C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cytoplasmic FMR1 interacting protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000273749 CYFIP1 9606 - 15:22867052-22981063 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000557890 CYFIP1-014 22873681-22875462 retained_intron
  ENST00000561263 CYFIP1-015 22872637-22875235 protein_coding
  ENST00000610365 CYFIP1-003 22869466-22980352 protein_coding
  ENST00000611832 CYFIP1-017 22943289-22980382 protein_coding
  ENST00000612288 CYFIP1-020 22914827-22926015 protein_coding
  ENST00000613006 CYFIP1-016 22943259-22981063 protein_coding
  ENST00000617556 CYFIP1-004 22867125-22917313 protein_coding
  ENST00000617928 CYFIP1-001 22867052-22980335 protein_coding
  ENST00000619037 CYFIP1-018 22944597-22980348 nonsense_mediated_decay
  ENST00000619290 CYFIP1-022 22903758-22915103 retained_intron
  ENST00000619348 CYFIP1-005 22869466-22905440 retained_intron
  ENST00000621036 CYFIP1-019 22943229-22946987 retained_intron
  ENST00000621105 CYFIP1-023 22909194-22912386 retained_intron
  ENST00000622576 CYFIP1-021 22916483-22917909 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000610365ENST00000617928ENST00000619348
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000610365 24.695±0.00 14.609±0.00 3.112±0.00 5.732±1.41 16.565±8.26 14.779±4.22 4.078±2.13 11.437±5.33 6.211±2.16 16.748±8.24 6.843±3.38 25.195±12.92 38.116±8.86 13.148±5.55
ENST00000617928 4.200±0.00 N/A 1.088±0.00 2.830±1.01 N/A 3.432±0.00 1.644±0.79 2.050±0.24 1.547±0.59 3.144±0.60 1.798±0.00 3.304±0.20 4.606±0.00 N/A
ENST00000619348 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.442±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001726 ISS ruffle
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005845 ISS mRNA cap binding complex
GO:0005925 IDA focal adhesion
GO:0008360 IEA regulation of cell shape
GO:0016601 IMP Rac protein signal transduction
GO:0030027 ISS lamellipodium
GO:0030032 ISS lamellipodium assembly
GO:0031209 IMP SCAR complex
GO:0031529 ISS ruffle organization
GO:0032403 IDA protein complex binding
GO:0043005 ISS neuron projection
GO:0045202 IEA synapse
GO:0048365 ISS Rac GTPase binding
GO:0048471 ISS perinuclear region of cytoplasm
GO:0048675 IMP axon extension
GO:0050890 IMP cognition
GO:0051015 ISS actin filament binding
GO:0070062 IDA extracellular vesicular exosome
GO:2000601 IMP positive regulation of Arp2/3 complex-mediated actin nucleation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044345 cyfip1 cytoplasmic FMR1 interacting protein 1 protein_coding Danio_rerio
ENSMUSG00000030447 Cyfip1 cytoplasmic FMR1 interacting protein 1 protein_coding Mus_musculus

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