Source ID |
Type |
Tax ID |
Position |
ESRRG |
UCNEbase |
7955 |
16:3401465-3401656 |
Gene | Transcript | Position | Biotype |
Notice (8): Undefined index: CIL_0007JY_0003 [APP/View/Region/show.ctp, line 46]Code Context
<tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007JY_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007JY_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007JY_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000042781' => 'Usher syndrome 2A (autosomal recessive, mild)',
'ENSG00000067533' => 'ribosomal RNA processing 15 homolog (S. cerevisiae)',
'ENSG00000092969' => 'transforming growth factor, beta 2',
'ENSG00000092978' => 'G patch domain containing 2',
'ENSG00000162814' => 'spermatogenesis associated 17',
'ENSG00000196482' => 'estrogen-related receptor gamma',
'ENSG00000201493' => 'RNA, U1 small nuclear 141, pseudogene',
'ENSG00000223375' => null,
'ENSG00000226013' => 'mitochondrial ribosomal protein S18B pseudogene 1',
'ENSG00000228247' => 'ubiquitin B pseudogene 2',
'ENSG00000229016' => null,
'ENSG00000229242' => null,
'ENSG00000230714' => null,
'ENSG00000231814' => 'long intergenic non-protein coding RNA 210',
'ENSG00000232100' => null,
'ENSG00000232480' => 'TGFB2 antisense RNA 1 (head to head)',
'ENSG00000233620' => null,
'ENSG00000234070' => 'SPATA17 antisense RNA 1',
'ENSG00000236292' => null,
'ENSMUSG00000001305' => 'ribosomal RNA processing 15 homolog (S. cerevisiae)',
'ENSMUSG00000026609' => 'Usher syndrome 2A (autosomal recessive, mild)',
'ENSMUSG00000026610' => 'estrogen-related receptor gamma',
'ENSMUSG00000026611' => 'spermatogenesis associated 17',
'ENSMUSG00000039210' => 'G patch domain containing 2',
'ENSMUSG00000039224' => 'DNA segment, Chr 1, Pasteur Institute 1',
'ENSMUSG00000039239' => 'transforming growth factor, beta 2',
'ENSMUSG00000077235' => 'predicted gene, 25095',
'ENSMUSG00000077884' => 'predicted gene, 24557',
'ENSMUSG00000084550' => 'predicted gene, 25269',
'ENSMUSG00000089730' => 'RIKEN cDNA 1700007P06 gene',
'ENSMUSG00000089831' => 'predicted gene 15508',
'ENSMUSG00000089947' => 'predicted gene 15509',
'ENSMUSG00000097784' => 'RIKEN cDNA A430105J06 gene',
'ENSMUSG00000097935' => 'predicted gene 3809',
'ENSMUSG00000100393' => 'predicted gene 29491',
'ENSDARG00000004861' => 'estrogen-related receptor gamma a',
'ENSDARG00000029482' => 'Usher syndrome 2A (autosomal recessive, mild)',
'ENSDARG00000054414' => 'spermatogenesis associated 17',
'ENSDARG00000085757' => '5S ribosomal RNA',
'ENSDARG00000097115' => 'si:dkey-27l15.1',
'ENSDARG00000097219' => 'si:ch211-214o2.3',
'ENSDARG00000097668' => 'si:ch211-139l2.1',
'ENSDARG00000097817' => 'si:ch211-214o2.2'
),
'gene_name_arr' => array(
'ENSG00000042781' => 'USH2A',
'ENSG00000067533' => 'RRP15',
'ENSG00000092969' => 'TGFB2',
'ENSG00000092978' => 'GPATCH2',
'ENSG00000162814' => 'SPATA17',
'ENSG00000196482' => 'ESRRG',
'ENSG00000201493' => 'RNU1-141P',
'ENSG00000223375' => 'RP11-224O19.5',
'ENSG00000226013' => 'MRPS18BP1',
'ENSG00000228247' => 'UBBP2',
'ENSG00000229016' => 'RP11-224O19.4',
'ENSG00000229242' => 'RP5-1111A8.3',
'ENSG00000230714' => 'RP11-152L7.1',
'ENSG00000231814' => 'LINC00210',
'ENSG00000232100' => 'RP11-152L7.2',
'ENSG00000232480' => 'TGFB2-AS1',
'ENSG00000233620' => 'RP11-22M7.2',
'ENSG00000234070' => 'SPATA17-AS1',
'ENSG00000236292' => 'RP5-1099E6.3',
'ENSMUSG00000001305' => 'Rrp15',
'ENSMUSG00000026609' => 'Ush2a',
'ENSMUSG00000026610' => 'Esrrg',
'ENSMUSG00000026611' => 'Spata17',
'ENSMUSG00000039210' => 'Gpatch2',
'ENSMUSG00000039224' => 'D1Pas1',
'ENSMUSG00000039239' => 'Tgfb2',
'ENSMUSG00000077235' => 'Gm25095',
'ENSMUSG00000077884' => 'Gm24557',
'ENSMUSG00000084550' => 'Gm25269',
'ENSMUSG00000089730' => '1700007P06Rik',
'ENSMUSG00000089831' => 'Gm15508',
'ENSMUSG00000089947' => 'Gm15509',
'ENSMUSG00000097784' => 'A430105J06Rik',
'ENSMUSG00000097935' => 'Gm3809',
'ENSMUSG00000100393' => 'RP24-276N20.2',
'ENSDARG00000004861' => 'esrrga',
'ENSDARG00000029482' => 'ush2a',
'ENSDARG00000054414' => 'spata17',
'ENSDARG00000085757' => '5S_rRNA',
'ENSDARG00000097115' => 'si:dkey-27l15.1',
'ENSDARG00000097219' => 'si:ch211-214o2.3',
'ENSDARG00000097668' => 'si:ch211-139l2.1',
'ENSDARG00000097817' => 'si:ch211-214o2.2'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 31 => 'Adrenal',
(int) 65 => 'Bladder',
(int) 90 => 'Brain',
(int) 129 => 'Breast',
(int) 166 => 'Colon',
(int) 195 => 'Heart',
(int) 234 => 'Kidney',
(int) 270 => 'Liver',
(int) 308 => 'Lung',
(int) 339 => 'Muscle',
(int) 371 => 'Ovary',
(int) 413 => 'Placenta',
(int) 443 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 112,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000307340' => array(
'start' => '215622894',
'end' => '216423396',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USH2A-002'
),
'ENST00000366942' => array(
'start' => '216173946',
'end' => '216423396',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USH2A-001'
),
'ENST00000366943' => array(
'start' => '215622894',
'end' => '216423396',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USH2A-201'
),
'ENST00000463147' => array(
'start' => '216083380',
'end' => '216085108',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USH2A-004'
),
'ENST00000481786' => array(
'start' => '216083370',
'end' => '216089139',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USH2A-003'
),
'ENST00000366932' => array(
'start' => '218285287',
'end' => '218337983',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RRP15-001'
),
'ENST00000491428' => array(
'start' => '218285342',
