201'
),
'ENST00000357374' => array(
'start' => '21206181',
'end' => '21207143',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA10-001'
),
'ENST00000437472' => array(
'start' => '21209189',
'end' => '21209779',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'IFNWP18-001'
),
'ENST00000380206' => array(
'start' => '21384254',
'end' => '21385388',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA2-001'
),
'ENST00000446352' => array(
'start' => '21398614',
'end' => '21399139',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'IFNA11P-001'
),
'ENST00000413147' => array(
'start' => '21403081',
'end' => '21403651',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'IFNA12P-001'
),
'ENST00000569618' => array(
'start' => '21394888',
'end' => '21396346',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-354P17.15-001'
),
'ENST00000239347' => array(
'start' => '21201469',
'end' => '21202205',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA7-001'
),
'ENST00000610521' => array(
'start' => '21304326',
'end' => '21305312',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA5-001'
),
'ENST00000458710' => array(
'start' => '21278050',
'end' => '21278619',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'IFNA22P-001'
),
'ENST00000448683' => array(
'start' => '21190654',
'end' => '21191244',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'IFNWP9-001'
),
'ENSMUST00000072734' => array(
'start' => '88643641',
'end' => '88644459',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ifna13-201'
),
'ENSMUST00000105149' => array(
'start' => '88643641',
'end' => '88644459',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ifna13-001'
),
'ENSMUST00000105148' => array(
'start' => '88675915',
'end' => '88676924',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ifna16-001'
),
'ENSMUST00000120871' => array(
'start' => '88648738',
'end' => '88649304',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'Gm13281-001'
),
'ENSMUST00000094973' => array(
'start' => '88841861',
'end' => '88842421',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ifna4-001'
),
'ENSMUST00000094972' => array(
'start' => '88850087',
'end' => '88850656',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ifna1-001'
),
'ENSMUST00000105147' => array(
'start' => '88682881',
'end' => '88683912',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ifna2-001'
),
'ENSMUST00000071378' => array(
'start' => '88690302',
'end' => '88691359',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ifnab-001'
),
'ENSMUST00000102806' => array(
'start' => '88602580',
'end' => '88603376',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ifna12-001'
),
'ENSMUST00000121413' => array(
'start' => '88599175',
'end' => '88599810',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Mrpl48-ps-001'
),
'ENSMUST00000102807' => array(
'start' => '88591813',
'end' => '88592385',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ifna9-001'
),
'ENSMUST00000119856' => array(
'start' => '88578887',
'end' => '88580574',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'Ifna-ps1-001'
),
'ENSMUST00000102808' => array(
'start' => '88571229',
'end' => '88571798',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ifna14-001'
),
'ENSMUST00000102809' => array(
'start' => '88557673',
'end' => '88558245',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ifna15-001'
),
'ENSMUST00000102804' => array(
'start' => '88835525',
'end' => '88836094',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ifna5-001'
),
'ENSMUST00000170428' => array(
'start' => '88819959',
'end' => '88820531',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ifna11-001'
),
'ENSMUST00000105146' => array(
'start' => '88827416',
'end' => '88827985',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ifna6-001'
),
'ENSMUST00000105143' => array(
'start' => '88816228',
'end' => '88816800',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ifna7-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_00056K_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_0005' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_0006' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_0008' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_0009' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_000A' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_000B' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_000C' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_000D' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_000E' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_000F' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_000G' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_000H' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_000J' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_000K' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_000L' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_000M' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_00056K_0001' => array(
'genes_in_region' => array(
'ENSG00000120235' => array(
[maximum depth reached]
),
'ENSG00000233816' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Testis',
(int) 2 => 'Ovary',
(int) 3 => 'Brain',
(int) 4 => 'Bladder',
(int) 5 => 'Brain',
(int) 6 => 'Testis'
)
),
'CIL_00056K_0002' => array(
'genes_in_region' => array(
'ENSG00000120242' => array(
[maximum depth reached]
),
'ENSG00000197919' => array(
[maximum depth reached]
),
'ENSG00000237691' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Brain',
(int) 2 => 'Kidney',
(int) 3 => 'Brain',
(int) 4 => 'Lung',
(int) 5 => 'Testis'
)
),
'CIL_00056K_0003' => array(
'genes_in_region' => array(
'ENSG00000137080' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Ovary',
(int) 3 => 'Testis'
)
),
'CIL_00056K_0004' => array(
'genes_in_region' => array(
'ENSG00000147885' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain'
)
),
'CIL_00056K_0005' => array(
'genes_in_region' => array(
'ENSG00000147885' => array(
[maximum depth reached]
),
'ENSG00000223684' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Testis'
)
),
'CIL_00056K_0006' => array(
'genes_in_region' => array(
'ENSG00000120242' => array(
[maximum depth reached]
),
'ENSG00000188379' => array(
[maximum depth reached]
),
'ENSG00000197919' => array(
[maximum depth reached]
),
'ENSG00000231195' => array(
[maximum depth reached]
),
'ENSG00000235108' => array(
[maximum depth reached]
),
'ENSG00000261696' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Brain',
(int) 2 => 'Colon',
(int) 3 => 'Testis',
(int) 4 => 'Brain',
(int) 5 => 'Kidney',
(int) 6 => 'Adipose',
(int) 7 => 'Brain',
(int) 8 => 'Heart',
(int) 9 => 'Ovary',
(int) 10 => 'Placenta',
(int) 11 => 'Testis',
(int) 12 => 'Brain',
(int) 13 => 'Testis',
(int) 14 => 'Adipose',
(int) 15 => 'Brain',
(int) 16 => 'Colon',
(int) 17 => 'Placenta',
(int) 18 => 'Testis'
)
),
'CIL_00056K_0008' => array(
'genes_in_region' => array(
'ENSG00000147873' => array(
[maximum depth reached]
),
'ENSG00000147885' => array(
[maximum depth reached]
),
'ENSG00000224416' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Brain',
(int) 2 => 'Colon',
(int) 3 => 'Ovary',
(int) 4 => 'Testis',
(int) 5 => 'Brain',
(int) 6 => 'Adrenal',
(int) 7 => 'Breast',
(int) 8 => 'Placenta'
)
),
'CIL_00056K_0009' => array(
'genes_in_region' => array(
'ENSG00000188379' => array(
[maximum depth reached]
),
'ENSG00000233816' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Colon',
(int) 2 => 'Testis',
(int) 3 => 'Brain',
(int) 4 => 'Bladder',
(int) 5 => 'Brain',
(int) 6 => 'Testis'
)
),
'CIL_00056K_000A' => array(
'genes_in_region' => array(
'ENSG00000147885' => array(
[maximum depth reached]
),
'ENSG00000223684' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Testis'
)
),
'CIL_00056K_000B' => array(
'genes_in_region' => array(
'ENSG00000226597' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain'
)
),
'CIL_00056K_000C' => array(
'genes_in_region' => array(
'ENSMUSG00000063376' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Kidney',
(int) 1 => 'Placenta',
(int) 2 => 'Testis'
)
),
'CIL_00056K_000D' => array(
'genes_in_region' => array(
'ENSMUSG00000070904' => array(
[maximum depth reached]
),
'ENSMUSG00000095498' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Liver',
(int) 1 => 'Placenta'
)
),
'CIL_00056K_000E' => array(
'genes_in_region' => array(
'ENSMUSG00000078354' => array(
[maximum depth reached]
),
'ENSMUSG00000100079' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis',
(int) 1 => 'Brain',
(int) 2 => 'Liver',
(int) 3 => 'Placenta',
(int) 4 => 'Testis'
)
),
'CIL_00056K_000F' => array(
'genes_in_region' => array(
'ENSMUSG00000078354' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis'
)
),
'CIL_00056K_000G' => array(
'genes_in_region' => array(
'ENSMUSG00000073811' => array(
[maximum depth reached]
),
'ENSMUSG00000078480' => array(
[maximum depth reached]
),
'ENSMUSG00000095270' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Ovary',
