C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SNAP-associated protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000001018 Snapin 10090 - 3:90488026-90491033 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000107351 Snapin-004 90489000-90490792 retained_intron
  ENSMUST00000107352 Snapin-005 90488026-90490428 retained_intron
  ENSMUST00000149884 Snapin-001 90488034-90491033 protein_coding
  ENSMUST00000184877 Snapin-002 90488373-90491024 nonsense_mediated_decay
  ENSMUST00000185005 Snapin-003 90488370-90490993 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000107351ENSMUST00000107352ENSMUST00000149884ENSMUST00000184877ENSMUST00000185005
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000107351 N/A N/A N/A 7.050±0.00 N/A N/A N/A N/A N/A N/A N/A 22.437±3.18 19.081±4.07 10.838±0.00
ENSMUST00000107352 N/A N/A 10.542±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 13.457±2.04 N/A N/A
ENSMUST00000149884 19.021±3.47 67.502±6.11 20.299±2.97 9.980±5.12 22.723±3.37 13.046±0.63 15.828±6.24 10.960±0.80 7.409±0.75 24.949±1.74 11.687±1.34 29.468±10.73 13.382±6.36 10.641±4.46
ENSMUST00000184877 7.053±0.00 N/A 11.775±2.41 N/A 9.025±0.00 N/A 15.565±3.83 N/A 8.061±0.00 N/A 20.665±5.70 N/A N/A 6.776±0.00
ENSMUST00000185005 5.988±0.00 N/A 9.640±0.00 N/A 25.748±18.02 N/A 5.869±0.83 N/A N/A 8.409±0.00 13.036±5.18 20.797±0.75 14.421±0.00 N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000149 ISO SNARE binding
GO:0005515 IPI protein binding
GO:0005730 IEA nucleolus
GO:0005794 IEA Golgi apparatus
GO:0005829 IDA cytosol
GO:0006886 IEA intracellular protein transport
GO:0007268 IMP synaptic transmission
GO:0008021 IEA synaptic vesicle
GO:0008089 IMP anterograde axon cargo transport
GO:0008333 IEA endosome to lysosome transport
GO:0010977 IGI negative regulation of neuron projection development
GO:0016020 IEA membrane
GO:0016079 ISO synaptic vesicle exocytosis
GO:0016188 IMP synaptic vesicle maturation
GO:0017156 TAS calcium ion-dependent exocytosis
GO:0030054 IEA cell junction
GO:0030141 ISS secretory granule
GO:0031083 IDA BLOC-1 complex
GO:0031175 NAS neuron projection development
GO:0031629 IMP synaptic vesicle fusion to presynaptic membrane
GO:0043393 IEA regulation of protein binding
GO:0045202 ISO synapse
GO:0048471 ISS perinuclear region of cytoplasm
GO:0048489 ISS synaptic vesicle transport
GO:0048490 IMP anterograde synaptic vesicle transport
GO:0072553 IMP terminal button organization
GO:0097352 IMP autophagic vacuole maturation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062382 snapin SNAP-associated protein protein_coding Danio_rerio
ENSG00000143553 SNAPIN SNAP-associated protein protein_coding Homo_sapiens

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