C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protocadherin gamma subfamily C, 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000240764 PCDHGC5 9606 + 5:141489121-141512979 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000252087 PCDHGC5-001 141489121-141512979 protein_coding
  ENST00000610789 PCDHGC5-002 141489167-141491929 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainENST00000252087
Transcript ID Brain
ENST00000252087 13.110±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000630 CIL_000630_000Q CGP 5:141330571-141512981
CIL_000630 CIL_000630_000P CGP 5:141338760-141512979
CIL_000630 CIL_000630_0012 CGP 5:141343829-141512979
CIL_000630 CIL_000630_0011 CGP 5:141350102-141512979
CIL_000630 CIL_000630_0015 CGP 5:141355025-141512979
CIL_000630 CIL_000630_000Y CGP 5:141360042-141512979
CIL_000630 CIL_000630_000S CGP 5:141364232-141512979
CIL_000630 CIL_000630_0014 CGP 5:141370264-141512979
CIL_000630 CIL_000630_000U CGP 5:141373914-141512979
CIL_000630 CIL_000630_000T CGP 5:141382739-141512979
CIL_000630 CIL_000630_000Z CGP 5:141387698-141512979
CIL_000630 CIL_000630_000V CGP 5:141390157-141512979
CIL_000630 CIL_000630_0016 CGP 5:141397987-141512979
CIL_000630 CIL_000630_0013 CGP 5:141402932-141512979
CIL_000630 CIL_000630_000R CGP 5:141408021-141512979
CIL_000630 CIL_000630_000W CGP 5:141412987-141512979
CIL_000630 CIL_000630_0010 CGP 5:141417645-141512979
CIL_000630 CIL_000630_000X CGP 5:141421047-141512979

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037691 pcdh2ab2 protocadherin 2 alpha b2 protein_coding Danio_rerio
ENSDARG00000071904 pcdh2ab1 protocadherin 2 alpha b 1 protein_coding Danio_rerio
ENSDARG00000071905 pcdh2ab3 protocadherin 2 alpha b 3 protein_coding Danio_rerio
ENSDARG00000073973 pcdh2aa3 protocadherin 2 alpha a 3 protein_coding Danio_rerio
ENSDARG00000074595 pcdh2aa3 protocadherin 2 alpha a 3 protein_coding Danio_rerio
ENSDARG00000077023 pcdhb protocadherin b protein_coding Danio_rerio
ENSDARG00000086231 CT573264.4 protocadherin gamma subfamily C, 5 protein_coding Danio_rerio
ENSDARG00000086307 CR847851.1 protocadherin gamma subfamily C, 5 protein_coding Danio_rerio
ENSDARG00000086485 AL929558.1 protocadherin gamma subfamily C, 5 protein_coding Danio_rerio
ENSDARG00000087121 AL929558.2 protocadherin gamma subfamily C, 5 protein_coding Danio_rerio
ENSDARG00000087586 pcdh2ab2 protocadherin 2 alpha b2 protein_coding Danio_rerio
ENSDARG00000087698 AL929558.3 protocadherin gamma subfamily C, 5 protein_coding Danio_rerio
ENSDARG00000087724 CT573264.5 protocadherin gamma subfamily C, 5 protein_coding Danio_rerio
ENSDARG00000087958 pcdh2aa15 protocadherin 2 alpha a 15 protein_coding Danio_rerio
ENSDARG00000087974 pcdh2ab12 protocadherin 2 alpha b 12 protein_coding Danio_rerio
ENSDARG00000088053 CR847851.3 protocadherin gamma subfamily C, 5 protein_coding Danio_rerio
ENSDARG00000088136 CR847851.4 protocadherin gamma subfamily C, 5 protein_coding Danio_rerio
ENSDARG00000088380 pcdh2ab12 protocadherin 2 alpha b 12 protein_coding Danio_rerio
ENSDARG00000088418 AL929558.4 protocadherin gamma subfamily C, 5 protein_coding Danio_rerio
ENSDARG00000088522 CR847851.5 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000088587 CR847851.5 protocadherin gamma subfamily C, 5 protein_coding Danio_rerio
ENSDARG00000088669 CR847851.6 protocadherin gamma subfamily C, 5 protein_coding Danio_rerio
ENSDARG00000088724 pcdh2ab10 protocadherin 2 alpha b 10 protein_coding Danio_rerio
ENSDARG00000088752 pcdh2ab7 protocadherin 2 alpha b 7 protein_coding Danio_rerio
ENSDARG00000089289 pcdh1a6 protocadherin 1 alpha 6 protein_coding Danio_rerio
ENSDARG00000089297 CR847851.8 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000089562 BX957322.2 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000089593 pcdh2ab11 protocadherin 2 alpha b 11 protein_coding Danio_rerio
ENSDARG00000089874 pcdh2ab8 protocadherin 2 alpha b 8 protein_coding Danio_rerio
ENSDARG00000090748 pcdh2ab9 protocadherin 2 alpha b 9 protein_coding Danio_rerio
ENSDARG00000091043 pcdh2ab6 protocadherin 2 alpha b 6 protein_coding Danio_rerio

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