C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: intercellular adhesion molecule 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000001029 Icam2 10090 - 11:106377656-106388075 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000001055 Icam2-001 106377656-106382781 protein_coding
  ENSMUST00000106809 Icam2-002 106381045-106382996 retained_intron
  ENSMUST00000106813 Icam2-004 106378806-106388072 protein_coding
  ENSMUST00000141146 Icam2-003 106380688-106388075 protein_coding
  ENSMUST00000173795 Icam2-005 106378560-106380801 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000001055ENSMUST00000106813ENSMUST00000141146ENSMUST00000173795
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000001055 17.285±4.37 8.794±4.78 3.088±1.20 2.682±1.83 10.615±1.18 1.787±0.73 8.382±2.00 8.900±1.21 3.711±3.08 125.636±27.69 3.594±1.28 7.253±4.77 3.481±1.47 0.406±0.22
ENSMUST00000106813 N/A N/A N/A N/A N/A N/A N/A N/A 3.877±0.00 N/A N/A 5.166±0.00 N/A N/A
ENSMUST00000141146 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.995±0.00 3.229±0.00 0.120±0.00
ENSMUST00000173795 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.070±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B9 CIL_0009B9_0002 VISTA 11:105834084-106435839
CIL_0002P5 CIL_0002P5_0002 CGP 11:106365472-106388075
CIL_0006GW CIL_0006GW_0002 CGP 11:106377656-106487852

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001931 IDA uropod
GO:0005178 IEA integrin binding
GO:0005515 IPI protein binding
GO:0005886 IDA plasma membrane
GO:0005887 IDA integral component of plasma membrane
GO:0016020 IEA membrane
GO:0016337 IEA single organismal cell-cell adhesion
GO:0070062 IEA extracellular vesicular exosome
GO:0071944 IDA cell periphery

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000108622 ICAM2 intercellular adhesion molecule 2 protein_coding Homo_sapiens

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