'end' => '218302671',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'RRP15-002'
),
'ENST00000366929' => array(
'start' => '218346235',
'end' => '218444619',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TGFB2-002'
),
'ENST00000366930' => array(
'start' => '218346235',
'end' => '218444619',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TGFB2-001'
),
'ENST00000479322' => array(
'start' => '218434126',
'end' => '218442141',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TGFB2-004'
),
'ENST00000488793' => array(
'start' => '218347038',
'end' => '218434312',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TGFB2-003'
),
'ENST00000366934' => array(
'start' => '217608184',
'end' => '217631082',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'GPATCH2-002'
),
'ENST00000366935' => array(
'start' => '217426992',
'end' => '217631082',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'GPATCH2-001'
),
'ENST00000470014' => array(
'start' => '217492501',
'end' => '217610400',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'GPATCH2-005'
),
'ENST00000485274' => array(
'start' => '217498180',
'end' => '217610379',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'GPATCH2-003'
),
'ENST00000489246' => array(
'start' => '217491506',
'end' => '217498764',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'GPATCH2-004'
),
'ENST00000366933' => array(
'start' => '217631324',
'end' => '217871696',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SPATA17-001'
),
'ENST00000470448' => array(
'start' => '217631324',
'end' => '217774424',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SPATA17-002'
),
'ENST00000471021' => array(
'start' => '217801718',
'end' => '217867588',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SPATA17-004'
),
'ENST00000491809' => array(
'start' => '217862775',
'end' => '217867133',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SPATA17-005'
),
'ENST00000492747' => array(
'start' => '217737844',
'end' => '217801768',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SPATA17-003'
),
'ENST00000359162' => array(
'start' => '216503254',
'end' => '217089605',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ESRRG-004'
),
'ENST00000360012' => array(
'start' => '216503254',
'end' => '216805367',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ESRRG-005'
),
'ENST00000361395' => array(
'start' => '216503254',
'end' => '216939673',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ESRRG-002'
),
'ENST00000361525' => array(
'start' => '216503246',
'end' => '217089645',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ESRRG-201'
),
'ENST00000366937' => array(
'start' => '216503254',
'end' => '216723453',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ESRRG-006'
),
'ENST00000366938' => array(
'start' => '216503254',
'end' => '216939673',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ESRRG-007'
),
'ENST00000366940' => array(
'start' => '216503251',
'end' => '217137755',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ESRRG-003'
),
'ENST00000391890' => array(
'start' => '216503246',
'end' => '216723472',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ESRRG-202'
),
'ENST00000408911' => array(
'start' => '216503254',
'end' => '216723453',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ESRRG-001'
),
'ENST00000459825' => array(
'start' => '216865117',
'end' => '217089613',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ESRRG-020'
),
'ENST00000459955' => array(
'start' => '216677312',
'end' => '216723452',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ESRRG-016'
),
'ENST00000463665' => array(
'start' => '216505454',
'end' => '217076931',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ESRRG-011'
),
'ENST00000469486' => array(
'start' => '216677201',
'end' => '216723416',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ESRRG-017'
),
'ENST00000469913' => array(
'start' => '216707420',
'end' => '216723429',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ESRRG-018'
),
'ENST00000471371' => array(
'start' => '216862230',
'end' => '217089636',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ESRRG-009'
),
'ENST00000475275' => array(
'start' => '216519152',
'end' => '216723332',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ESRRG-008'
),
'ENST00000477799' => array(
'start' => '216855042',
'end' => '217078360',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ESRRG-015'
),
'ENST00000481543' => array(
'start' => '216677328',
'end' => '216723425',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ESRRG-019'
),
'ENST00000487276' => array(
'start' => '216505490',
'end' => '216939670',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ESRRG-013'
),
'ENST00000488947' => array(
'start' => '216865061',
'end' => '217090547',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ESRRG-014'
),
'ENST00000493603' => array(
'start' => '216503254',
'end' => '217137754',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ESRRG-010'
),
'ENST00000493748' => array(
'start' => '216506788',
'end' => '217076889',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ESRRG-012'
),
'ENST00000586199' => array(
'start' => '216567988',
'end' => '217078288',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ESRRG-023'
),
'ENST00000616180' => array(
'start' => '216503246',
'end' => '216715253',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ESRRG-203'
),
'ENST00000364623' => array(
'start' => '218129795',
'end' => '218129952',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU1-141P-201'
