C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protocadherin gamma subfamily C, 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000240184 PCDHGC3 9606 + 5:141475947-141512979 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000308177 PCDHGC3-001 141476003-141512979 protein_coding
  ENST00000611950 PCDHGC3-003 141475947-141478795 protein_coding
  ENST00000616230 PCDHGC3-004 141475996-141477756 processed_transcript
  ENST00000617222 PCDHGC3-006 141476001-141511230 protein_coding
  ENST00000617641 PCDHGC3-002 141475980-141512977 protein_coding
  ENST00000621008 PCDHGC3-005 141475999-141477227 protein_coding
  ENST00000622656 PCDHGC3-007 141476004-141507291 processed_transcript
  ENST00000622836 PCDHGC3-008 141508070-141511527 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000308177ENST00000611950ENST00000617641
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000308177 34.260±0.00 20.124±0.00 45.238±34.32 19.668±0.00 24.137±0.00 30.451±0.00 8.529±4.96 N/A 30.350±17.55 5.217±0.00 25.028±18.75 34.189±3.97 15.148±5.99
ENST00000611950 N/A N/A 15.178±0.00 N/A N/A N/A N/A 46.581±0.00 22.810±0.00 6.150±0.00 N/A N/A N/A
ENST00000617641 49.011±0.00 47.576±0.00 140.087±0.00 45.603±0.00 50.585±0.00 N/A 33.193±0.00 19.520±0.00 82.154±0.00 11.225±0.00 78.132±22.96 49.672±0.97 55.409±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000630 CIL_000630_000Q CGP 5:141330571-141512981
CIL_000630 CIL_000630_000P CGP 5:141338760-141512979
CIL_000630 CIL_000630_0012 CGP 5:141343829-141512979
CIL_000630 CIL_000630_0011 CGP 5:141350102-141512979
CIL_000630 CIL_000630_0015 CGP 5:141355025-141512979
CIL_000630 CIL_000630_000Y CGP 5:141360042-141512979
CIL_000630 CIL_000630_000S CGP 5:141364232-141512979
CIL_000630 CIL_000630_0014 CGP 5:141370264-141512979
CIL_000630 CIL_000630_000U CGP 5:141373914-141512979
CIL_000630 CIL_000630_000T CGP 5:141382739-141512979
CIL_000630 CIL_000630_000Z CGP 5:141387698-141512979
CIL_000630 CIL_000630_000V CGP 5:141390157-141512979
CIL_000630 CIL_000630_0016 CGP 5:141397987-141512979
CIL_000630 CIL_000630_0013 CGP 5:141402932-141512979
CIL_000630 CIL_000630_000R CGP 5:141408021-141512979
CIL_000630 CIL_000630_000W CGP 5:141412987-141512979
CIL_000630 CIL_000630_0010 CGP 5:141417645-141512979
CIL_000630 CIL_000630_000X CGP 5:141421047-141512979

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 NAS:IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016339 NAS calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0070062 IDA extracellular vesicular exosome

Homologs

No Homologs available.

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