C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Putative short transient receptor potential channel 2-like protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000254469 RP11-849H4.2 9606 - 11:71865509-71928654 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000528184 RP11-849H4.2-004 71918924-71928594 protein_coding
  ENST00000528511 RP11-849H4.2-003 71884313-71928595 protein_coding
  ENST00000528560 RP11-849H4.2-010 71903660-71917238 protein_coding
  ENST00000529513 RP11-849H4.2-006 71917191-71928437 protein_coding
  ENST00000529844 RP11-849H4.2-001 71916595-71928654 protein_coding
  ENST00000531488 RP11-849H4.2-005 71927578-71928447 processed_transcript
  ENST00000532852 RP11-849H4.2-009 71865509-71918957 protein_coding
  ENST00000533047 RP11-849H4.2-002 71917698-71928624 protein_coding
  ENST00000534704 RP11-849H4.2-008 71917717-71928403 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000528184ENST00000528511ENST00000528560ENST00000529513ENST00000529844ENST00000531488ENST00000532852ENST00000533047ENST00000534704
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000528184 N/A N/A N/A N/A N/A 0.252±0.00 N/A 0.188±0.00 N/A N/A N/A N/A N/A
ENST00000528511 0.148±0.00 N/A N/A N/A N/A N/A 0.160±0.00 N/A N/A N/A N/A 0.221±0.15 0.422±0.00
ENST00000528560 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.384±0.12 N/A N/A N/A
ENST00000529513 N/A 1.002±0.00 0.404±0.00 0.531±0.00 0.171±0.00 0.408±0.00 N/A 0.136±0.00 0.172±0.00 N/A N/A N/A 0.489±0.00
ENST00000529844 N/A 0.503±0.00 0.163±0.00 N/A N/A N/A 0.189±0.00 0.734±0.00 0.085±0.00 N/A N/A N/A 1.116±0.00
ENST00000531488 0.302±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.197±0.00 N/A
ENST00000532852 N/A 0.688±0.00 0.355±0.00 0.202±0.00 N/A 0.338±0.00 0.398±0.00 0.092±0.00 N/A N/A N/A 0.203±0.12 0.639±0.00
ENST00000533047 N/A N/A N/A N/A N/A 0.398±0.00 0.391±0.00 N/A N/A N/A N/A 0.509±0.00 N/A
ENST00000534704 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.538±0.00 0.769±0.00 N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000012 IEA single strand break repair
GO:0000139 IEA Golgi membrane
GO:0002121 IEA inter-male aggressive behavior
GO:0002124 IEA territorial aggressive behavior
GO:0003684 IEA damaged DNA binding
GO:0005515 IEA protein binding
GO:0005516 IEA calmodulin binding
GO:0005634 IBA:IEA nucleus
GO:0005635 IEA nuclear envelope
GO:0005789 IEA endoplasmic reticulum membrane
GO:0005886 IEA plasma membrane
GO:0006284 IBA base-excision repair
GO:0006816 IEA calcium ion transport
GO:0007204 IEA positive regulation of cytosolic calcium ion concentration
GO:0007340 IEA acrosome reaction
GO:0008050 IEA female courtship behavior
GO:0010468 IEA regulation of gene expression
GO:0012505 IEA endomembrane system
GO:0015279 IEA store-operated calcium channel activity
GO:0019236 IEA response to pheromone
GO:0019992 IEA diacylglycerol binding
GO:0032590 IEA dendrite membrane
GO:0048047 IEA mating behavior, sex discrimination
GO:0070588 IEA calcium ion transmembrane transport
GO:1902436 IEA negative regulation of male mating behavior

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000032263 zgc:110224 zgc:110224 protein_coding Danio_rerio
ENSMUSG00000099481 Xndc1 Xrcc1 N-terminal domain containing 1 protein_coding Mus_musculus

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