),
'ENST00000444678' => array(
'start' => '218338541',
'end' => '218338756',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-224O19.5-001'
),
'ENST00000414228' => array(
'start' => '216201635',
'end' => '216201826',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'MRPS18BP1-001'
),
'ENST00000376781' => array(
'start' => '217850403',
'end' => '217850633',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'UBBP2-001'
),
'ENST00000434965' => array(
'start' => '218301262',
'end' => '218301972',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-224O19.4-001'
),
'ENST00000414995' => array(
'start' => '215886582',
'end' => '215901464',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP5-1111A8.3-001'
),
'ENST00000420347' => array(
'start' => '218031835',
'end' => '218033660',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-152L7.1-001'
),
'ENST00000431637' => array(
'start' => '217892900',
'end' => '217920804',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00210-001'
),
'ENST00000456026' => array(
'start' => '218043505',
'end' => '218059140',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-152L7.2-001'
),
'ENST00000414452' => array(
'start' => '218344196',
'end' => '218345678',
'transcript_biotype' => 'antisense',
'transcript_name' => 'TGFB2-AS1-001'
),
'ENST00000430890' => array(
'start' => '216072729',
'end' => '216086905',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-22M7.2-003'
),
'ENST00000442606' => array(
'start' => '216079073',
'end' => '216086905',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-22M7.2-002'
),
'ENST00000445619' => array(
'start' => '216072806',
'end' => '216086905',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-22M7.2-004'
),
'ENST00000446411' => array(
'start' => '216072465',
'end' => '216086917',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-22M7.2-001'
),
'ENST00000415765' => array(
'start' => '217781198',
'end' => '217785120',
'transcript_biotype' => 'antisense',
'transcript_name' => 'SPATA17-AS1-001'
),
'ENST00000420867' => array(
'start' => '216194051',
'end' => '216204366',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP5-1099E6.3-001'
),
'ENSMUST00000001339' => array(
'start' => '186720978',
'end' => '186749358',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Rrp15-001'
),
'ENSMUST00000162336' => array(
'start' => '186721092',
'end' => '186749325',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Rrp15-002'
),
'ENSMUST00000060479' => array(
'start' => '188263034',
'end' => '188965041',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ush2a-001'
),
'ENSMUST00000124358' => array(
'start' => '188262035',
'end' => '188452401',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Ush2a-002'
),
'ENSMUST00000127077' => array(
'start' => '188953744',
'end' => '188964965',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ush2a-005'
),
'ENSMUST00000142159' => array(
'start' => '188537807',
'end' => '188678687',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Ush2a-004'
),
'ENSMUST00000142189' => array(
'start' => '188262023',
'end' => '188357520',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Ush2a-003'
),
'ENSMUST00000027906' => array(
'start' => '187997827',
'end' => '188214885',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Esrrg-001'
),
'ENSMUST00000110938' => array(
'start' => '187997868',
'end' => '188214884',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Esrrg-002'
),
'ENSMUST00000110939' => array(
'start' => '187609029',
'end' => '188214386',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Esrrg-003'
),
'ENSMUST00000127489' => array(
'start' => '187608791',
'end' => '188043502',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Esrrg-004'
),
'ENSMUST00000152927' => array(
'start' => '187609696',
'end' => '187793742',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Esrrg-005'
),
'ENSMUST00000027908' => array(
'start' => '187048407',
'end' => '187215446',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Spata17-201'
),
'ENSMUST00000110945' => array(
'start' => '187135293',
'end' => '187215421',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Spata17-003'
),
'ENSMUST00000183469' => array(
'start' => '187188861',
'end' => '187215446',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Spata17-002'
),
'ENSMUST00000183656' => array(
'start' => '187135300',
'end' => '187143084',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Spata17-006'
),
'ENSMUST00000183819' => array(
'start' => '187044648',
'end' => '187215465',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Spata17-001'
),
'ENSMUST00000183931' => array(
'start' => '187117263',
'end' => '187215437',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Spata17-007'
),
'ENSMUST00000183996' => array(
'start' => '187112484',
'end' => '187142904',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Spata17-005'
),
'ENSMUST00000184543' => array(
'start' => '187135293',
'end' => '187143097',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Spata17-004'
),
'ENSMUST00000044812' => array(
'start' => '187215544',
'end' => '187234339',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gpatch2-007'
),
'ENSMUST00000065573' => array(
'start' => '187215511',
'end' => '187351427',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gpatch2-201'
),
'ENSMUST00000097443' => array(
'start' => '187215508',
'end' => '187235831',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gpatch2-002'
),
'ENSMUST00000110943' => array(
'start' => '187215522',