(int) 1 => 'Adipose',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Ovary',
(int) 10 => 'Placenta',
(int) 11 => 'Testis',
(int) 12 => 'Adrenal'
)
),
'CIL_00056K_000H' => array(
'genes_in_region' => array(
'ENSMUSG00000095270' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal'
)
),
'CIL_00056K_000J' => array(
'genes_in_region' => array(
'ENSMUSG00000070904' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Liver'
)
),
'CIL_00056K_000K' => array(
'genes_in_region' => array(
'ENSMUSG00000101252' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Bladder',
(int) 1 => 'Testis'
)
),
'CIL_00056K_000L' => array(
'genes_in_region' => array(
'ENSMUSG00000100713' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain'
)
),
'CIL_00056K_000M' => array(
'genes_in_region' => array(
'ENSMUSG00000101252' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Bladder',
(int) 1 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSG00000120235' => 'interferon, alpha 6',
'ENSG00000233816' => 'interferon, alpha 13',
'ENSG00000120242' => 'interferon, alpha 8',
'ENSG00000197919' => 'interferon, alpha 1',
'ENSG00000237691' => 'interferon, omega 1 pseudogene 2',
'ENSG00000137080' => 'interferon, alpha 21',
'ENSG00000232281' => 'interferon, omega 1 pseudogene 15',
'ENSG00000236637' => 'interferon, alpha 4',
'ENSG00000147885' => 'interferon, alpha 16',
'ENSG00000228083' => 'interferon, alpha 14',
'ENSG00000232138' => 'interferon, omega 1 pseudogene 5',
'ENSG00000234829' => 'interferon, alpha 17',
'ENSG00000186803' => 'interferon, alpha 10',
'ENSG00000223684' => 'interferon, omega 1 pseudogene 18',
'ENSG00000188379' => 'interferon, alpha 2',
'ENSG00000231195' => 'interferon, alpha 11, pseudogene',
'ENSG00000235108' => 'interferon, alpha 12, pseudogene',
'ENSG00000261696' => null,
'ENSG00000214042' => 'interferon, alpha 7',
'ENSG00000147873' => 'interferon, alpha 5',
'ENSG00000224416' => 'interferon, alpha 22, pseudogene',
'ENSG00000226597' => 'interferon, omega 1 pseudogene 9',
'ENSMUSG00000063376' => 'interferon alpha 13',
'ENSMUSG00000078355' => 'interferon alpha 16',
'ENSMUSG00000081784' => 'predicted gene 13281',
'ENSMUSG00000070904' => 'interferon alpha 4',
'ENSMUSG00000095498' => 'interferon alpha 1',
'ENSMUSG00000078354' => 'interferon alpha 2',
'ENSMUSG00000100079' => 'interferon alpha B',
'ENSMUSG00000073811' => 'interferon alpha 12',
'ENSMUSG00000078480' => 'mitochondrial ribosomal protein L48 pseudogene',
'ENSMUSG00000095270' => 'interferon alpha 9',
'ENSMUSG00000080964' => 'interferon alpha gene, pseudogene 1',
'ENSMUSG00000095896' => 'interferon alpha 14',
'ENSMUSG00000096011' => 'interferon alpha 15',
'ENSMUSG00000096682' => 'interferon alpha 5',
'ENSMUSG00000100549' => 'interferon alpha 11',
'ENSMUSG00000101252' => 'interferon alpha 6',
'ENSMUSG00000100713' => 'interferon alpha 7'
)
$gene_name_arr = array(
'ENSG00000120235' => 'IFNA6',
'ENSG00000233816' => 'IFNA13',
'ENSG00000120242' => 'IFNA8',
'ENSG00000197919' => 'IFNA1',
'ENSG00000237691' => 'IFNWP2',
'ENSG00000137080' => 'IFNA21',
'ENSG00000232281' => 'IFNWP15',
'ENSG00000236637' => 'IFNA4',
'ENSG00000147885' => 'IFNA16',
'ENSG00000228083' => 'IFNA14',
'ENSG00000232138' => 'IFNWP5',
'ENSG00000234829' => 'IFNA17',
'ENSG00000186803' => 'IFNA10',
'ENSG00000223684' => 'IFNWP18',
'ENSG00000188379' => 'IFNA2',
'ENSG00000231195' => 'IFNA11P',
'ENSG00000235108' => 'IFNA12P',
'ENSG00000261696' => 'RP11-354P17.15',
'ENSG00000214042' => 'IFNA7',
'ENSG00000147873' => 'IFNA5',
'ENSG00000224416' => 'IFNA22P',
'ENSG00000226597' => 'IFNWP9',
'ENSMUSG00000063376' => 'Ifna13',
'ENSMUSG00000078355' => 'Ifna16',
'ENSMUSG00000081784' => 'Gm13281',
'ENSMUSG00000070904' => 'Ifna4',
'ENSMUSG00000095498' => 'Ifna1',
'ENSMUSG00000078354' => 'Ifna2',
'ENSMUSG00000100079' => 'Ifnab',
'ENSMUSG00000073811' => 'Ifna12',
'ENSMUSG00000078480' => 'Mrpl48-ps',
'ENSMUSG00000095270' => 'Ifna9',
'ENSMUSG00000080964' => 'Ifna-ps1',
'ENSMUSG00000095896' => 'Ifna14',
'ENSMUSG00000096011' => 'Ifna15',
'ENSMUSG00000096682' => 'Ifna5',
'ENSMUSG00000100549' => 'Ifna11',
'ENSMUSG00000101252' => 'Ifna6',
'ENSMUSG00000100713' => 'Ifna7'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_00056K_0001',
'tax_id' => '9606',
'chromosome' => '9',
'seq_start' => '21349835',
'seq_end' => '21368962',
'region_length' => '19127',
'region_type' => 'CGP',
'el_id' => 'ENSG00000120235-ENSG00000233816'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_00056K_0002',
'tax_id' => '9606',
'chromosome' => '9',
'seq_start' => '21409147',
'seq_end' => '21441316',
'region_length' => '32169',
'region_type' => 'CGP',
'el_id' => 'ENSG00000120242-ENSG00000197919'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_00056K_0003',
'tax_id' => '9606',
'chromosome' => '9',
'seq_start' => '21165637',
'seq_end' => '21187671',
'region_length' => '22034',
'region_type' => 'CGP',
'el_id' => 'ENSG00000137080-ENSG00000236637'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_00056K_0004',
'tax_id' => '9606',
'chromosome' => '9',
'seq_start' => '21216373',
'seq_end' => '21239991',
'region_length' => '23618',
'region_type' => 'CGP',
'el_id' => 'ENSG00000147885-ENSG00000228083'
)
),
(int) 4 => array(
'region_elements' => array(
'region_element_id' => 'CIL_00056K_0005',
'tax_id' => '9606',
'chromosome' => '9',
'seq_start' => '21206181',
'seq_end' => '21228222',
'region_length' => '22041',
'region_type' => 'CGP',
'el_id' => 'ENSG00000186803-ENSG00000234829'
)
),
(int) 5 => array(
'region_elements' => array(
'region_element_id' => 'CIL_00056K_0006',
'tax_id' => '9606',
'chromosome' => '9',
'seq_start' => '21384254',
'seq_end' => '21410185',
'region_length' => '25931',
'region_type' => 'CGP',
'el_id' => 'ENSG00000188379-ENSG00000120242'
)
),
(int) 6 => array(
'region_elements' => array(
'region_element_id' => 'CIL_00056K_0007',
'tax_id' => '9606',
'chromosome' => '9',
'seq_start' => '21201469',
'seq_end' => '21207143',
'region_length' => '5674',
'region_type' => 'CGP',
'el_id' => 'ENSG00000214042-ENSG00000186803'
)
),
(int) 7 => array(
'region_elements' => array(
'region_element_id' => 'CIL_00056K_0008',
'tax_id' => '9606',
'chromosome' => '9',
'seq_start' => '21239002',
'seq_end' => '21305312',
'region_length' => '66310',
'region_type' => 'CGP',
'el_id' => 'ENSG00000228083-ENSG00000147873'
)
),
(int) 8 => array(
'region_elements' => array(
'region_element_id' => 'CIL_00056K_0009',
'tax_id' => '9606',
'chromosome' => '9',
'seq_start' => '21367424',
'seq_end' => '21385388',
'region_length' => '17964',
'region_type' => 'CGP',
'el_id' => 'ENSG00000233816-ENSG00000188379'
)
),
(int) 9 => array(
'region_elements' => array(
'region_element_id' => 'CIL_00056K_000A',
'tax_id' => '9606',
'chromosome' => '9',
'seq_start' => '21206528',
'seq_end' => '21239935',
'region_length' => '33407',
'region_type' => 'CGP',
'el_id' => 'ENSG00000234829-ENSG00000147885'
)
),
(int) 10 => array(
'region_elements' => array(
'region_element_id' => 'CIL_00056K_000B',
'tax_id' => '9606',
'chromosome' => '9',
'seq_start' => '21186694',
'seq_end' => '21202205',
'region_length' => '15511',
'region_type' => 'CGP',
'el_id' => 'ENSG00000236637-ENSG00000214042'
)
),
(int) 11 => array(
'region_elements' => array(
'region_element_id' => 'CIL_00056K_000C',
'tax_id' => '10090',
'chromosome' => '4',
'seq_start' => '88643641',
'seq_end' => '88676924',
'region_length' => '33283',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000063376-ENSMUSG00000078355'
)
),
(int) 12 => array(
'region_elements' => array(
'region_element_id' => 'CIL_00056K_000D',
'tax_id' => '10090',
'chromosome' => '4',
'seq_start' => '88841861',
'seq_end' => '88850656',
'region_length' => '8795',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000070904-ENSMUSG00000095498'
)
),
(int) 13 => array(
'region_elements' => array(
'region_element_id' => 'CIL_00056K_000E',
'tax_id' => '10090',
'chromosome' => '4',
'seq_start' => '88682881',
'seq_end' => '88691359',
'region_length' => '8478',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000078354-ENSMUSG00000100079'
)
),
(int) 14 => array(
'region_elements' => array(
'region_element_id' => 'CIL_00056K_000F',
'tax_id' => '10090',
'chromosome' => '4',
'seq_start' => '88675915',
'seq_end' => '88683912',
'region_length' => '7997',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000078355-ENSMUSG00000078354'
)
),
(int) 15 => array(
'region_elements' => array(
'region_element_id' => 'CIL_00056K_000G',
'tax_id' => '10090',
'chromosome' => '4',
'seq_start' => '88591813',
'seq_end' => '88603376',
'region_length' => '11563',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000095270-ENSMUSG00000073811'
)
),
(int) 16 => array(
'region_elements' => array(
'region_element_id' => 'CIL_00056K_000H',
'tax_id' => '10090',
'chromosome' => '4',
'seq_start' => '88571229',
'seq_end' => '88592385',
'region_length' => '21156',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000095896-ENSMUSG00000095270'
)
),
(int) 17 => array(
'region_elements' => array(
'region_element_id' => 'CIL_00056K_000I',
'tax_id' => '10090',
'chromosome' => '4',
