C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: COMMD3-BMI1 readthrough
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000602390 COMMD3-BMI1-001 ENSG00000269897 9606 + 10:22316409-22329542 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; MuscleENST00000602390
Transcript ID Muscle
ENST00000602390 2.647±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000780 CIL_000780_0002 CGP 10:22315974-22329542

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0000151 IDA ubiquitin ligase complex
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007379 TAS segment specification
GO:0008270 IEA:IDA zinc ion binding
GO:0010468 IMP regulation of gene expression
GO:0016568 IEA chromatin modification
GO:0030097 IEP hemopoiesis
GO:0031519 IDA PcG protein complex
GO:0035102 IDA PRC1 complex
GO:0046872 IEA metal ion binding
GO:0048146 IMP positive regulation of fibroblast proliferation
GO:0051443 IDA positive regulation of ubiquitin-protein transferase activity
GO:0071535 IPI RING-like zinc finger domain binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000051929 Bmi1-201 protein_coding Mus_musculus 0 1404
ENSMUST00000028071 Bmi1-001 protein_coding Mus_musculus 0 1402
ENSMUST00000182652 Gm5946-002 processed_transcript Mus_musculus 0 1343
ENSMUST00000182340 Gm5946-001 transcribed_processed_pseudogene Mus_musculus 0 1304
ENSMUST00000156284 Bmi1-003 protein_coding Mus_musculus 0 867
ENSMUST00000150834 Bmi1-002 protein_coding Mus_musculus 0 688
ENSMUST00000134734 Bmi1-004 protein_coding Mus_musculus 0 501
ENSMUST00000171845 Commd3-201 protein_coding Mus_musculus 0 497
ENSMUST00000061158 Commd3-001 protein_coding Mus_musculus 0 497
ENSDART00000012487 bmi1b-201 protein_coding Danio_rerio 0 477
ENSDART00000135417 bmi1b-001 protein_coding Danio_rerio 0 477
ENSMUST00000133828 Commd3-004 processed_transcript Mus_musculus 0 449
ENSMUST00000151974 Commd3-002 processed_transcript Mus_musculus 0 390
ENSMUST00000147365 Bmi1-005 protein_coding Mus_musculus 0 375
ENSMUST00000154519 Commd3-005 processed_transcript Mus_musculus 0 353
ENSMUST00000132014 Bmi1-006 processed_transcript Mus_musculus 0 350

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