'end' => '187351704',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gpatch2-001'
),
'ENSMUST00000159748' => array(
'start' => '187215546',
'end' => '187233901',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Gpatch2-008'
),
'ENSMUST00000160471' => array(
'start' => '187215743',
'end' => '187350723',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gpatch2-006'
),
'ENSMUST00000160481' => array(
'start' => '187215511',
'end' => '187349640',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Gpatch2-003'
),
'ENSMUST00000160570' => array(
'start' => '187226180',
'end' => '187351427',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gpatch2-004'
),
'ENSMUST00000161260' => array(
'start' => '187215538',
'end' => '187305043',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Gpatch2-005'
),
'ENSMUST00000045108' => array(
'start' => '186967416',
'end' => '186970627',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'D1Pas1-001'
),
'ENSMUST00000045288' => array(
'start' => '186623186',
'end' => '186705992',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tgfb2-201'
),
'ENSMUST00000104047' => array(
'start' => '188622923',
'end' => '188623053',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'Gm25095-201'
),
'ENSMUST00000104692' => array(
'start' => '188519353',
'end' => '188519443',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm24557-201'
),
'ENSMUST00000122601' => array(
'start' => '188760476',
'end' => '188760579',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm25269-201'
),
'ENSMUST00000160380' => array(
'start' => '187125138',
'end' => '187127852',
'transcript_biotype' => 'antisense',
'transcript_name' => '1700007P06Rik-001'
),
'ENSMUST00000160330' => array(
'start' => '187073011',
'end' => '187073335',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm15508-001'
),
'ENSMUST00000162615' => array(
'start' => '187120869',
'end' => '187124365',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'Gm15509-001'
),
'ENSMUST00000180869' => array(
'start' => '186749396',
'end' => '186752921',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'A430105J06Rik-201'
),
'ENSMUST00000180973' => array(
'start' => '186960508',
'end' => '186961513',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm3809-001'
),
'ENSMUST00000189481' => array(
'start' => '186705695',
'end' => '186707033',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP24-276N20.2-001'
),
'ENSDART00000009104' => array(
'start' => '29856986',
'end' => '29961297',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'esrrga-001'
),
'ENSDART00000126966' => array(
'start' => '29853913',
'end' => '29961100',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'esrrga-201'
),
'ENSDART00000086201' => array(
'start' => '29435964',
'end' => '29830749',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ush2a-001'
),
'ENSDART00000076596' => array(
'start' => '30264368',
'end' => '30333425',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'spata17-001'
),
'ENSDART00000153795' => array(
'start' => '30264516',
'end' => '30295845',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'spata17-002'
),
'ENSDART00000121157' => array(
'start' => '29696315',
'end' => '29696431',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.1348-201'
),
'ENSDART00000156827' => array(
'start' => '30199209',
'end' => '30264412',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'si:dkey-27l15.1-001'
),
'ENSDART00000157205' => array(
'start' => '30235546',
'end' => '30263639',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'si:dkey-27l15.1-002'
),
'ENSDART00000154352' => array(
'start' => '29782461',
'end' => '29787853',
'transcript_biotype' => 'antisense',
'transcript_name' => 'si:ch211-214o2.3-001'
),
'ENSDART00000154906' => array(
'start' => '30366564',
'end' => '30425815',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'si:ch211-139l2.1-001'
),
'ENSDART00000153865' => array(
'start' => '29781195',
'end' => '29782323',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'si:ch211-214o2.2-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007JY_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007JY_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007JY_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007JY_0001' => array(
'genes_in_region' => array(
'ENSG00000042781' => array(
[maximum depth reached]
),
'ENSG00000067533' => array(
[maximum depth reached]
),
'ENSG00000092969' => array(
[maximum depth reached]
),
'ENSG00000092978' => array(
[maximum depth reached]
),
'ENSG00000162814' => array(
[maximum depth reached]
),
'ENSG00000196482' => array(
[maximum depth reached]
),
'ENSG00000223375' => array(
[maximum depth reached]
),
'ENSG00000228247' => array(
[maximum depth reached]
),
'ENSG00000229016' => array(
[maximum depth reached]
),
'ENSG00000231814' => array(
[maximum depth reached]
),
'ENSG00000232100' => array(
[maximum depth reached]
),
'ENSG00000232480' => array(
[maximum depth reached]
),
'ENSG00000234070' => array(
[maximum depth reached]
),
'ENSG00000236292' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Brain',
(int) 14 => 'Muscle',
(int) 15 => 'Placenta',
(int) 16 => 'Adipose',
(int) 17 => 'Adrenal',
(int) 18 => 'Bladder',
(int) 19 => 'Brain',
(int) 20 => 'Breast',
(int) 21 => 'Colon',
(int) 22 => 'Heart',
(int) 23 => 'Kidney',
(int) 24 => 'Liver',
(int) 25 => 'Lung',
(int) 26 => 'Ovary',
(int) 27 => 'Placenta',
(int) 28 => 'Testis',
(int) 29 => 'Adipose',
(int) 30 => 'Adrenal',
(int) 31 => 'Bladder',
(int) 32 => 'Brain',
(int) 33 => 'Breast',
(int) 34 => 'Colon',