'seq_start' => '88557673',
'seq_end' => '88571798',
'region_length' => '14125',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000096011-ENSMUSG00000095896'
)
),
(int) 18 => array(
'region_elements' => array(
'region_element_id' => 'CIL_00056K_000J',
'tax_id' => '10090',
'chromosome' => '4',
'seq_start' => '88835525',
'seq_end' => '88842421',
'region_length' => '6896',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000096682-ENSMUSG00000070904'
)
),
(int) 19 => array(
'region_elements' => array(
'region_element_id' => 'CIL_00056K_000K',
'tax_id' => '10090',
'chromosome' => '4',
'seq_start' => '88819959',
'seq_end' => '88827985',
'region_length' => '8026',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000100549-ENSMUSG00000101252'
)
),
(int) 20 => array(
'region_elements' => array(
'region_element_id' => 'CIL_00056K_000L',
'tax_id' => '10090',
'chromosome' => '4',
'seq_start' => '88816228',
'seq_end' => '88820531',
'region_length' => '4303',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000100713-ENSMUSG00000100549'
)
),
(int) 21 => array(
'region_elements' => array(
'region_element_id' => 'CIL_00056K_000M',
'tax_id' => '10090',
'chromosome' => '4',
'seq_start' => '88827416',
'seq_end' => '88836094',
'region_length' => '8678',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000101252-ENSMUSG00000096682'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 3 => 'Adrenal',
(int) 7 => 'Bladder',
(int) 11 => 'Brain',
(int) 36 => 'Breast',
(int) 38 => 'Colon',
(int) 43 => 'Heart',
(int) 48 => 'Kidney',
(int) 52 => 'Liver',
(int) 56 => 'Lung',
(int) 58 => 'Ovary',
(int) 64 => 'Placenta',
(int) 71 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 79
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000259555' => array(
'start' => '21350253',
'end' => '21350956',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA6-201'
),
'ENST00000380210' => array(
'start' => '21349835',
'end' => '21351378',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA6-001'
),
'ENST00000449498' => array(
'start' => '21367424',
'end' => '21368057',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA13-201'
),
'ENST00000610660' => array(
'start' => '21367424',
'end' => '21368962',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA13-001'
),
'ENST00000380205' => array(
'start' => '21409147',
'end' => '21410185',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA8-001'
),
'ENST00000276927' => array(
'start' => '21440454',
'end' => '21441316',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA1-001'
),
'ENST00000613815' => array(
'start' => '21409169',
'end' => '21441139',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA1-201'
),
'ENST00000431203' => array(
'start' => '21420234',
'end' => '21420813',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'IFNWP2-001'
),
'ENST00000380225' => array(
'start' => '21165637',
'end' => '21166660',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA21-001'
),
'ENST00000442022' => array(
'start' => '21178589',
'end' => '21179188',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'IFNWP15-001'
),
'ENST00000421715' => array(
'start' => '21186694',
'end' => '21187671',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA4-001'
),
'ENST00000380216' => array(
'start' => '21216373',
'end' => '21217311',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA16-001'
),
'ENST00000616765' => array(
'start' => '21216736',
'end' => '21239935',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA16-201'
),
'ENST00000380222' => array(
'start' => '21239002',
'end' => '21239991',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA14-001'
),
'ENST00000445100' => array(
'start' => '21231266',
'end' => '21231853',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'IFNWP5-001'
),
'ENST00000413767' => array(
'start' => '21227243',
'end' => '21228222',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA17-001'
),
'ENST00000619448' => array(
'start' => '21206528',
'end' => '21228173',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA17-201'
),
'ENST00000357374' => array(
'start' => '21206181',
'end' => '21207143',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA10-001'
),
'ENST00000437472' => array(
'start' => '21209189',
'end' => '21209779',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'IFNWP18-001'
),
'ENST00000380206' => array(
'start' => '21384254',
'end' => '21385388',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA2-001'
),
'ENST00000446352' => array(
'start' => '21398614',
'end' => '21399139',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'IFNA11P-001'
),
'ENST00000413147' => array(
'start' => '21403081',
'end' => '21403651',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'IFNA12P-001'
),
'ENST00000569618' => array(
'start' => '21394888',
'end' => '21396346',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-354P17.15-001'
),
'ENST00000239347' => array(
'start' => '21201469',
'end' => '21202205',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA7-001'
),
'ENST00000610521' => array(
'start' => '21304326',
'end' => '21305312',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA5-001'
),
'ENST00000458710' => array(
'start' => '21278050',
'end' => '21278619',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'IFNA22P-001'
),
'ENST00000448683' => array(
'start' => '21190654',
'end' => '21191244',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'IFNWP9-001'
),
'ENSMUST00000072734' => array(
'start' => '88643641',
'end' => '88644459',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ifna13-201'
),
'ENSMUST00000105149' => array(
'start' => '88643641',
'end' => '88644459',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ifna13-001'
),
'ENSMUST00000105148' => array(
'start' => '88675915',
'end' => '88676924',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ifna16-001'
),
'ENSMUST00000120871' => array(
'start' => '88648738',
'end' => '88649304',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'Gm13281-001'
),
'ENSMUST00000094973' => array(
'start' => '88841861',
'end' => '88842421',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ifna4-001'
),
'ENSMUST00000094972' => array(
'start' => '88850087',
'end' => '88850656',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ifna1-001'
),
'ENSMUST00000105147' => array(
'start' => '88682881',
'end' => '88683912',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ifna2-001'
),
'ENSMUST00000071378' => array(
'start' => '88690302',
'end' => '88691359',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ifnab-001'
),
'ENSMUST00000102806' => array(
'start' => '88602580',
'end' => '88603376',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ifna12-001'
),
'ENSMUST00000121413' => array(
'start' => '88599175',
'end' => '88599810',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Mrpl48-ps-001'
),
'ENSMUST00000102807' => array(
'start' => '88591813',
'end' => '88592385',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ifna9-001'
),
'ENSMUST00000119856' => array(
'start' => '88578887',
'end' => '88580574',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'Ifna-ps1-001'
),
'ENSMUST00000102808' => array(
'start' => '88571229',
'end' => '88571798',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ifna14-001'
),
'ENSMUST00000102809' => array(
'start' => '88557673',
'end' => '88558245',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ifna15-001'
),
'ENSMUST00000102804' => array(
'start' => '88835525',
'end' => '88836094',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ifna5-001'
),
'ENSMUST00000170428' => array(
'start' => '88819959',
'end' => '88820531',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ifna11-001'
),
'ENSMUST00000105146' => array(
'start' => '88827416',
'end' => '88827985',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ifna6-001'
),
'ENSMUST00000105143' => array(
'start' => '88816228',
'end' => '88816800',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ifna7-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_00056K_0001' => array(
'genes_in_region' => array(
'ENSG00000120235' => array(
[maximum depth reached]
),
'ENSG00000233816' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Testis',
(int) 2 => 'Ovary',
(int) 3 => 'Brain',
(int) 4 => 'Bladder',
(int) 5 => 'Brain',
(int) 6 => 'Testis'
)
),
'CIL_00056K_0002' => array(
'genes_in_region' => array(
'ENSG00000120242' => array(
[maximum depth reached]
),
'ENSG00000197919' => array(
[maximum depth reached]
),
'ENSG00000237691' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Brain',
(int) 2 => 'Kidney',
(int) 3 => 'Brain',
(int) 4 => 'Lung',
(int) 5 => 'Testis'
)
),
'CIL_00056K_0003' => array(
'genes_in_region' => array(
'ENSG00000137080' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Ovary',
(int) 3 => 'Testis'
)
),
'CIL_00056K_0004' => array(
'genes_in_region' => array(
'ENSG00000147885' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain'
)
),
'CIL_00056K_0005' => array(
'genes_in_region' => array(
