C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: COMMD3-BMI1 readthrough
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000269897 COMMD3-BMI1 9606 + 10:22316388-22329542 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000417470 COMMD3-BMI1-002 22316452-22329098 nonsense_mediated_decay
  ENST00000463409 COMMD3-BMI1-006 22316432-22326521 processed_transcript
  ENST00000475460 COMMD3-BMI1-004 22316388-22326558 protein_coding
  ENST00000489125 COMMD3-BMI1-005 22316431-22326521 protein_coding
  ENST00000602390 COMMD3-BMI1-001 22316409-22329542 protein_coding
  ENST00000602395 COMMD3-BMI1-003 22318301-22326521 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderMuscleOvaryPlacentaENST00000463409ENST00000475460ENST00000602390
Transcript ID Bladder Muscle Ovary Placenta
ENST00000463409 N/A N/A 21.074±0.00 17.241±0.00
ENST00000475460 4.574±0.00 N/A N/A N/A
ENST00000602390 N/A 2.647±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000780 CIL_000780_0002 CGP 10:22315974-22329542

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0000151 IDA ubiquitin ligase complex
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007379 TAS segment specification
GO:0008270 IEA:IDA zinc ion binding
GO:0010468 IMP regulation of gene expression
GO:0016568 IEA chromatin modification
GO:0030097 IEP hemopoiesis
GO:0031519 IDA PcG protein complex
GO:0035102 IDA PRC1 complex
GO:0046872 IEA metal ion binding
GO:0048146 IMP positive regulation of fibroblast proliferation
GO:0051443 IDA positive regulation of ubiquitin-protein transferase activity
GO:0071535 IPI RING-like zinc finger domain binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006010 bmi1a B lymphoma Mo-MLV insertion region 1a protein_coding Danio_rerio
ENSDARG00000013076 bmi1b B lymphoma Mo-MLV insertion region 1b protein_coding Danio_rerio

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