(int) 35 => 'Heart',
(int) 36 => 'Kidney',
(int) 37 => 'Liver',
(int) 38 => 'Lung',
(int) 39 => 'Muscle',
(int) 40 => 'Ovary',
(int) 41 => 'Placenta',
(int) 42 => 'Testis',
(int) 43 => 'Lung',
(int) 44 => 'Ovary',
(int) 45 => 'Placenta',
(int) 46 => 'Testis',
(int) 47 => 'Adipose',
(int) 48 => 'Lung',
(int) 49 => 'Ovary',
(int) 50 => 'Testis',
(int) 51 => 'Adrenal',
(int) 52 => 'Bladder',
(int) 53 => 'Brain',
(int) 54 => 'Breast',
(int) 55 => 'Colon',
(int) 56 => 'Heart',
(int) 57 => 'Kidney',
(int) 58 => 'Liver',
(int) 59 => 'Lung',
(int) 60 => 'Muscle',
(int) 61 => 'Ovary',
(int) 62 => 'Placenta',
(int) 63 => 'Testis',
(int) 64 => 'Adipose',
(int) 65 => 'Adrenal',
(int) 66 => 'Bladder',
(int) 67 => 'Colon',
(int) 68 => 'Kidney',
(int) 69 => 'Ovary',
(int) 70 => 'Placenta',
(int) 71 => 'Testis',
(int) 72 => 'Adipose',
(int) 73 => 'Adrenal',
(int) 74 => 'Bladder',
(int) 75 => 'Brain',
(int) 76 => 'Breast',
(int) 77 => 'Colon',
(int) 78 => 'Heart',
(int) 79 => 'Kidney',
(int) 80 => 'Liver',
(int) 81 => 'Lung',
(int) 82 => 'Muscle',
(int) 83 => 'Ovary',
(int) 84 => 'Placenta',
(int) 85 => 'Testis',
(int) 86 => 'Adipose',
(int) 87 => 'Adrenal',
(int) 88 => 'Bladder',
(int) 89 => 'Brain',
(int) 90 => 'Breast',
(int) 91 => 'Colon',
(int) 92 => 'Heart',
(int) 93 => 'Kidney',
(int) 94 => 'Liver',
(int) 95 => 'Lung',
(int) 96 => 'Muscle',
(int) 97 => 'Ovary',
(int) 98 => 'Placenta',
(int) 99 => 'Testis',
(int) 100 => 'Adipose',
(int) 101 => 'Adrenal',
(int) 102 => 'Bladder',
(int) 103 => 'Brain',
(int) 104 => 'Breast',
(int) 105 => 'Colon',
(int) 106 => 'Heart',
(int) 107 => 'Kidney',
(int) 108 => 'Liver',
(int) 109 => 'Lung',
(int) 110 => 'Muscle',
(int) 111 => 'Ovary',
(int) 112 => 'Placenta',
(int) 113 => 'Testis',
(int) 114 => 'Brain',
(int) 115 => 'Breast',
(int) 116 => 'Colon',
(int) 117 => 'Heart',
(int) 118 => 'Liver',
(int) 119 => 'Lung',
(int) 120 => 'Muscle',
(int) 121 => 'Ovary',
(int) 122 => 'Testis',
(int) 123 => 'Adipose',
(int) 124 => 'Breast',
(int) 125 => 'Heart',
(int) 126 => 'Kidney',
(int) 127 => 'Lung',
(int) 128 => 'Ovary',
(int) 129 => 'Placenta',
(int) 130 => 'Testis',
(int) 131 => 'Adipose',
(int) 132 => 'Adrenal',
(int) 133 => 'Heart',
(int) 134 => 'Muscle',
(int) 135 => 'Adipose',
(int) 136 => 'Adrenal',
(int) 137 => 'Bladder',
(int) 138 => 'Breast',
(int) 139 => 'Colon',
(int) 140 => 'Liver',
(int) 141 => 'Lung',
(int) 142 => 'Ovary',
(int) 143 => 'Placenta',
(int) 144 => 'Testis',
(int) 145 => 'Brain',
(int) 146 => 'Breast',
(int) 147 => 'Colon',
(int) 148 => 'Muscle',
(int) 149 => 'Kidney',
(int) 150 => 'Breast',
(int) 151 => 'Testis',
(int) 152 => 'Adrenal',
(int) 153 => 'Brain',
(int) 154 => 'Breast',
(int) 155 => 'Colon',
(int) 156 => 'Heart',
(int) 157 => 'Ovary',
(int) 158 => 'Testis',
(int) 159 => 'Brain',
(int) 160 => 'Breast',
(int) 161 => 'Heart',
(int) 162 => 'Liver',
(int) 163 => 'Muscle',
(int) 164 => 'Ovary',
(int) 165 => 'Placenta',
(int) 166 => 'Adipose',
(int) 167 => 'Adrenal',
(int) 168 => 'Bladder',
(int) 169 => 'Breast',
(int) 170 => 'Ovary',
(int) 171 => 'Colon',
(int) 172 => 'Heart',
(int) 173 => 'Muscle',
(int) 174 => 'Adipose',
(int) 175 => 'Testis',
(int) 176 => 'Breast',
(int) 177 => 'Breast',
(int) 178 => 'Muscle',
(int) 179 => 'Kidney',
(int) 180 => 'Ovary',
(int) 181 => 'Testis',
(int) 182 => 'Adrenal',
(int) 183 => 'Kidney',
(int) 184 => 'Adipose',
(int) 185 => 'Adrenal',
(int) 186 => 'Brain',
(int) 187 => 'Breast',
(int) 188 => 'Colon',
(int) 189 => 'Heart',
(int) 190 => 'Kidney',
(int) 191 => 'Liver',
(int) 192 => 'Lung',
(int) 193 => 'Muscle',
(int) 194 => 'Ovary',
(int) 195 => 'Testis',
(int) 196 => 'Adrenal',
(int) 197 => 'Heart',
(int) 198 => 'Brain',
(int) 199 => 'Adipose',
(int) 200 => 'Adrenal',
(int) 201 => 'Brain',
(int) 202 => 'Breast',
(int) 203 => 'Colon',
(int) 204 => 'Heart',
(int) 205 => 'Kidney',
(int) 206 => 'Liver',
(int) 207 => 'Lung',
(int) 208 => 'Muscle',
(int) 209 => 'Ovary',
(int) 210 => 'Testis',
(int) 211 => 'Breast',
(int) 212 => 'Colon',
(int) 213 => 'Heart',
(int) 214 => 'Muscle',
(int) 215 => 'Ovary',
(int) 216 => 'Testis',
(int) 217 => 'Testis',
(int) 218 => 'Placenta',
(int) 219 => 'Testis'
)
),
'CIL_0007JY_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000001305' => array(
[maximum depth reached]
),
'ENSMUSG00000026609' => array(
[maximum depth reached]
),
'ENSMUSG00000026610' => array(
[maximum depth reached]
),
'ENSMUSG00000026611' => array(
[maximum depth reached]
),
'ENSMUSG00000039224' => array(
[maximum depth reached]
),
'ENSMUSG00000039239' => array(
[maximum depth reached]
),
'ENSMUSG00000089730' => array(
[maximum depth reached]
),
'ENSMUSG00000089831' => array(
[maximum depth reached]
),
'ENSMUSG00000089947' => array(
[maximum depth reached]
),
'ENSMUSG00000097784' => array(
[maximum depth reached]
),
'ENSMUSG00000097935' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adipose',
(int) 15 => 'Adrenal',
(int) 16 => 'Bladder',
(int) 17 => 'Brain',
(int) 18 => 'Breast',
(int) 19 => 'Colon',
(int) 20 => 'Heart',
(int) 21 => 'Kidney',
(int) 22 => 'Liver',
(int) 23 => 'Lung',
(int) 24 => 'Ovary',
(int) 25 => 'Testis',
(int) 26 => 'Adrenal',
(int) 27 => 'Brain',
(int) 28 => 'Breast',
(int) 29 => 'Kidney',
(int) 30 => 'Liver',
(int) 31 => 'Lung',
(int) 32 => 'Ovary',
(int) 33 => 'Placenta',
(int) 34 => 'Adipose',
(int) 35 => 'Adrenal',
(int) 36 => 'Heart',
(int) 37 => 'Ovary',
(int) 38 => 'Bladder',
(int) 39 => 'Brain',
(int) 40 => 'Liver',
(int) 41 => 'Placenta',
(int) 42 => 'Heart',
(int) 43 => 'Liver',
(int) 44 => 'Ovary',
(int) 45 => 'Adrenal',
