C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: U2 small nuclear RNA auxiliary factor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000275895 U2AF1 9606 - 21:6484623-6499261 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000610664 U2AF1-003 6484623-6499200 protein_coding
  ENST00000619610 U2AF1-002 6484709-6499202 protein_coding
  ENST00000620065 U2AF1-001 6484626-6499202 nonsense_mediated_decay
  ENST00000623375 U2AF1-005 6484623-6496930 protein_coding
  ENST00000624739 U2AF1-004 6484661-6499261 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLungTestisENST00000623375ENST00000624739
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Lung Testis
ENST00000623375 N/A 0.032±0.00 0.008±0.00 N/A N/A 0.024±0.00 N/A N/A
ENST00000624739 0.003±0.00 0.003±0.00 0.003±0.00 0.002±0.00 0.019±0.00 N/A 0.004±0.00 0.005±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000MQ CIL_0000MQ_0003 CGP 21:6444869-6499261

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005681 IDA spliceosomal complex
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0006397 TAS mRNA processing
GO:0006406 TAS mRNA export from nucleus
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0015030 TAS Cajal body
GO:0016607 ISS nuclear speck
GO:0031124 TAS mRNA 3'-end processing
GO:0044822 IDA poly(A) RNA binding
GO:0046872 IEA metal ion binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015325 u2af1 U2(RNU2) small nuclear RNA auxiliary factor 1 protein_coding Danio_rerio

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