C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0006GW_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000108622-ENSG00000178607 CGP 9606 17:64002594-64130819
GeneTranscriptPositionBiotype
ENSG00000178607 (ERN1)
endoplasmic reticulum to nucleus signaling 1
ENST00000433197 (ERN1-001) 64039142-64130125 protein_coding
ENST00000577567 (ERN1-005) 64068237-64080474 processed_transcript
ENST00000579249 (ERN1-006) 64067860-64072096 retained_intron
ENST00000583028 (ERN1-002) 64097888-64130144 retained_intron
ENST00000583077 (ERN1-007) 64053967-64054767 retained_intron
ENST00000583896 (ERN1-004) 64060576-64066984 retained_intron
ENST00000584041 (ERN1-003) 64075077-64130142 retained_intron
ENST00000606895 (ERN1-008) 64128752-64130819 protein_coding
ENSG00000224383 (PRR29)
proline rich 29
ENST00000225760 (PRR29-006) 63998455-64004285 retained_intron
ENST00000412177 (PRR29-001) 63998351-64004304 protein_coding
ENST00000425164 (PRR29-002) 63998351-64002516 protein_coding
ENST00000577953 (PRR29-008) 63998351-64001969 protein_coding
ENST00000579184 (PRR29-003) 63998351-64002250 protein_coding
ENST00000579222 (PRR29-007) 64000857-64002493 retained_intron
ENST00000580752 (PRR29-009) 63998355-64002049 protein_coding
ENST00000582530 (PRR29-005) 63998355-64003113 retained_intron
ENST00000582540 (PRR29-004) 63998351-64002220 protein_coding
ENST00000583891 (PRR29-010) 63998355-64001753 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_0006GW_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000001029-ENSMUSG00000020715 CGP 10090 11:106377656-106487852
GeneTranscriptPositionBiotype
ENSMUSG00000001029 (Icam2)
intercellular adhesion molecule 2
ENSMUST00000001055 (Icam2-001) 106377656-106382781 protein_coding
ENSMUST00000106809 (Icam2-002) 106381045-106382996 retained_intron
ENSMUST00000106813 (Icam2-004) 106378806-106388072 protein_coding
ENSMUST00000141146 (Icam2-003) 106380688-106388075 protein_coding
ENSMUST00000173795 (Icam2-005) 106378560-106380801 protein_coding
ENSMUSG00000020715 (Ern1)
endoplasmic reticulum (ER) to nucleus signalling 1
ENSMUST00000001059 (Ern1-001) 106394650-106487796 protein_coding
ENSMUST00000106799 (Ern1-004) 106458556-106487803 protein_coding
ENSMUST00000106800 (Ern1-005) 106434681-106487808 protein_coding
ENSMUST00000106801 (Ern1-002) 106413766-106487836 protein_coding
ENSMUST00000131895 (Ern1-003) 106397451-106487852 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006GW_0001ENSG00000178607ENST00000433197ENST00000577567ENST00000579249ENST00000583028ENST00000583077ENST00000583896ENST00000584041ENST00000606895ENSG00000224383ENST00000225760ENST00000412177ENST00000425164ENST00000577953ENST00000579184ENST00000579222ENST00000580752ENST00000582530ENST00000582540ENST00000583891CIL_0006GW_0002ENSMUSG00000001029ENSMUST00000001055ENSMUST00000106809ENSMUST00000106813ENSMUST00000141146ENSMUST00000173795ENSMUSG00000020715ENSMUST00000001059ENSMUST00000106799ENSMUST00000106800ENSMUST00000106801ENSMUST00000131895
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006GW_0001ENSG00000178607ENST00000433197ENST00000606895ENSG00000224383ENST00000225760ENST00000412177ENST00000582530ENST00000582540CIL_0006GW_0002ENSMUSG00000001029ENSMUST00000001055ENSMUST00000106813ENSMUST00000141146ENSMUST00000173795ENSMUSG00000020715ENSMUST00000001059ENSMUST00000106799ENSMUST00000106801ENSMUST00000131895
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000178607 ENST00000433197 1.213±0.00 1.333±0.00 N/A 0.288±0.00 N/A 0.626±0.16 0.446±0.31 0.750±0.00 0.861±0.53 1.568±0.49 0.759±0.09 2.044±1.70 0.850±0.14 0.757±0.00
ENST00000577567 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000579249 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583028 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583077 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583896 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584041 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000606895 1.622±0.00 N/A N/A 0.836±0.00 2.914±0.00 N/A 0.390±0.00 N/A N/A 7.785±4.57 0.575±0.00 3.413±0.48 1.790±0.46 1.549±0.45
ENSG00000224383 ENST00000225760 N/A N/A 0.149±0.00 N/A N/A N/A N/A N/A 0.188±0.00 N/A N/A N/A N/A N/A
ENST00000412177 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.031±0.00 N/A N/A
ENST00000425164 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000577953 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000579184 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000579222 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000580752 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000582530 N/A N/A N/A 0.369±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000582540 N/A N/A N/A N/A N/A 0.576±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583891 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000001029 ENSMUST00000001055 17.285±4.37 8.794±4.78 3.088±1.20 2.682±1.83 10.615±1.18 1.787±0.73 8.382±2.00 8.900±1.21 3.711±3.08 125.636±27.69 3.594±1.28 7.253±4.77 3.481±1.47 0.406±0.22
ENSMUST00000106809 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000106813 N/A N/A N/A N/A N/A N/A N/A N/A 3.877±0.00 N/A N/A 5.166±0.00 N/A N/A
ENSMUST00000141146 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.995±0.00 3.229±0.00 0.120±0.00
ENSMUST00000173795 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.070±0.00 N/A N/A
ENSMUSG00000020715 ENSMUST00000001059 4.716±1.65 36.748±3.79 3.834±1.07 2.521±1.03 5.987±2.57 3.920±1.86 2.343±0.29 3.708±1.13 8.020±4.84 5.582±3.34 1.676±0.21 14.487±5.98 9.142±4.06 2.473±1.20
ENSMUST00000106799 N/A 481.874±45.86 N/A N/A N/A N/A N/A N/A N/A N/A N/A 81.016±14.71 N/A N/A
ENSMUST00000106800 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000106801 N/A N/A N/A N/A 6.674±1.09 7.586±1.89 N/A 3.448±0.00 N/A 7.859±0.94 N/A N/A N/A N/A
ENSMUST00000131895 N/A 18.866±5.80 N/A N/A N/A 3.374±0.00 N/A 1.240±0.00 N/A N/A N/A 11.412±2.33 N/A 0.752±0.07

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