C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Sec24 related gene family, member B (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000001052 Sec24b 10090 - 3:129982759-130061553 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000001079 Sec24b-001 129982759-130060907 protein_coding
  ENSMUST00000164758 Sec24b-008 129983612-129984282 processed_transcript
  ENSMUST00000165873 Sec24b-002 129990412-130040863 protein_coding
  ENSMUST00000165889 Sec24b-004 130007385-130040833 retained_intron
  ENSMUST00000168644 Sec24b-005 130007411-130041139 protein_coding
  ENSMUST00000168675 Sec24b-003 130041256-130061553 protein_coding
  ENSMUST00000168908 Sec24b-006 130009785-130030867 retained_intron
  ENSMUST00000170163 Sec24b-009 129983443-129984520 retained_intron
  ENSMUST00000172324 Sec24b-007 129988757-129990497 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000001079ENSMUST00000164758ENSMUST00000165873ENSMUST00000165889ENSMUST00000170163
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000001079 6.232±0.60 7.304±1.42 5.277±0.07 8.261±4.39 7.231±4.54 7.255±1.70 1.616±0.49 4.239±0.45 2.146±0.78 7.676±1.85 1.587±0.63 12.144±4.14 10.419±2.21 20.864±8.60
ENSMUST00000164758 N/A N/A N/A 41.029±0.00 N/A N/A N/A N/A N/A N/A N/A 72.023±0.00 69.718±0.00 173.583±0.00
ENSMUST00000165873 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.685±0.00 9.822±0.22 13.029±0.06 N/A
ENSMUST00000165889 N/A 9.037±0.66 N/A N/A 9.892±0.80 9.307±1.52 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000170163 N/A N/A 10.815±1.07 N/A N/A N/A N/A N/A N/A N/A N/A 24.994±0.00 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001843 IGI neural tube closure
GO:0002093 IGI auditory receptor cell morphogenesis
GO:0003151 IMP outflow tract morphogenesis
GO:0005515 IPI protein binding
GO:0006886 IEA intracellular protein transport
GO:0006888 IEA ER to Golgi vesicle-mediated transport
GO:0008270 IEA zinc ion binding
GO:0021747 IGI cochlear nucleus development
GO:0030127 IDA COPII vesicle coat
GO:0030134 ISO ER to Golgi transport vesicle
GO:0035909 IMP aorta morphogenesis
GO:0060088 IGI auditory receptor cell stereocilium organization
GO:0060425 IMP lung morphogenesis
GO:0060463 IMP lung lobe morphogenesis
GO:0060982 IMP coronary artery morphogenesis
GO:0061156 IMP pulmonary artery morphogenesis
GO:0072358 IMP cardiovascular system development
GO:0090178 IMP regulation of establishment of planar polarity involved in neural tube closure
GO:1901301 IMP regulation of cargo loading into COPII-coated vesicle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000071906 SEC24B SEC24 family member B protein_coding Danio_rerio
ENSG00000138802 SEC24B SEC24 family member B protein_coding Homo_sapiens

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