(int) 46 => 'Heart',
(int) 47 => 'Ovary',
(int) 48 => 'Adipose',
(int) 49 => 'Adrenal',
(int) 50 => 'Bladder',
(int) 51 => 'Brain',
(int) 52 => 'Heart',
(int) 53 => 'Kidney',
(int) 54 => 'Liver',
(int) 55 => 'Lung',
(int) 56 => 'Ovary',
(int) 57 => 'Placenta',
(int) 58 => 'Adrenal',
(int) 59 => 'Breast',
(int) 60 => 'Ovary',
(int) 61 => 'Adipose',
(int) 62 => 'Adrenal',
(int) 63 => 'Bladder',
(int) 64 => 'Brain',
(int) 65 => 'Breast',
(int) 66 => 'Colon',
(int) 67 => 'Heart',
(int) 68 => 'Kidney',
(int) 69 => 'Liver',
(int) 70 => 'Lung',
(int) 71 => 'Muscle',
(int) 72 => 'Ovary',
(int) 73 => 'Placenta',
(int) 74 => 'Testis',
(int) 75 => 'Adipose',
(int) 76 => 'Adrenal',
(int) 77 => 'Breast',
(int) 78 => 'Adipose',
(int) 79 => 'Breast',
(int) 80 => 'Colon',
(int) 81 => 'Liver',
(int) 82 => 'Lung',
(int) 83 => 'Muscle',
(int) 84 => 'Ovary',
(int) 85 => 'Bladder',
(int) 86 => 'Brain',
(int) 87 => 'Muscle',
(int) 88 => 'Testis',
(int) 89 => 'Adipose',
(int) 90 => 'Kidney',
(int) 91 => 'Liver',
(int) 92 => 'Ovary',
(int) 93 => 'Placenta',
(int) 94 => 'Testis',
(int) 95 => 'Adipose',
(int) 96 => 'Adrenal',
(int) 97 => 'Bladder',
(int) 98 => 'Brain',
(int) 99 => 'Breast',
(int) 100 => 'Colon',
(int) 101 => 'Heart',
(int) 102 => 'Kidney',
(int) 103 => 'Liver',
(int) 104 => 'Lung',
(int) 105 => 'Muscle',
(int) 106 => 'Ovary',
(int) 107 => 'Placenta',
(int) 108 => 'Testis',
(int) 109 => 'Colon',
(int) 110 => 'Liver',
(int) 111 => 'Adipose',
(int) 112 => 'Adrenal',
(int) 113 => 'Bladder',
(int) 114 => 'Breast',
(int) 115 => 'Colon',
(int) 116 => 'Heart',
(int) 117 => 'Kidney',
(int) 118 => 'Liver',
(int) 119 => 'Lung',
(int) 120 => 'Muscle',
(int) 121 => 'Ovary',
(int) 122 => 'Testis',
(int) 123 => 'Testis',
(int) 124 => 'Adipose',
(int) 125 => 'Adrenal',
(int) 126 => 'Bladder',
(int) 127 => 'Brain',
(int) 128 => 'Breast',
(int) 129 => 'Colon',
(int) 130 => 'Heart',
(int) 131 => 'Kidney',
(int) 132 => 'Liver',
(int) 133 => 'Lung',
(int) 134 => 'Muscle',
(int) 135 => 'Ovary',
(int) 136 => 'Placenta',
(int) 137 => 'Testis',
(int) 138 => 'Adrenal',
(int) 139 => 'Breast',
(int) 140 => 'Colon',
(int) 141 => 'Heart',
(int) 142 => 'Kidney',
(int) 143 => 'Liver',
(int) 144 => 'Lung',
(int) 145 => 'Muscle',
(int) 146 => 'Ovary',
(int) 147 => 'Placenta',
(int) 148 => 'Bladder',
(int) 149 => 'Brain',
(int) 150 => 'Heart',
(int) 151 => 'Kidney',
(int) 152 => 'Liver',
(int) 153 => 'Lung',
(int) 154 => 'Muscle',
(int) 155 => 'Ovary',
(int) 156 => 'Placenta',
(int) 157 => 'Adrenal',
(int) 158 => 'Muscle',
(int) 159 => 'Placenta',
(int) 160 => 'Testis',
(int) 161 => 'Testis',
(int) 162 => 'Adipose',
(int) 163 => 'Adrenal',
(int) 164 => 'Bladder',
(int) 165 => 'Brain',
(int) 166 => 'Breast',
(int) 167 => 'Colon',
(int) 168 => 'Heart',
(int) 169 => 'Kidney',
(int) 170 => 'Liver',
(int) 171 => 'Lung',
(int) 172 => 'Muscle',
(int) 173 => 'Ovary',
(int) 174 => 'Bladder',
(int) 175 => 'Brain',
(int) 176 => 'Breast',
(int) 177 => 'Heart',
(int) 178 => 'Kidney',
(int) 179 => 'Liver',
(int) 180 => 'Ovary',
(int) 181 => 'Placenta',
(int) 182 => 'Testis',
(int) 183 => 'Adipose',
(int) 184 => 'Adrenal',
(int) 185 => 'Bladder',
(int) 186 => 'Brain',
(int) 187 => 'Breast',
(int) 188 => 'Colon',
(int) 189 => 'Heart',
(int) 190 => 'Kidney',
(int) 191 => 'Liver',
(int) 192 => 'Lung',
(int) 193 => 'Muscle',
(int) 194 => 'Ovary',
(int) 195 => 'Placenta',
(int) 196 => 'Testis',
(int) 197 => 'Adipose',
(int) 198 => 'Brain',
(int) 199 => 'Breast',
(int) 200 => 'Heart',
(int) 201 => 'Kidney',
(int) 202 => 'Liver',
(int) 203 => 'Lung',
(int) 204 => 'Ovary',
(int) 205 => 'Testis',
(int) 206 => 'Brain',
(int) 207 => 'Placenta',
(int) 208 => 'Testis',
(int) 209 => 'Brain',
(int) 210 => 'Heart',
(int) 211 => 'Kidney',
(int) 212 => 'Liver',
(int) 213 => 'Lung',
(int) 214 => 'Testis',
(int) 215 => 'Adipose',
(int) 216 => 'Adrenal',
(int) 217 => 'Bladder',
(int) 218 => 'Brain',
(int) 219 => 'Breast',
(int) 220 => 'Colon',
(int) 221 => 'Heart',
(int) 222 => 'Kidney',
(int) 223 => 'Liver',
(int) 224 => 'Lung',
(int) 225 => 'Muscle',
(int) 226 => 'Ovary',
(int) 227 => 'Placenta',
(int) 228 => 'Testis',
(int) 229 => 'Adipose',
(int) 230 => 'Adrenal',
(int) 231 => 'Bladder',
(int) 232 => 'Brain',
(int) 233 => 'Breast',
(int) 234 => 'Colon',
(int) 235 => 'Heart',
(int) 236 => 'Kidney',
(int) 237 => 'Liver',
(int) 238 => 'Lung',
(int) 239 => 'Muscle',
(int) 240 => 'Ovary',
(int) 241 => 'Placenta',
(int) 242 => 'Testis'
)
),
'CIL_0007JY_0004' => array(
'genes_in_region' => array(
'ENSDARG00000004861' => array(
[maximum depth reached]
),
'ENSDARG00000029482' => array(
[maximum depth reached]
),
'ENSDARG00000054414' => array(
[maximum depth reached]
),
'ENSDARG00000097115' => array(
[maximum depth reached]
),
'ENSDARG00000097219' => array(
[maximum depth reached]
),
'ENSDARG00000097668' => array(
[maximum depth reached]
),
'ENSDARG00000097817' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Liver',
(int) 1 => 'Brain',
(int) 2 => 'Heart',
(int) 3 => 'Kidney',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Muscle',
(int) 10 => 'Brain',
(int) 11 => 'Kidney',
(int) 12 => 'Brain',
(int) 13 => 'Liver',
(int) 14 => 'Brain',
(int) 15 => 'Heart',
(int) 16 => 'Kidney',
(int) 17 => 'Muscle',
(int) 18 => 'Brain',
(int) 19 => 'Liver'
)
)
)
$gene_desc_arr = array(
'ENSG00000042781' => 'Usher syndrome 2A (autosomal recessive, mild)',
'ENSG00000067533' => 'ribosomal RNA processing 15 homolog (S. cerevisiae)',
'ENSG00000092969' => 'transforming growth factor, beta 2',
'ENSG00000092978' => 'G patch domain containing 2',