'ENSG00000147885' => array(
[maximum depth reached]
),
'ENSG00000223684' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Testis'
)
),
'CIL_00056K_0006' => array(
'genes_in_region' => array(
'ENSG00000120242' => array(
[maximum depth reached]
),
'ENSG00000188379' => array(
[maximum depth reached]
),
'ENSG00000197919' => array(
[maximum depth reached]
),
'ENSG00000231195' => array(
[maximum depth reached]
),
'ENSG00000235108' => array(
[maximum depth reached]
),
'ENSG00000261696' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Brain',
(int) 2 => 'Colon',
(int) 3 => 'Testis',
(int) 4 => 'Brain',
(int) 5 => 'Kidney',
(int) 6 => 'Adipose',
(int) 7 => 'Brain',
(int) 8 => 'Heart',
(int) 9 => 'Ovary',
(int) 10 => 'Placenta',
(int) 11 => 'Testis',
(int) 12 => 'Brain',
(int) 13 => 'Testis',
(int) 14 => 'Adipose',
(int) 15 => 'Brain',
(int) 16 => 'Colon',
(int) 17 => 'Placenta',
(int) 18 => 'Testis'
)
),
'CIL_00056K_0008' => array(
'genes_in_region' => array(
'ENSG00000147873' => array(
[maximum depth reached]
),
'ENSG00000147885' => array(
[maximum depth reached]
),
'ENSG00000224416' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Brain',
(int) 2 => 'Colon',
(int) 3 => 'Ovary',
(int) 4 => 'Testis',
(int) 5 => 'Brain',
(int) 6 => 'Adrenal',
(int) 7 => 'Breast',
(int) 8 => 'Placenta'
)
),
'CIL_00056K_0009' => array(
'genes_in_region' => array(
'ENSG00000188379' => array(
[maximum depth reached]
),
'ENSG00000233816' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Colon',
(int) 2 => 'Testis',
(int) 3 => 'Brain',
(int) 4 => 'Bladder',
(int) 5 => 'Brain',
(int) 6 => 'Testis'
)
),
'CIL_00056K_000A' => array(
'genes_in_region' => array(
'ENSG00000147885' => array(
[maximum depth reached]
),
'ENSG00000223684' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Testis'
)
),
'CIL_00056K_000B' => array(
'genes_in_region' => array(
'ENSG00000226597' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain'
)
),
'CIL_00056K_000C' => array(
'genes_in_region' => array(
'ENSMUSG00000063376' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Kidney',
(int) 1 => 'Placenta',
(int) 2 => 'Testis'
)
),
'CIL_00056K_000D' => array(
'genes_in_region' => array(
'ENSMUSG00000070904' => array(
[maximum depth reached]
),
'ENSMUSG00000095498' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Liver',
(int) 1 => 'Placenta'
)
),
'CIL_00056K_000E' => array(
'genes_in_region' => array(
'ENSMUSG00000078354' => array(
[maximum depth reached]
),
'ENSMUSG00000100079' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis',
(int) 1 => 'Brain',
(int) 2 => 'Liver',
(int) 3 => 'Placenta',
(int) 4 => 'Testis'
)
),
'CIL_00056K_000F' => array(
'genes_in_region' => array(
'ENSMUSG00000078354' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis'
)
),
'CIL_00056K_000G' => array(
'genes_in_region' => array(
'ENSMUSG00000073811' => array(
[maximum depth reached]
),
'ENSMUSG00000078480' => array(
[maximum depth reached]
),
'ENSMUSG00000095270' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Ovary',
(int) 1 => 'Adipose',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Ovary',
(int) 10 => 'Placenta',
(int) 11 => 'Testis',
(int) 12 => 'Adrenal'
)
),
'CIL_00056K_000H' => array(
'genes_in_region' => array(
'ENSMUSG00000095270' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal'
)
),
'CIL_00056K_000J' => array(
'genes_in_region' => array(
'ENSMUSG00000070904' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Liver'
)
),
'CIL_00056K_000K' => array(
'genes_in_region' => array(
'ENSMUSG00000101252' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Bladder',
(int) 1 => 'Testis'
)
),
'CIL_00056K_000L' => array(
'genes_in_region' => array(
'ENSMUSG00000100713' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain'
)
),
'CIL_00056K_000M' => array(
'genes_in_region' => array(
'ENSMUSG00000101252' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Bladder',
(int) 1 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_00056K_0007',
'tax_id' => '9606',
'chromosome' => '9',
'seq_start' => '21201469',
'seq_end' => '21207143',
'region_length' => '5674',
'region_type' => 'CGP',
'el_id' => 'ENSG00000214042-ENSG00000186803'
)
)
$gene_el = array(
'ENST00000569618' => array(
'Adipose' => array(
'average_FPKM' => '0.021',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.088',
'stddev_FPKM' => '0.02'
),
'Colon' => array(
'average_FPKM' => '0.028',
'stddev_FPKM' => '0.00'
),
'Placenta' => array(
'average_FPKM' => '0.026',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.209',
'stddev_FPKM' => '0.18'
)
)
)
$gene_key = 'ENSG00000261696'
$is_first = false
$tran_el = array(
'Adipose' => array(
'average_FPKM' => '0.021',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.088',
'stddev_FPKM' => '0.02'
),
'Colon' => array(
'average_FPKM' => '0.028',
'stddev_FPKM' => '0.00'
),
'Placenta' => array(
'average_FPKM' => '0.026',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.209',
'stddev_FPKM' => '0.18'
)
)
$tran_key = 'ENST00000569618'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context
<tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_00056K_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_0005' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_0006' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_0008' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_0009' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_000A' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_000B' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_000C' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_000D' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_000E' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_000F' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_000G' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_000H' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_000J' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_000K' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_000L' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_000M' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000120235' => 'interferon, alpha 6',
'ENSG00000233816' => 'interferon, alpha 13',
'ENSG00000120242' => 'interferon, alpha 8',
'ENSG00000197919' => 'interferon, alpha 1',
'ENSG00000237691' => 'interferon, omega 1 pseudogene 2',
'ENSG00000137080' => 'interferon, alpha 21',
'ENSG00000232281' => 'interferon, omega 1 pseudogene 15',
'ENSG00000236637' => 'interferon, alpha 4',
'ENSG00000147885' => 'interferon, alpha 16',
'ENSG00000228083' => 'interferon, alpha 14',
'ENSG00000232138' => 'interferon, omega 1 pseudogene 5',
'ENSG00000234829' => 'interferon, alpha 17',
'ENSG00000186803' => 'interferon, alpha 10',
'ENSG00000223684' => 'interferon, omega 1 pseudogene 18',
'ENSG00000188379' => 'interferon, alpha 2',
'ENSG00000231195' => 'interferon, alpha 11, pseudogene',
'ENSG00000235108' => 'interferon, alpha 12, pseudogene',
'ENSG00000261696' => null,
'ENSG00000214042' => 'interferon, alpha 7',
'ENSG00000147873' => 'interferon, alpha 5',
'ENSG00000224416' => 'interferon, alpha 22, pseudogene',
'ENSG00000226597' => 'interferon, omega 1 pseudogene 9',
'ENSMUSG00000063376' => 'interferon alpha 13',
'ENSMUSG00000078355' => 'interferon alpha 16',
'ENSMUSG00000081784' => 'predicted gene 13281',
'ENSMUSG00000070904' => 'interferon alpha 4',
'ENSMUSG00000095498' => 'interferon alpha 1',
'ENSMUSG00000078354' => 'interferon alpha 2',
'ENSMUSG00000100079' => 'interferon alpha B',
'ENSMUSG00000073811' => 'interferon alpha 12',
'ENSMUSG00000078480' => 'mitochondrial ribosomal protein L48 pseudogene',
'ENSMUSG00000095270' => 'interferon alpha 9',
'ENSMUSG00000080964' => 'interferon alpha gene, pseudogene 1',
'ENSMUSG00000095896' => 'interferon alpha 14',
'ENSMUSG00000096011' => 'interferon alpha 15',
'ENSMUSG00000096682' => 'interferon alpha 5',
'ENSMUSG00000100549' => 'interferon alpha 11',
'ENSMUSG00000101252' => 'interferon alpha 6',
'ENSMUSG00000100713' => 'interferon alpha 7'
),
'gene_name_arr' => array(
'ENSG00000120235' => 'IFNA6',
'ENSG00000233816' => 'IFNA13',
'ENSG00000120242' => 'IFNA8',
'ENSG00000197919' => 'IFNA1',
'ENSG00000237691' => 'IFNWP2',
'ENSG00000137080' => 'IFNA21',
'ENSG00000232281' => 'IFNWP15',
'ENSG00000236637' => 'IFNA4',
'ENSG00000147885' => 'IFNA16',
'ENSG00000228083' => 'IFNA14',
'ENSG00000232138' => 'IFNWP5',
'ENSG00000234829' => 'IFNA17',
'ENSG00000186803' => 'IFNA10',
'ENSG00000223684' => 'IFNWP18',
'ENSG00000188379' => 'IFNA2',
'ENSG00000231195' => 'IFNA11P',
'ENSG00000235108' => 'IFNA12P',
'ENSG00000261696' => 'RP11-354P17.15',
'ENSG00000214042' => 'IFNA7',
'ENSG00000147873' => 'IFNA5',
'ENSG00000224416' => 'IFNA22P',
'ENSG00000226597' => 'IFNWP9',
'ENSMUSG00000063376' => 'Ifna13',
'ENSMUSG00000078355' => 'Ifna16',
'ENSMUSG00000081784' => 'Gm13281',
'ENSMUSG00000070904' => 'Ifna4',
'ENSMUSG00000095498' => 'Ifna1',
'ENSMUSG00000078354' => 'Ifna2',
'ENSMUSG00000100079' => 'Ifnab',
'ENSMUSG00000073811' => 'Ifna12',
'ENSMUSG00000078480' => 'Mrpl48-ps',
