C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: spondin 1, extracellular matrix protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000262655 SPON1 9606 + 11:13962689-14267884 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000576479 SPON1-001 13962689-14267884 protein_coding
  ENST00000591785 SPON1-002 14262447-14265999 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000576479ENST00000591785
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000576479 17.198±0.00 2.320±0.00 N/A 9.826±4.95 7.572±0.99 5.898±1.35 1.451±1.16 8.867±8.43 5.207±4.80 12.183±8.14 0.062±0.00 15.162±11.73 13.145±7.65 4.470±3.61
ENST00000591785 N/A N/A 1.633±0.00 N/A N/A N/A N/A N/A N/A N/A 1.487±0.00 3.495±0.00 17.177±0.00 0.687±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003PM CIL_0003PM_0001 CGP 11:13962689-14364506

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005615 IDA extracellular space
GO:0007155 IEA cell adhesion
GO:0031012 IDA extracellular matrix

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010029 spon1a spondin 1a protein_coding Danio_rerio
ENSMUSG00000038156 Spon1 spondin 1, (f-spondin) extracellular matrix protein protein_coding Mus_musculus

Loading