C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: scratch homolog 1, zinc finger protein (Drosophila)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000048385 Scrt1 10090 - 15:76516203-76522129 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000096365 Scrt1-201 76516203-76522129 protein_coding
  ENSMUST00000164703 Scrt1-202 76516213-76521902 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000096365ENSMUST00000164703
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000096365 N/A 0.242±0.07 0.017±0.00 25.012±5.78 N/A 0.048±0.01 0.027±0.00 0.007±0.00 0.017±0.00 0.017±0.00 0.020±0.00 0.024±0.01 8.306±3.27
ENSMUST00000164703 0.024±0.02 0.245±0.07 0.004±0.00 3.358±0.00 0.028±0.01 0.032±0.01 0.013±0.00 0.007±0.00 0.053±0.06 0.011±0.01 0.084±0.06 0.018±0.01 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SS CIL_0007SS_0002 VISTA 15:76102685-76704351
CIL_00026R CIL_00026R_0002 CGP 15:76502015-76522129

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:2001222 IMP regulation of neuron migration

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000023261 scrt1a scratch homolog 1, zinc finger protein a (Drosophila) protein_coding Danio_rerio
ENSDARG00000040214 scrt1b scratch homolog 1, zinc finger protein b (Drosophila) protein_coding Danio_rerio
ENSG00000261678 SCRT1 scratch family zinc finger 1 protein_coding Homo_sapiens

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