'ENSMUSG00000095270' => 'Ifna9',
'ENSMUSG00000080964' => 'Ifna-ps1',
'ENSMUSG00000095896' => 'Ifna14',
'ENSMUSG00000096011' => 'Ifna15',
'ENSMUSG00000096682' => 'Ifna5',
'ENSMUSG00000100549' => 'Ifna11',
'ENSMUSG00000101252' => 'Ifna6',
'ENSMUSG00000100713' => 'Ifna7'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 4 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 5 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 6 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 7 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 8 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 9 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 10 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 11 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 12 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 13 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 14 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 15 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 16 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 17 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 18 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 19 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 20 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 21 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 3 => 'Adrenal',
(int) 7 => 'Bladder',
(int) 11 => 'Brain',
(int) 36 => 'Breast',
(int) 38 => 'Colon',
(int) 43 => 'Heart',
(int) 48 => 'Kidney',
(int) 52 => 'Liver',
(int) 56 => 'Lung',
(int) 58 => 'Ovary',
(int) 64 => 'Placenta',
(int) 71 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 79,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000259555' => array(
'start' => '21350253',
'end' => '21350956',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA6-201'
),
'ENST00000380210' => array(
'start' => '21349835',
'end' => '21351378',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA6-001'
),
'ENST00000449498' => array(
'start' => '21367424',
'end' => '21368057',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA13-201'
),
'ENST00000610660' => array(
'start' => '21367424',
'end' => '21368962',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA13-001'
),
'ENST00000380205' => array(
'start' => '21409147',
'end' => '21410185',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA8-001'
),
'ENST00000276927' => array(
'start' => '21440454',
'end' => '21441316',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA1-001'
),
'ENST00000613815' => array(
'start' => '21409169',
'end' => '21441139',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA1-201'
),
'ENST00000431203' => array(
'start' => '21420234',
'end' => '21420813',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'IFNWP2-001'
),
'ENST00000380225' => array(
'start' => '21165637',
'end' => '21166660',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA21-001'
),
'ENST00000442022' => array(
'start' => '21178589',
'end' => '21179188',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'IFNWP15-001'
),
'ENST00000421715' => array(
'start' => '21186694',
'end' => '21187671',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA4-001'
),
'ENST00000380216' => array(
'start' => '21216373',
'end' => '21217311',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA16-001'
),
'ENST00000616765' => array(
'start' => '21216736',
'end' => '21239935',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA16-201'
),
'ENST00000380222' => array(
'start' => '21239002',
'end' => '21239991',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA14-001'
),
'ENST00000445100' => array(
'start' => '21231266',
'end' => '21231853',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'IFNWP5-001'
),
'ENST00000413767' => array(
'start' => '21227243',
'end' => '21228222',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA17-001'
),
'ENST00000619448' => array(
'start' => '21206528',
'end' => '21228173',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA17-201'
),
'ENST00000357374' => array(
'start' => '21206181',
'end' => '21207143',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA10-001'
),
'ENST00000437472' => array(
'start' => '21209189',
'end' => '21209779',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'IFNWP18-001'
),
'ENST00000380206' => array(
'start' => '21384254',
'end' => '21385388',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA2-001'
),
'ENST00000446352' => array(
'start' => '21398614',
'end' => '21399139',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'IFNA11P-001'
),
'ENST00000413147' => array(
'start' => '21403081',
'end' => '21403651',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'IFNA12P-001'
),
'ENST00000569618' => array(
'start' => '21394888',
'end' => '21396346',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-354P17.15-001'
),
'ENST00000239347' => array(
'start' => '21201469',
'end' => '21202205',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA7-001'
),
'ENST00000610521' => array(
'start' => '21304326',
'end' => '21305312',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA5-001'
),
'ENST00000458710' => array(
'start' => '21278050',
'end' => '21278619',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'IFNA22P-001'
),
'ENST00000448683' => array(
'start' => '21190654',
'end' => '21191244',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'IFNWP9-001'
),
'ENSMUST00000072734' => array(
'start' => '88643641',
'end' => '88644459',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ifna13-201'
),
'ENSMUST00000105149' => array(
'start' => '88643641',
'end' => '88644459',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ifna13-001'
),
'ENSMUST00000105148' => array(
'start' => '88675915',
'end' => '88676924',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ifna16-001'
),
'ENSMUST00000120871' => array(
'start' => '88648738',
'end' => '88649304',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'Gm13281-001'
),
'ENSMUST00000094973' => array(
'start' => '88841861',
'end' => '88842421',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ifna4-001'
),
'ENSMUST00000094972' => array(
'start' => '88850087',
'end' => '88850656',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ifna1-001'
),
'ENSMUST00000105147' => array(
'start' => '88682881',
'end' => '88683912',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ifna2-001'
),
'ENSMUST00000071378' => array(
'start' => '88690302',
'end' => '88691359',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ifnab-001'
),
'ENSMUST00000102806' => array(
'start' => '88602580',
'end' => '88603376',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ifna12-001'
),
'ENSMUST00000121413' => array(
'start' => '88599175',
'end' => '88599810',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Mrpl48-ps-001'
),
'ENSMUST00000102807' => array(
'start' => '88591813',
'end' => '88592385',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ifna9-001'
),
'ENSMUST00000119856' => array(
'start' => '88578887',
'end' => '88580574',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'Ifna-ps1-001'
),
'ENSMUST00000102808' => array(
'start' => '88571229',
'end' => '88571798',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ifna14-001'
),
'ENSMUST00000102809' => array(
'start' => '88557673',
'end' => '88558245',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ifna15-001'
),
'ENSMUST00000102804' => array(
'start' => '88835525',
'end' => '88836094',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ifna5-001'
),
'ENSMUST00000170428' => array(
'start' => '88819959',
'end' => '88820531',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ifna11-001'
),
'ENSMUST00000105146' => array(
'start' => '88827416',
'end' => '88827985',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ifna6-001'
),
'ENSMUST00000105143' => array(
'start' => '88816228',
'end' => '88816800',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ifna7-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_00056K_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_0005' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_0006' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_0008' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_0009' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_000A' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_000B' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_000C' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_000D' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_000E' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_000F' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_000G' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_000H' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_000J' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_000K' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_000L' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_00056K_000M' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_00056K_0001' => array(
