C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synergin, gamma
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000275066 SYNRG 9606 - 17:37514797-37609496 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000611910 SYNRG-015 37553416-37579416 processed_transcript
  ENST00000612223 SYNRG-001 37514797-37609496 protein_coding
  ENST00000612641 SYNRG-019 37515445-37517342 processed_transcript
  ENST00000612770 SYNRG-004 37584322-37585413 protein_coding
  ENST00000614000 SYNRG-003 37566849-37600988 retained_intron
  ENST00000614196 SYNRG-018 37536086-37542386 protein_coding
  ENST00000614941 SYNRG-014 37518887-37609381 protein_coding
  ENST00000616179 SYNRG-012 37518461-37609386 protein_coding
  ENST00000618829 SYNRG-007 37540626-37576480 retained_intron
  ENST00000619541 SYNRG-013 37518887-37609381 protein_coding
  ENST00000619914 SYNRG-009 37519010-37537478 retained_intron
  ENST00000619976 SYNRG-011 37571833-37609438 processed_transcript
  ENST00000620424 SYNRG-016 37585342-37609472 protein_coding
  ENST00000621136 SYNRG-006 37517830-37609411 protein_coding
  ENST00000621605 SYNRG-017 37553987-37568920 processed_transcript
  ENST00000622045 SYNRG-008 37518887-37609381 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000612223ENST00000614941ENST00000616179ENST00000618829ENST00000619541ENST00000621136ENST00000622045
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000612223 2.596±0.00 2.038±0.00 1.162±0.51 1.066±0.46 N/A 1.385±0.00 1.238±0.00 0.248±0.00 2.282±0.59 0.813±0.66 1.411±0.45 1.013±0.25 N/A
ENST00000614941 N/A 3.286±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000616179 N/A N/A N/A 1.461±0.00 N/A N/A N/A 0.343±0.00 1.391±0.00 1.945±0.00 N/A 1.271±0.08 4.110±0.70
ENST00000618829 N/A N/A N/A 1.432±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000619541 N/A N/A 0.631±0.00 N/A N/A N/A 1.038±0.00 N/A N/A N/A N/A N/A 3.036±0.00
ENST00000621136 N/A N/A 0.821±0.00 1.015±0.00 1.929±0.00 N/A 0.538±0.00 2.014±0.00 2.556±0.00 N/A 1.799±0.58 1.311±0.00 4.983±0.00
ENST00000622045 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.311±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005HZ CIL_0005HZ_0002 CGP 17:37489831-37609496

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005737 TAS cytoplasm
GO:0005794 TAS Golgi apparatus
GO:0006886 TAS intracellular protein transport
GO:0006897 IEA endocytosis
GO:0030121 TAS AP-1 adaptor complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000073926 synrg synergin, gamma protein_coding Danio_rerio
ENSMUSG00000034940 Synrg synergin, gamma protein_coding Mus_musculus

Loading