C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Xrcc1 N-terminal domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000099481 Xndc1 10090 + 7:102065511-102083765 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000094130 Xndc1-002 102065758-102083081 protein_coding
  ENSMUST00000106950 Xndc1-001 102065511-102083762 protein_coding
  ENSMUST00000125197 Xndc1-005 102075917-102079266 retained_intron
  ENSMUST00000140395 Xndc1-008 102081058-102082591 processed_transcript
  ENSMUST00000141646 Xndc1-006 102065522-102070003 processed_transcript
  ENSMUST00000142629 Xndc1-003 102078784-102083765 nonsense_mediated_decay
  ENSMUST00000143839 Xndc1-009 102081061-102082521 retained_intron
  ENSMUST00000146450 Xndc1-007 102065593-102077880 protein_coding
  ENSMUST00000153176 Xndc1-004 102065520-102080295 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000094130ENSMUST00000106950ENSMUST00000125197ENSMUST00000140395ENSMUST00000142629ENSMUST00000143839ENSMUST00000153176
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000094130 3.889±0.54 2.134±0.35 2.365±0.00 3.223±0.00 2.527±0.23 2.848±0.49 N/A 1.729±0.77 2.120±1.42 1.901±0.00 0.690±0.07 4.032±1.07 1.991±0.80 8.989±4.21
ENSMUST00000106950 3.147±0.81 1.796±0.47 1.696±0.00 3.629±0.92 2.430±0.84 1.947±0.45 1.273±0.10 2.593±0.76 1.287±0.81 2.311±0.30 N/A 2.198±0.50 1.063±0.07 3.099±0.00
ENSMUST00000125197 N/A 7.119±0.99 N/A N/A 7.557±0.89 N/A 3.375±0.00 N/A 2.247±0.00 N/A N/A 12.004±2.08 N/A N/A
ENSMUST00000140395 N/A 7.534±1.92 N/A N/A N/A 5.769±0.00 2.629±0.00 3.523±0.00 N/A N/A N/A 9.698±3.51 N/A N/A
ENSMUST00000142629 N/A N/A 4.049±0.36 3.622±0.00 N/A N/A N/A N/A 3.510±0.85 N/A 0.861±0.18 4.921±0.48 2.326±0.79 2.690±0.00
ENSMUST00000143839 N/A 8.102±1.99 N/A N/A 6.350±1.07 N/A N/A N/A 1.180±0.04 4.186±0.00 N/A 7.220±0.00 N/A N/A
ENSMUST00000153176 2.090±0.00 N/A 2.845±0.00 4.258±1.55 2.845±0.86 N/A 1.042±0.23 N/A 2.894±0.88 2.398±0.37 0.866±0.25 3.033±0.95 2.204±0.53 4.053±2.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002ZS CIL_0002ZS_0002 CGP 7:102065511-102096864

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000012 IEA single strand break repair
GO:0000139 IDA Golgi membrane
GO:0002121 IMP inter-male aggressive behavior
GO:0002124 IMP territorial aggressive behavior
GO:0003684 IEA damaged DNA binding
GO:0005515 IPI protein binding
GO:0005516 IDA calmodulin binding
GO:0005635 IDA nuclear envelope
GO:0005789 IDA endoplasmic reticulum membrane
GO:0005886 IDA plasma membrane
GO:0006816 IMP calcium ion transport
GO:0007204 IPI positive regulation of cytosolic calcium ion concentration
GO:0007340 IMP acrosome reaction
GO:0008050 IMP female courtship behavior
GO:0010468 IMP regulation of gene expression
GO:0012505 IDA endomembrane system
GO:0015279 IDA store-operated calcium channel activity
GO:0019236 IMP response to pheromone
GO:0019992 IMP diacylglycerol binding
GO:0032590 IMP dendrite membrane
GO:0048047 IMP mating behavior, sex discrimination
GO:0070588 IDA calcium ion transmembrane transport
GO:1902436 IGI negative regulation of male mating behavior

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000032263 zgc:110224 zgc:110224 protein_coding Danio_rerio
ENSG00000254469 RP11-849H4.2 Putative short transient receptor potential channel 2-like protein protein_coding Homo_sapiens

Loading