C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: scratch family zinc finger 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000261678 SCRT1 9606 - 8:144330565-144336281 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000569446 SCRT1-001 144330565-144336281 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000569446
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000569446 0.010±0.00 0.022±0.00 10.028±8.88 0.038±0.00 0.034±0.00 0.034±0.00 0.075±0.00 0.011±0.00 0.020±0.00 0.041±0.00 0.099±0.00 0.557±0.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SS CIL_0007SS_0001 VISTA 8:143880613-144482307
CIL_00026R CIL_00026R_0001 CGP 8:144314584-144336281

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IEA DNA binding
GO:0003700 NAS sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:2001222 IEA regulation of neuron migration

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000023261 scrt1a scratch homolog 1, zinc finger protein a (Drosophila) protein_coding Danio_rerio
ENSDARG00000040214 scrt1b scratch homolog 1, zinc finger protein b (Drosophila) protein_coding Danio_rerio
ENSMUSG00000048385 Scrt1 scratch homolog 1, zinc finger protein (Drosophila) protein_coding Mus_musculus

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