'genes_in_region' => array(
'ENSG00000120235' => array(
[maximum depth reached]
),
'ENSG00000233816' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Testis',
(int) 2 => 'Ovary',
(int) 3 => 'Brain',
(int) 4 => 'Bladder',
(int) 5 => 'Brain',
(int) 6 => 'Testis'
)
),
'CIL_00056K_0002' => array(
'genes_in_region' => array(
'ENSG00000120242' => array(
[maximum depth reached]
),
'ENSG00000197919' => array(
[maximum depth reached]
),
'ENSG00000237691' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Brain',
(int) 2 => 'Kidney',
(int) 3 => 'Brain',
(int) 4 => 'Lung',
(int) 5 => 'Testis'
)
),
'CIL_00056K_0003' => array(
'genes_in_region' => array(
'ENSG00000137080' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Ovary',
(int) 3 => 'Testis'
)
),
'CIL_00056K_0004' => array(
'genes_in_region' => array(
'ENSG00000147885' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain'
)
),
'CIL_00056K_0005' => array(
'genes_in_region' => array(
'ENSG00000147885' => array(
[maximum depth reached]
),
'ENSG00000223684' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Testis'
)
),
'CIL_00056K_0006' => array(
'genes_in_region' => array(
'ENSG00000120242' => array(
[maximum depth reached]
),
'ENSG00000188379' => array(
[maximum depth reached]
),
'ENSG00000197919' => array(
[maximum depth reached]
),
'ENSG00000231195' => array(
[maximum depth reached]
),
'ENSG00000235108' => array(
[maximum depth reached]
),
'ENSG00000261696' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Brain',
(int) 2 => 'Colon',
(int) 3 => 'Testis',
(int) 4 => 'Brain',
(int) 5 => 'Kidney',
(int) 6 => 'Adipose',
(int) 7 => 'Brain',
(int) 8 => 'Heart',
(int) 9 => 'Ovary',
(int) 10 => 'Placenta',
(int) 11 => 'Testis',
(int) 12 => 'Brain',
(int) 13 => 'Testis',
(int) 14 => 'Adipose',
(int) 15 => 'Brain',
(int) 16 => 'Colon',
(int) 17 => 'Placenta',
(int) 18 => 'Testis'
)
),
'CIL_00056K_0008' => array(
'genes_in_region' => array(
'ENSG00000147873' => array(
[maximum depth reached]
),
'ENSG00000147885' => array(
[maximum depth reached]
),
'ENSG00000224416' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Brain',
(int) 2 => 'Colon',
(int) 3 => 'Ovary',
(int) 4 => 'Testis',
(int) 5 => 'Brain',
(int) 6 => 'Adrenal',
(int) 7 => 'Breast',
(int) 8 => 'Placenta'
)
),
'CIL_00056K_0009' => array(
'genes_in_region' => array(
'ENSG00000188379' => array(
[maximum depth reached]
),
'ENSG00000233816' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Colon',
(int) 2 => 'Testis',
(int) 3 => 'Brain',
(int) 4 => 'Bladder',
(int) 5 => 'Brain',
(int) 6 => 'Testis'
)
),
'CIL_00056K_000A' => array(
'genes_in_region' => array(
'ENSG00000147885' => array(
[maximum depth reached]
),
'ENSG00000223684' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Testis'
)
),
'CIL_00056K_000B' => array(
'genes_in_region' => array(
'ENSG00000226597' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain'
)
),
'CIL_00056K_000C' => array(
'genes_in_region' => array(
'ENSMUSG00000063376' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Kidney',
(int) 1 => 'Placenta',
(int) 2 => 'Testis'
)
),
'CIL_00056K_000D' => array(
'genes_in_region' => array(
'ENSMUSG00000070904' => array(
[maximum depth reached]
),
'ENSMUSG00000095498' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Liver',
(int) 1 => 'Placenta'
)
),
'CIL_00056K_000E' => array(
'genes_in_region' => array(
'ENSMUSG00000078354' => array(
[maximum depth reached]
),
'ENSMUSG00000100079' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis',
(int) 1 => 'Brain',
(int) 2 => 'Liver',
(int) 3 => 'Placenta',
(int) 4 => 'Testis'
)
),
'CIL_00056K_000F' => array(
'genes_in_region' => array(
'ENSMUSG00000078354' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis'
)
),
'CIL_00056K_000G' => array(
'genes_in_region' => array(
'ENSMUSG00000073811' => array(
[maximum depth reached]
),
'ENSMUSG00000078480' => array(
[maximum depth reached]
),
'ENSMUSG00000095270' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Ovary',
(int) 1 => 'Adipose',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Ovary',
(int) 10 => 'Placenta',
(int) 11 => 'Testis',
(int) 12 => 'Adrenal'
)
),
'CIL_00056K_000H' => array(
'genes_in_region' => array(
'ENSMUSG00000095270' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal'
)
),
'CIL_00056K_000J' => array(
'genes_in_region' => array(
'ENSMUSG00000070904' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Liver'
)
),
'CIL_00056K_000K' => array(
'genes_in_region' => array(
'ENSMUSG00000101252' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Bladder',
(int) 1 => 'Testis'
)
),
'CIL_00056K_000L' => array(
'genes_in_region' => array(
'ENSMUSG00000100713' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain'
)
),
'CIL_00056K_000M' => array(
'genes_in_region' => array(
'ENSMUSG00000101252' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Bladder',
(int) 1 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSG00000120235' => 'interferon, alpha 6',
'ENSG00000233816' => 'interferon, alpha 13',
'ENSG00000120242' => 'interferon, alpha 8',
'ENSG00000197919' => 'interferon, alpha 1',
'ENSG00000237691' => 'interferon, omega 1 pseudogene 2',
'ENSG00000137080' => 'interferon, alpha 21',
'ENSG00000232281' => 'interferon, omega 1 pseudogene 15',
'ENSG00000236637' => 'interferon, alpha 4',
'ENSG00000147885' => 'interferon, alpha 16',
'ENSG00000228083' => 'interferon, alpha 14',
'ENSG00000232138' => 'interferon, omega 1 pseudogene 5',
'ENSG00000234829' => 'interferon, alpha 17',
'ENSG00000186803' => 'interferon, alpha 10',
'ENSG00000223684' => 'interferon, omega 1 pseudogene 18',
'ENSG00000188379' => 'interferon, alpha 2',
'ENSG00000231195' => 'interferon, alpha 11, pseudogene',
'ENSG00000235108' => 'interferon, alpha 12, pseudogene',
'ENSG00000261696' => null,
'ENSG00000214042' => 'interferon, alpha 7',
'ENSG00000147873' => 'interferon, alpha 5',
'ENSG00000224416' => 'interferon, alpha 22, pseudogene',
'ENSG00000226597' => 'interferon, omega 1 pseudogene 9',
'ENSMUSG00000063376' => 'interferon alpha 13',
'ENSMUSG00000078355' => 'interferon alpha 16',
'ENSMUSG00000081784' => 'predicted gene 13281',
'ENSMUSG00000070904' => 'interferon alpha 4',
'ENSMUSG00000095498' => 'interferon alpha 1',
'ENSMUSG00000078354' => 'interferon alpha 2',
'ENSMUSG00000100079' => 'interferon alpha B',
'ENSMUSG00000073811' => 'interferon alpha 12',
'ENSMUSG00000078480' => 'mitochondrial ribosomal protein L48 pseudogene',
'ENSMUSG00000095270' => 'interferon alpha 9',
'ENSMUSG00000080964' => 'interferon alpha gene, pseudogene 1',
'ENSMUSG00000095896' => 'interferon alpha 14',
'ENSMUSG00000096011' => 'interferon alpha 15',
'ENSMUSG00000096682' => 'interferon alpha 5',
'ENSMUSG00000100549' => 'interferon alpha 11',
'ENSMUSG00000101252' => 'interferon alpha 6',
'ENSMUSG00000100713' => 'interferon alpha 7'
)
$gene_name_arr = array(
'ENSG00000120235' => 'IFNA6',
'ENSG00000233816' => 'IFNA13',
'ENSG00000120242' => 'IFNA8',
'ENSG00000197919' => 'IFNA1',
'ENSG00000237691' => 'IFNWP2',
'ENSG00000137080' => 'IFNA21',
'ENSG00000232281' => 'IFNWP15',
'ENSG00000236637' => 'IFNA4',
'ENSG00000147885' => 'IFNA16',
'ENSG00000228083' => 'IFNA14',
'ENSG00000232138' => 'IFNWP5',
'ENSG00000234829' => 'IFNA17',
'ENSG00000186803' => 'IFNA10',
'ENSG00000223684' => 'IFNWP18',
'ENSG00000188379' => 'IFNA2',
'ENSG00000231195' => 'IFNA11P',
'ENSG00000235108' => 'IFNA12P',
'ENSG00000261696' => 'RP11-354P17.15',
'ENSG00000214042' => 'IFNA7',
'ENSG00000147873' => 'IFNA5',
'ENSG00000224416' => 'IFNA22P',
'ENSG00000226597' => 'IFNWP9',
'ENSMUSG00000063376' => 'Ifna13',
'ENSMUSG00000078355' => 'Ifna16',
'ENSMUSG00000081784' => 'Gm13281',
'ENSMUSG00000070904' => 'Ifna4',
'ENSMUSG00000095498' => 'Ifna1',
'ENSMUSG00000078354' => 'Ifna2',
'ENSMUSG00000100079' => 'Ifnab',
'ENSMUSG00000073811' => 'Ifna12',
'ENSMUSG00000078480' => 'Mrpl48-ps',
'ENSMUSG00000095270' => 'Ifna9',
'ENSMUSG00000080964' => 'Ifna-ps1',
'ENSMUSG00000095896' => 'Ifna14',
'ENSMUSG00000096011' => 'Ifna15',
'ENSMUSG00000096682' => 'Ifna5',
'ENSMUSG00000100549' => 'Ifna11',
'ENSMUSG00000101252' => 'Ifna6',
'ENSMUSG00000100713' => 'Ifna7'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_00056K_0001',
'tax_id' => '9606',
'chromosome' => '9',
'seq_start' => '21349835',
'seq_end' => '21368962',
'region_length' => '19127',
'region_type' => 'CGP',
'el_id' => 'ENSG00000120235-ENSG00000233816'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_00056K_0002',
'tax_id' => '9606',
'chromosome' => '9',
'seq_start' => '21409147',
'seq_end' => '21441316',
'region_length' => '32169',
'region_type' => 'CGP',
'el_id' => 'ENSG00000120242-ENSG00000197919'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_00056K_0003',
'tax_id' => '9606',
'chromosome' => '9',
'seq_start' => '21165637',
'seq_end' => '21187671',
'region_length' => '22034',
'region_type' => 'CGP',
'el_id' => 'ENSG00000137080-ENSG00000236637'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_00056K_0004',
'tax_id' => '9606',
'chromosome' => '9',
'seq_start' => '21216373',
'seq_end' => '21239991',
'region_length' => '23618',