'ENSG00000162814' => 'spermatogenesis associated 17',
'ENSG00000196482' => 'estrogen-related receptor gamma',
'ENSG00000201493' => 'RNA, U1 small nuclear 141, pseudogene',
'ENSG00000223375' => null,
'ENSG00000226013' => 'mitochondrial ribosomal protein S18B pseudogene 1',
'ENSG00000228247' => 'ubiquitin B pseudogene 2',
'ENSG00000229016' => null,
'ENSG00000229242' => null,
'ENSG00000230714' => null,
'ENSG00000231814' => 'long intergenic non-protein coding RNA 210',
'ENSG00000232100' => null,
'ENSG00000232480' => 'TGFB2 antisense RNA 1 (head to head)',
'ENSG00000233620' => null,
'ENSG00000234070' => 'SPATA17 antisense RNA 1',
'ENSG00000236292' => null,
'ENSMUSG00000001305' => 'ribosomal RNA processing 15 homolog (S. cerevisiae)',
'ENSMUSG00000026609' => 'Usher syndrome 2A (autosomal recessive, mild)',
'ENSMUSG00000026610' => 'estrogen-related receptor gamma',
'ENSMUSG00000026611' => 'spermatogenesis associated 17',
'ENSMUSG00000039210' => 'G patch domain containing 2',
'ENSMUSG00000039224' => 'DNA segment, Chr 1, Pasteur Institute 1',
'ENSMUSG00000039239' => 'transforming growth factor, beta 2',
'ENSMUSG00000077235' => 'predicted gene, 25095',
'ENSMUSG00000077884' => 'predicted gene, 24557',
'ENSMUSG00000084550' => 'predicted gene, 25269',
'ENSMUSG00000089730' => 'RIKEN cDNA 1700007P06 gene',
'ENSMUSG00000089831' => 'predicted gene 15508',
'ENSMUSG00000089947' => 'predicted gene 15509',
'ENSMUSG00000097784' => 'RIKEN cDNA A430105J06 gene',
'ENSMUSG00000097935' => 'predicted gene 3809',
'ENSMUSG00000100393' => 'predicted gene 29491',
'ENSDARG00000004861' => 'estrogen-related receptor gamma a',
'ENSDARG00000029482' => 'Usher syndrome 2A (autosomal recessive, mild)',
'ENSDARG00000054414' => 'spermatogenesis associated 17',
'ENSDARG00000085757' => '5S ribosomal RNA',
'ENSDARG00000097115' => 'si:dkey-27l15.1',
'ENSDARG00000097219' => 'si:ch211-214o2.3',
'ENSDARG00000097668' => 'si:ch211-139l2.1',
'ENSDARG00000097817' => 'si:ch211-214o2.2'
)
$gene_name_arr = array(
'ENSG00000042781' => 'USH2A',
'ENSG00000067533' => 'RRP15',
'ENSG00000092969' => 'TGFB2',
'ENSG00000092978' => 'GPATCH2',
'ENSG00000162814' => 'SPATA17',
'ENSG00000196482' => 'ESRRG',
'ENSG00000201493' => 'RNU1-141P',
'ENSG00000223375' => 'RP11-224O19.5',
'ENSG00000226013' => 'MRPS18BP1',
'ENSG00000228247' => 'UBBP2',
'ENSG00000229016' => 'RP11-224O19.4',
'ENSG00000229242' => 'RP5-1111A8.3',
'ENSG00000230714' => 'RP11-152L7.1',
'ENSG00000231814' => 'LINC00210',
'ENSG00000232100' => 'RP11-152L7.2',
'ENSG00000232480' => 'TGFB2-AS1',
'ENSG00000233620' => 'RP11-22M7.2',
'ENSG00000234070' => 'SPATA17-AS1',
'ENSG00000236292' => 'RP5-1099E6.3',
'ENSMUSG00000001305' => 'Rrp15',
'ENSMUSG00000026609' => 'Ush2a',
'ENSMUSG00000026610' => 'Esrrg',
'ENSMUSG00000026611' => 'Spata17',
'ENSMUSG00000039210' => 'Gpatch2',
'ENSMUSG00000039224' => 'D1Pas1',
'ENSMUSG00000039239' => 'Tgfb2',
'ENSMUSG00000077235' => 'Gm25095',
'ENSMUSG00000077884' => 'Gm24557',
'ENSMUSG00000084550' => 'Gm25269',
'ENSMUSG00000089730' => '1700007P06Rik',
'ENSMUSG00000089831' => 'Gm15508',
'ENSMUSG00000089947' => 'Gm15509',
'ENSMUSG00000097784' => 'A430105J06Rik',
'ENSMUSG00000097935' => 'Gm3809',
'ENSMUSG00000100393' => 'RP24-276N20.2',
'ENSDARG00000004861' => 'esrrga',
'ENSDARG00000029482' => 'ush2a',
'ENSDARG00000054414' => 'spata17',
'ENSDARG00000085757' => '5S_rRNA',
'ENSDARG00000097115' => 'si:dkey-27l15.1',
'ENSDARG00000097219' => 'si:ch211-214o2.3',
'ENSDARG00000097668' => 'si:ch211-139l2.1',
'ENSDARG00000097817' => 'si:ch211-214o2.2'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JY_0001',
'tax_id' => '9606',
'chromosome' => '1',
'seq_start' => '215651193',
'seq_end' => '218349979',
'region_length' => '2698786',
'region_type' => 'UCNEbase',
'el_id' => 'ESRRG'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JY_0002',
'tax_id' => '10090',
'chromosome' => '1',
'seq_start' => '186701249',
'seq_end' => '188943182',
'region_length' => '2241933',
'region_type' => 'UCNEbase',
'el_id' => 'ESRRG'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JY_0003',
'tax_id' => '7955',
'chromosome' => '16',
'seq_start' => '3401465',
'seq_end' => '3401656',
'region_length' => '191',
'region_type' => 'UCNEbase',
'el_id' => 'ESRRG'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JY_0004',
'tax_id' => '7955',
'chromosome' => '17',
'seq_start' => '29456098',
'seq_end' => '30423974',
'region_length' => '967876',
'region_type' => 'UCNEbase',
'el_id' => 'ESRRG'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 31 => 'Adrenal',
(int) 65 => 'Bladder',
(int) 90 => 'Brain',
(int) 129 => 'Breast',
(int) 166 => 'Colon',
(int) 195 => 'Heart',
(int) 234 => 'Kidney',
(int) 270 => 'Liver',
(int) 308 => 'Lung',
(int) 339 => 'Muscle',
(int) 371 => 'Ovary',
(int) 413 => 'Placenta',
(int) 443 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 112
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000307340' => array(
'start' => '215622894',
'end' => '216423396',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USH2A-002'
),
'ENST00000366942' => array(
'start' => '216173946',
'end' => '216423396',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USH2A-001'
),
'ENST00000366943' => array(
'start' => '215622894',
'end' => '216423396',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USH2A-201'
),
'ENST00000463147' => array(
'start' => '216083380',
'end' => '216085108',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USH2A-004'
),
'ENST00000481786' => array(
'start' => '216083370',
'end' => '216089139',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USH2A-003'
