C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal RNA processing 15 homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000001305 Rrp15 10090 - 1:186720978-186749358 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000001339 Rrp15-001 186720978-186749358 protein_coding
  ENSMUST00000162336 Rrp15-002 186721092-186749325 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000001339ENSMUST00000162336
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000001339 1.376±0.55 1.291±0.35 8.358±0.89 5.047±2.67 2.034±0.45 1.140±0.52 1.632±0.30 2.632±0.58 7.621±6.79 1.461±0.52 4.367±0.38 7.051±9.40 26.398±23.29 8.339±10.38
ENSMUST00000162336 0.518±0.34 0.453±0.23 0.433±0.00 0.855±0.21 0.335±0.15 0.350±0.16 0.122±0.05 0.330±0.20 0.179±0.05 0.572±0.11 N/A 0.951±0.39 N/A 0.259±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00086U CIL_00086U_0002 VISTA 1:186608316-187210077
CIL_00086S CIL_00086S_0002 VISTA 1:186622310-187223505
CIL_0007JY CIL_0007JY_0002 UCNEbase 1:186701249-188943182

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0005739 IEA mitochondrion
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000013478 rrp15 ribosomal RNA processing 15 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSG00000067533 RRP15 ribosomal RNA processing 15 homolog (S. cerevisiae) protein_coding Homo_sapiens

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