'region_type' => 'CGP',
'el_id' => 'ENSG00000147885-ENSG00000228083'
)
),
(int) 4 => array(
'region_elements' => array(
'region_element_id' => 'CIL_00056K_0005',
'tax_id' => '9606',
'chromosome' => '9',
'seq_start' => '21206181',
'seq_end' => '21228222',
'region_length' => '22041',
'region_type' => 'CGP',
'el_id' => 'ENSG00000186803-ENSG00000234829'
)
),
(int) 5 => array(
'region_elements' => array(
'region_element_id' => 'CIL_00056K_0006',
'tax_id' => '9606',
'chromosome' => '9',
'seq_start' => '21384254',
'seq_end' => '21410185',
'region_length' => '25931',
'region_type' => 'CGP',
'el_id' => 'ENSG00000188379-ENSG00000120242'
)
),
(int) 6 => array(
'region_elements' => array(
'region_element_id' => 'CIL_00056K_0007',
'tax_id' => '9606',
'chromosome' => '9',
'seq_start' => '21201469',
'seq_end' => '21207143',
'region_length' => '5674',
'region_type' => 'CGP',
'el_id' => 'ENSG00000214042-ENSG00000186803'
)
),
(int) 7 => array(
'region_elements' => array(
'region_element_id' => 'CIL_00056K_0008',
'tax_id' => '9606',
'chromosome' => '9',
'seq_start' => '21239002',
'seq_end' => '21305312',
'region_length' => '66310',
'region_type' => 'CGP',
'el_id' => 'ENSG00000228083-ENSG00000147873'
)
),
(int) 8 => array(
'region_elements' => array(
'region_element_id' => 'CIL_00056K_0009',
'tax_id' => '9606',
'chromosome' => '9',
'seq_start' => '21367424',
'seq_end' => '21385388',
'region_length' => '17964',
'region_type' => 'CGP',
'el_id' => 'ENSG00000233816-ENSG00000188379'
)
),
(int) 9 => array(
'region_elements' => array(
'region_element_id' => 'CIL_00056K_000A',
'tax_id' => '9606',
'chromosome' => '9',
'seq_start' => '21206528',
'seq_end' => '21239935',
'region_length' => '33407',
'region_type' => 'CGP',
'el_id' => 'ENSG00000234829-ENSG00000147885'
)
),
(int) 10 => array(
'region_elements' => array(
'region_element_id' => 'CIL_00056K_000B',
'tax_id' => '9606',
'chromosome' => '9',
'seq_start' => '21186694',
'seq_end' => '21202205',
'region_length' => '15511',
'region_type' => 'CGP',
'el_id' => 'ENSG00000236637-ENSG00000214042'
)
),
(int) 11 => array(
'region_elements' => array(
'region_element_id' => 'CIL_00056K_000C',
'tax_id' => '10090',
'chromosome' => '4',
'seq_start' => '88643641',
'seq_end' => '88676924',
'region_length' => '33283',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000063376-ENSMUSG00000078355'
)
),
(int) 12 => array(
'region_elements' => array(
'region_element_id' => 'CIL_00056K_000D',
'tax_id' => '10090',
'chromosome' => '4',
'seq_start' => '88841861',
'seq_end' => '88850656',
'region_length' => '8795',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000070904-ENSMUSG00000095498'
)
),
(int) 13 => array(
'region_elements' => array(
'region_element_id' => 'CIL_00056K_000E',
'tax_id' => '10090',
'chromosome' => '4',
'seq_start' => '88682881',
'seq_end' => '88691359',
'region_length' => '8478',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000078354-ENSMUSG00000100079'
)
),
(int) 14 => array(
'region_elements' => array(
'region_element_id' => 'CIL_00056K_000F',
'tax_id' => '10090',
'chromosome' => '4',
'seq_start' => '88675915',
'seq_end' => '88683912',
'region_length' => '7997',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000078355-ENSMUSG00000078354'
)
),
(int) 15 => array(
'region_elements' => array(
'region_element_id' => 'CIL_00056K_000G',
'tax_id' => '10090',
'chromosome' => '4',
'seq_start' => '88591813',
'seq_end' => '88603376',
'region_length' => '11563',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000095270-ENSMUSG00000073811'
)
),
(int) 16 => array(
'region_elements' => array(
'region_element_id' => 'CIL_00056K_000H',
'tax_id' => '10090',
'chromosome' => '4',
'seq_start' => '88571229',
'seq_end' => '88592385',
'region_length' => '21156',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000095896-ENSMUSG00000095270'
)
),
(int) 17 => array(
'region_elements' => array(
'region_element_id' => 'CIL_00056K_000I',
'tax_id' => '10090',
'chromosome' => '4',
'seq_start' => '88557673',
'seq_end' => '88571798',
'region_length' => '14125',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000096011-ENSMUSG00000095896'
)
),
(int) 18 => array(
'region_elements' => array(
'region_element_id' => 'CIL_00056K_000J',
'tax_id' => '10090',
'chromosome' => '4',
'seq_start' => '88835525',
'seq_end' => '88842421',
'region_length' => '6896',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000096682-ENSMUSG00000070904'
)
),
(int) 19 => array(
'region_elements' => array(
'region_element_id' => 'CIL_00056K_000K',
'tax_id' => '10090',
'chromosome' => '4',
'seq_start' => '88819959',
'seq_end' => '88827985',
'region_length' => '8026',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000100549-ENSMUSG00000101252'
)
),
(int) 20 => array(
'region_elements' => array(
'region_element_id' => 'CIL_00056K_000L',
'tax_id' => '10090',
'chromosome' => '4',
'seq_start' => '88816228',
'seq_end' => '88820531',
'region_length' => '4303',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000100713-ENSMUSG00000100549'
)
),
(int) 21 => array(
'region_elements' => array(
'region_element_id' => 'CIL_00056K_000M',
'tax_id' => '10090',
'chromosome' => '4',
'seq_start' => '88827416',
'seq_end' => '88836094',
'region_length' => '8678',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000101252-ENSMUSG00000096682'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 3 => 'Adrenal',
(int) 7 => 'Bladder',
(int) 11 => 'Brain',
(int) 36 => 'Breast',
(int) 38 => 'Colon',
(int) 43 => 'Heart',
(int) 48 => 'Kidney',
(int) 52 => 'Liver',
(int) 56 => 'Lung',
(int) 58 => 'Ovary',
(int) 64 => 'Placenta',
(int) 71 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 79
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000259555' => array(
'start' => '21350253',
'end' => '21350956',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA6-201'
),
'ENST00000380210' => array(
'start' => '21349835',
'end' => '21351378',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA6-001'
),
'ENST00000449498' => array(
'start' => '21367424',
'end' => '21368057',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA13-201'
),
'ENST00000610660' => array(
'start' => '21367424',
'end' => '21368962',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA13-001'
),
'ENST00000380205' => array(
'start' => '21409147',
'end' => '21410185',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA8-001'
),
'ENST00000276927' => array(
'start' => '21440454',
'end' => '21441316',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA1-001'
),
'ENST00000613815' => array(
'start' => '21409169',
'end' => '21441139',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA1-201'
),
'ENST00000431203' => array(
'start' => '21420234',
'end' => '21420813',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'IFNWP2-001'
),
'ENST00000380225' => array(
'start' => '21165637',
'end' => '21166660',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA21-001'
),
'ENST00000442022' => array(
'start' => '21178589',
'end' => '21179188',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'IFNWP15-001'
),
'ENST00000421715' => array(
'start' => '21186694',
'end' => '21187671',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA4-001'
),
'ENST00000380216' => array(
'start' => '21216373',
'end' => '21217311',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA16-001'
),
'ENST00000616765' => array(
'start' => '21216736',
'end' => '21239935',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA16-201'
),
'ENST00000380222' => array(
'start' => '21239002',
'end' => '21239991',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA14-001'
),
'ENST00000445100' => array(
'start' => '21231266',
'end' => '21231853',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'IFNWP5-001'
),
'ENST00000413767' => array(
'start' => '21227243',
'end' => '21228222',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA17-001'
),
'ENST00000619448' => array(
'start' => '21206528',
'end' => '21228173',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA17-201'
),
'ENST00000357374' => array(
'start' => '21206181',
'end' => '21207143',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA10-001'
),
'ENST00000437472' => array(
'start' => '21209189',
'end' => '21209779',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'IFNWP18-001'
),
'ENST00000380206' => array(
'start' => '21384254',
'end' => '21385388',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA2-001'
),
'ENST00000446352' => array(
'start' => '21398614',
'end' => '21399139',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'IFNA11P-001'
),
'ENST00000413147' => array(
'start' => '21403081',
'end' => '21403651',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'IFNA12P-001'
),
'ENST00000569618' => array(
'start' => '21394888',
'end' => '21396346',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-354P17.15-001'
),
'ENST00000239347' => array(
'start' => '21201469',
'end' => '21202205',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA7-001'
),
