C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synergin, gamma
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000621136 SYNRG-006 ENSG00000275066 9606 - 17:37517830-37609411 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000621136
Transcript ID Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000621136 0.821±0.00 1.015±0.00 1.929±0.00 0.538±0.00 2.014±0.00 2.556±0.00 1.799±0.58 1.311±0.00 4.983±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005HZ CIL_0005HZ_0002 CGP 17:37489831-37609496

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005737 TAS cytoplasm
GO:0005794 TAS Golgi apparatus
GO:0006886 TAS intracellular protein transport
GO:0006897 IEA endocytosis
GO:0030121 TAS AP-1 adaptor complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000049714 Synrg-002 protein_coding Mus_musculus 0 2964
ENSMUST00000092834 Synrg-001 protein_coding Mus_musculus 0 2355
ENSMUST00000183456 Synrg-009 protein_coding Mus_musculus 0 1648
ENSMUST00000183714 Synrg-007 protein_coding Mus_musculus 0 1648
ENSMUST00000184239 Synrg-008 retained_intron Mus_musculus 0 1537
ENSMUST00000138676 Synrg-006 protein_coding Mus_musculus 0 553
ENSMUST00000148901 Synrg-003 processed_transcript Mus_musculus 0 333
ENSMUST00000132887 Synrg-005 retained_intron Mus_musculus 0 318
ENSMUST00000142966 Synrg-004 retained_intron Mus_musculus 0 246

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