C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin gamma subfamily C, 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000617641 PCDHGC3-002 ENSG00000240184 9606 + 5:141475980-141512977 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000617641
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000617641 49.011±0.00 47.576±0.00 140.087±0.00 45.603±0.00 50.585±0.00 33.193±0.00 19.520±0.00 82.154±0.00 11.225±0.00 78.132±22.96 49.672±0.97 55.409±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000630 CIL_000630_000Q CGP 5:141330571-141512981
CIL_000630 CIL_000630_000P CGP 5:141338760-141512979
CIL_000630 CIL_000630_0012 CGP 5:141343829-141512979
CIL_000630 CIL_000630_0011 CGP 5:141350102-141512979
CIL_000630 CIL_000630_0015 CGP 5:141355025-141512979
CIL_000630 CIL_000630_000Y CGP 5:141360042-141512979
CIL_000630 CIL_000630_000S CGP 5:141364232-141512979
CIL_000630 CIL_000630_0014 CGP 5:141370264-141512979
CIL_000630 CIL_000630_000U CGP 5:141373914-141512979
CIL_000630 CIL_000630_000T CGP 5:141382739-141512979
CIL_000630 CIL_000630_000Z CGP 5:141387698-141512979
CIL_000630 CIL_000630_000V CGP 5:141390157-141512979
CIL_000630 CIL_000630_0016 CGP 5:141397987-141512979
CIL_000630 CIL_000630_0013 CGP 5:141402932-141512979
CIL_000630 CIL_000630_000R CGP 5:141408021-141512979
CIL_000630 CIL_000630_000W CGP 5:141412987-141512979
CIL_000630 CIL_000630_0010 CGP 5:141417645-141512979
CIL_000630 CIL_000630_000X CGP 5:141421047-141512979

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000055935 Pcdhga12-203 protein_coding Mus_musculus 0 1129
ENSMUST00000076807 Pcdhga12-208 protein_coding Mus_musculus 0 1129
ENSMUST00000073447 Pcdhga12-207 protein_coding Mus_musculus 0 1125
ENSMUST00000003599 Pcdhga12-201 protein_coding Mus_musculus 0 1125
ENSMUST00000066140 Pcdhga12-205 protein_coding Mus_musculus 0 1125
ENSMUST00000044851 Pcdhga12-202 protein_coding Mus_musculus 0 1125
ENSMUST00000061279 Pcdhga12-204 protein_coding Mus_musculus 0 1125
ENSMUST00000066149 Pcdhga12-206 protein_coding Mus_musculus 0 1125
ENSMUST00000091935 Pcdhga12-209 protein_coding Mus_musculus 0 1123
ENSMUST00000115661 Pcdha10-208 protein_coding Mus_musculus 0 569

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