C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin gamma subfamily C, 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000308177 PCDHGC3-001 ENSG00000240184 9606 + 5:141476003-141512979 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000308177
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000308177 34.260±0.00 20.124±0.00 45.238±34.32 19.668±0.00 24.137±0.00 30.451±0.00 8.529±4.96 30.350±17.55 5.217±0.00 25.028±18.75 34.189±3.97 15.148±5.99

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000630 CIL_000630_000Q CGP 5:141330571-141512981
CIL_000630 CIL_000630_000P CGP 5:141338760-141512979
CIL_000630 CIL_000630_0012 CGP 5:141343829-141512979
CIL_000630 CIL_000630_0011 CGP 5:141350102-141512979
CIL_000630 CIL_000630_0015 CGP 5:141355025-141512979
CIL_000630 CIL_000630_000Y CGP 5:141360042-141512979
CIL_000630 CIL_000630_000S CGP 5:141364232-141512979
CIL_000630 CIL_000630_0014 CGP 5:141370264-141512979
CIL_000630 CIL_000630_000U CGP 5:141373914-141512979
CIL_000630 CIL_000630_000T CGP 5:141382739-141512979
CIL_000630 CIL_000630_000Z CGP 5:141387698-141512979
CIL_000630 CIL_000630_000V CGP 5:141390157-141512979
CIL_000630 CIL_000630_0016 CGP 5:141397987-141512979
CIL_000630 CIL_000630_0013 CGP 5:141402932-141512979
CIL_000630 CIL_000630_000R CGP 5:141408021-141512979
CIL_000630 CIL_000630_000W CGP 5:141412987-141512979
CIL_000630 CIL_000630_0010 CGP 5:141417645-141512979
CIL_000630 CIL_000630_000X CGP 5:141421047-141512979

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 NAS:IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016339 NAS calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000076807 Pcdhga12-208 protein_coding Mus_musculus 0 4087
ENSMUST00000055935 Pcdhga12-203 protein_coding Mus_musculus 0 1129
ENSMUST00000073447 Pcdhga12-207 protein_coding Mus_musculus 0 1129
ENSMUST00000044851 Pcdhga12-202 protein_coding Mus_musculus 0 1129
ENSMUST00000061279 Pcdhga12-204 protein_coding Mus_musculus 0 1129
ENSMUST00000066140 Pcdhga12-205 protein_coding Mus_musculus 0 1127
ENSMUST00000003599 Pcdhga12-201 protein_coding Mus_musculus 0 1125
ENSMUST00000066149 Pcdhga12-206 protein_coding Mus_musculus 0 1125
ENSMUST00000091935 Pcdhga12-209 protein_coding Mus_musculus 0 1123
ENSMUST00000115661 Pcdha10-208 protein_coding Mus_musculus 0 573

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