C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cytoplasmic FMR1 interacting protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000617928 CYFIP1-001 ENSG00000273749 9606 - 15:22867052-22980335 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000617928
Transcript ID Adipose Bladder Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000617928 4.200±0.00 1.088±0.00 2.830±1.01 3.432±0.00 1.644±0.79 2.050±0.24 1.547±0.59 3.144±0.60 1.798±0.00 3.304±0.20 4.606±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001726 ISS ruffle
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005845 ISS mRNA cap binding complex
GO:0005925 IDA focal adhesion
GO:0008360 IEA regulation of cell shape
GO:0016601 IMP Rac protein signal transduction
GO:0030027 ISS lamellipodium
GO:0030032 ISS lamellipodium assembly
GO:0031209 IMP SCAR complex
GO:0031529 ISS ruffle organization
GO:0032403 IDA protein complex binding
GO:0043005 ISS neuron projection
GO:0045202 IEA synapse
GO:0048365 ISS Rac GTPase binding
GO:0048471 ISS perinuclear region of cytoplasm
GO:0048675 IMP axon extension
GO:0050890 IMP cognition
GO:0051015 ISS actin filament binding
GO:0070062 IDA extracellular vesicular exosome
GO:2000601 IMP positive regulation of Arp2/3 complex-mediated actin nucleation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000032629 Cyfip1-001 protein_coding Mus_musculus 0 5022
ENSMUST00000163845 Cyfip1-006 protein_coding Mus_musculus 0 4998
ENSMUST00000173497 Cyfip1-005 retained_intron Mus_musculus 0 4237
ENSDART00000065127 cyfip1-001 protein_coding Danio_rerio 0 2734
ENSMUST00000093165 Cyfip2-201 protein_coding Mus_musculus 0 2697
ENSMUST00000165599 Cyfip2-202 protein_coding Mus_musculus 0 2697
ENSMUST00000093166 Cyfip2-001 protein_coding Mus_musculus 0 2697
ENSDART00000104233 cyfip1-201 protein_coding Danio_rerio 0 2682
ENSMUST00000085255 Cyfip1-002 protein_coding Mus_musculus 0 2573
ENSMUST00000173267 Cyfip1-004 retained_intron Mus_musculus 0 2569
ENSDART00000149396 cyfip2-001 protein_coding Danio_rerio 0 2505
ENSDART00000020014 cyfip2-201 protein_coding Danio_rerio 0 2495
ENSDART00000123607 cyfip2-202 protein_coding Danio_rerio 0 2495
ENSMUST00000168271 Cyfip1-003 protein_coding Mus_musculus 0 1600
ENSMUST00000142017 Cyfip2-002 protein_coding Mus_musculus 0 1380
ENSMUST00000173384 Cyfip1-007 retained_intron Mus_musculus 0 736
ENSMUST00000174660 Cyfip1-009 retained_intron Mus_musculus 0 719
ENSMUST00000173783 Cyfip1-008 protein_coding Mus_musculus 0 536
ENSMUST00000174793 Cyfip1-010 retained_intron Mus_musculus 0 350
ENSDART00000147898 cyfip1-003 processed_transcript Danio_rerio 0 348

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