'ENST00000610521' => array(
'start' => '21304326',
'end' => '21305312',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IFNA5-001'
),
'ENST00000458710' => array(
'start' => '21278050',
'end' => '21278619',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'IFNA22P-001'
),
'ENST00000448683' => array(
'start' => '21190654',
'end' => '21191244',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'IFNWP9-001'
),
'ENSMUST00000072734' => array(
'start' => '88643641',
'end' => '88644459',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ifna13-201'
),
'ENSMUST00000105149' => array(
'start' => '88643641',
'end' => '88644459',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ifna13-001'
),
'ENSMUST00000105148' => array(
'start' => '88675915',
'end' => '88676924',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ifna16-001'
),
'ENSMUST00000120871' => array(
'start' => '88648738',
'end' => '88649304',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'Gm13281-001'
),
'ENSMUST00000094973' => array(
'start' => '88841861',
'end' => '88842421',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ifna4-001'
),
'ENSMUST00000094972' => array(
'start' => '88850087',
'end' => '88850656',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ifna1-001'
),
'ENSMUST00000105147' => array(
'start' => '88682881',
'end' => '88683912',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ifna2-001'
),
'ENSMUST00000071378' => array(
'start' => '88690302',
'end' => '88691359',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ifnab-001'
),
'ENSMUST00000102806' => array(
'start' => '88602580',
'end' => '88603376',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ifna12-001'
),
'ENSMUST00000121413' => array(
'start' => '88599175',
'end' => '88599810',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Mrpl48-ps-001'
),
'ENSMUST00000102807' => array(
'start' => '88591813',
'end' => '88592385',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ifna9-001'
),
'ENSMUST00000119856' => array(
'start' => '88578887',
'end' => '88580574',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'Ifna-ps1-001'
),
'ENSMUST00000102808' => array(
'start' => '88571229',
'end' => '88571798',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ifna14-001'
),
'ENSMUST00000102809' => array(
'start' => '88557673',
'end' => '88558245',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ifna15-001'
),
'ENSMUST00000102804' => array(
'start' => '88835525',
'end' => '88836094',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ifna5-001'
),
'ENSMUST00000170428' => array(
'start' => '88819959',
'end' => '88820531',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ifna11-001'
),
'ENSMUST00000105146' => array(
'start' => '88827416',
'end' => '88827985',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ifna6-001'
),
'ENSMUST00000105143' => array(
'start' => '88816228',
'end' => '88816800',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ifna7-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_00056K_0001' => array(
'genes_in_region' => array(
'ENSG00000120235' => array(
[maximum depth reached]
),
'ENSG00000233816' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Testis',
(int) 2 => 'Ovary',
(int) 3 => 'Brain',
(int) 4 => 'Bladder',
(int) 5 => 'Brain',
(int) 6 => 'Testis'
)
),
'CIL_00056K_0002' => array(
'genes_in_region' => array(
'ENSG00000120242' => array(
[maximum depth reached]
),
'ENSG00000197919' => array(
[maximum depth reached]
),
'ENSG00000237691' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Brain',
(int) 2 => 'Kidney',
(int) 3 => 'Brain',
(int) 4 => 'Lung',
(int) 5 => 'Testis'
)
),
'CIL_00056K_0003' => array(
'genes_in_region' => array(
'ENSG00000137080' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Ovary',
(int) 3 => 'Testis'
)
),
'CIL_00056K_0004' => array(
'genes_in_region' => array(
'ENSG00000147885' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain'
)
),
'CIL_00056K_0005' => array(
'genes_in_region' => array(
'ENSG00000147885' => array(
[maximum depth reached]
),
'ENSG00000223684' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Testis'
)
),
'CIL_00056K_0006' => array(
'genes_in_region' => array(
'ENSG00000120242' => array(
[maximum depth reached]
),
'ENSG00000188379' => array(
[maximum depth reached]
),
'ENSG00000197919' => array(
[maximum depth reached]
),
'ENSG00000231195' => array(
[maximum depth reached]
),
'ENSG00000235108' => array(
[maximum depth reached]
),
'ENSG00000261696' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Brain',
(int) 2 => 'Colon',
(int) 3 => 'Testis',
(int) 4 => 'Brain',
(int) 5 => 'Kidney',
(int) 6 => 'Adipose',
(int) 7 => 'Brain',
(int) 8 => 'Heart',
(int) 9 => 'Ovary',
(int) 10 => 'Placenta',
(int) 11 => 'Testis',
(int) 12 => 'Brain',
(int) 13 => 'Testis',
(int) 14 => 'Adipose',
(int) 15 => 'Brain',
(int) 16 => 'Colon',
(int) 17 => 'Placenta',
(int) 18 => 'Testis'
)
),
'CIL_00056K_0008' => array(
'genes_in_region' => array(
'ENSG00000147873' => array(
[maximum depth reached]
),
'ENSG00000147885' => array(
[maximum depth reached]
),
'ENSG00000224416' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Brain',
(int) 2 => 'Colon',
(int) 3 => 'Ovary',
(int) 4 => 'Testis',
(int) 5 => 'Brain',
(int) 6 => 'Adrenal',
(int) 7 => 'Breast',
(int) 8 => 'Placenta'
)
),
'CIL_00056K_0009' => array(
'genes_in_region' => array(
'ENSG00000188379' => array(
[maximum depth reached]
),
'ENSG00000233816' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Colon',
(int) 2 => 'Testis',
(int) 3 => 'Brain',
(int) 4 => 'Bladder',
(int) 5 => 'Brain',
(int) 6 => 'Testis'
)
),
'CIL_00056K_000A' => array(
'genes_in_region' => array(
'ENSG00000147885' => array(
[maximum depth reached]
),
'ENSG00000223684' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Testis'
)
),
'CIL_00056K_000B' => array(
'genes_in_region' => array(
'ENSG00000226597' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain'
)
),
'CIL_00056K_000C' => array(
'genes_in_region' => array(
'ENSMUSG00000063376' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Kidney',
(int) 1 => 'Placenta',
(int) 2 => 'Testis'
)
),
'CIL_00056K_000D' => array(
'genes_in_region' => array(
'ENSMUSG00000070904' => array(
[maximum depth reached]
),
'ENSMUSG00000095498' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Liver',
(int) 1 => 'Placenta'
)
),
'CIL_00056K_000E' => array(
'genes_in_region' => array(
'ENSMUSG00000078354' => array(
[maximum depth reached]
),
'ENSMUSG00000100079' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis',
(int) 1 => 'Brain',
(int) 2 => 'Liver',
(int) 3 => 'Placenta',
(int) 4 => 'Testis'
)
),
'CIL_00056K_000F' => array(
'genes_in_region' => array(
'ENSMUSG00000078354' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis'
)
),
'CIL_00056K_000G' => array(
'genes_in_region' => array(
'ENSMUSG00000073811' => array(
[maximum depth reached]
),
'ENSMUSG00000078480' => array(
[maximum depth reached]
),
'ENSMUSG00000095270' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Ovary',
(int) 1 => 'Adipose',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Ovary',
(int) 10 => 'Placenta',
(int) 11 => 'Testis',
(int) 12 => 'Adrenal'
)
),
'CIL_00056K_000H' => array(
'genes_in_region' => array(
'ENSMUSG00000095270' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal'
)
),
'CIL_00056K_000J' => array(
'genes_in_region' => array(
'ENSMUSG00000070904' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Liver'
)
),
'CIL_00056K_000K' => array(
'genes_in_region' => array(
'ENSMUSG00000101252' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Bladder',
(int) 1 => 'Testis'
)
),
'CIL_00056K_000L' => array(
'genes_in_region' => array(
'ENSMUSG00000100713' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain'
)
),
'CIL_00056K_000M' => array(
'genes_in_region' => array(
'ENSMUSG00000101252' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Bladder',
(int) 1 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_00056K_0007',
'tax_id' => '9606',
'chromosome' => '9',
'seq_start' => '21201469',
'seq_end' => '21207143',
'region_length' => '5674',
'region_type' => 'CGP',
'el_id' => 'ENSG00000214042-ENSG00000186803'
)
)
$gene_el = array(
'ENST00000569618' => array(
'Adipose' => array(
'average_FPKM' => '0.021',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.088',
'stddev_FPKM' => '0.02'
),
'Colon' => array(
'average_FPKM' => '0.028',
'stddev_FPKM' => '0.00'
),
'Placenta' => array(
'average_FPKM' => '0.026',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.209',
'stddev_FPKM' => '0.18'
)
)
)
$gene_key = 'ENSG00000261696'
$is_first = false
$tran_el = array(
'Adipose' => array(
'average_FPKM' => '0.021',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.088',
'stddev_FPKM' => '0.02'
),
'Colon' => array(
'average_FPKM' => '0.028',
'stddev_FPKM' => '0.00'
),
'Placenta' => array(
'average_FPKM' => '0.026',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.209',
'stddev_FPKM' => '0.18'
)
)
$tran_key = 'ENST00000569618'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108