),
'ENST00000366932' => array(
'start' => '218285287',
'end' => '218337983',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RRP15-001'
),
'ENST00000491428' => array(
'start' => '218285342',
'end' => '218302671',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'RRP15-002'
),
'ENST00000366929' => array(
'start' => '218346235',
'end' => '218444619',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TGFB2-002'
),
'ENST00000366930' => array(
'start' => '218346235',
'end' => '218444619',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TGFB2-001'
),
'ENST00000479322' => array(
'start' => '218434126',
'end' => '218442141',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TGFB2-004'
),
'ENST00000488793' => array(
'start' => '218347038',
'end' => '218434312',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TGFB2-003'
),
'ENST00000366934' => array(
'start' => '217608184',
'end' => '217631082',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'GPATCH2-002'
),
'ENST00000366935' => array(
'start' => '217426992',
'end' => '217631082',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'GPATCH2-001'
),
'ENST00000470014' => array(
'start' => '217492501',
'end' => '217610400',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'GPATCH2-005'
),
'ENST00000485274' => array(
'start' => '217498180',
'end' => '217610379',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'GPATCH2-003'
),
'ENST00000489246' => array(
'start' => '217491506',
'end' => '217498764',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'GPATCH2-004'
),
'ENST00000366933' => array(
'start' => '217631324',
'end' => '217871696',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SPATA17-001'
),
'ENST00000470448' => array(
'start' => '217631324',
'end' => '217774424',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SPATA17-002'
),
'ENST00000471021' => array(
'start' => '217801718',
'end' => '217867588',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SPATA17-004'
),
'ENST00000491809' => array(
'start' => '217862775',
'end' => '217867133',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SPATA17-005'
),
'ENST00000492747' => array(
'start' => '217737844',
'end' => '217801768',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SPATA17-003'
),
'ENST00000359162' => array(
'start' => '216503254',
'end' => '217089605',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ESRRG-004'
),
'ENST00000360012' => array(
'start' => '216503254',
'end' => '216805367',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ESRRG-005'
),
'ENST00000361395' => array(
'start' => '216503254',
'end' => '216939673',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ESRRG-002'
),
'ENST00000361525' => array(
'start' => '216503246',
'end' => '217089645',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ESRRG-201'
),
'ENST00000366937' => array(
'start' => '216503254',
'end' => '216723453',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ESRRG-006'
),
'ENST00000366938' => array(
'start' => '216503254',
'end' => '216939673',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ESRRG-007'
),
'ENST00000366940' => array(
'start' => '216503251',
'end' => '217137755',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ESRRG-003'
),
'ENST00000391890' => array(
'start' => '216503246',
'end' => '216723472',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ESRRG-202'
),
'ENST00000408911' => array(
'start' => '216503254',
'end' => '216723453',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ESRRG-001'
),
'ENST00000459825' => array(
'start' => '216865117',
'end' => '217089613',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ESRRG-020'
),
'ENST00000459955' => array(
'start' => '216677312',
'end' => '216723452',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ESRRG-016'
),
'ENST00000463665' => array(
'start' => '216505454',
'end' => '217076931',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ESRRG-011'
),
'ENST00000469486' => array(
'start' => '216677201',
'end' => '216723416',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ESRRG-017'
),
'ENST00000469913' => array(
'start' => '216707420',
'end' => '216723429',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ESRRG-018'
),
'ENST00000471371' => array(
'start' => '216862230',
'end' => '217089636',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ESRRG-009'
),
'ENST00000475275' => array(
'start' => '216519152',
'end' => '216723332',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ESRRG-008'
),
'ENST00000477799' => array(
'start' => '216855042',
'end' => '217078360',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ESRRG-015'
),
'ENST00000481543' => array(
'start' => '216677328',
'end' => '216723425',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ESRRG-019'
),
'ENST00000487276' => array(
'start' => '216505490',
'end' => '216939670',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ESRRG-013'
),
'ENST00000488947' => array(
'start' => '216865061',
'end' => '217090547',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ESRRG-014'
),
'ENST00000493603' => array(
'start' => '216503254',
'end' => '217137754',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ESRRG-010'
),
'ENST00000493748' => array(
'start' => '216506788',
'end' => '217076889',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ESRRG-012'
),
'ENST00000586199' => array(
'start' => '216567988',
'end' => '217078288',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ESRRG-023'
),
'ENST00000616180' => array(
'start' => '216503246',
'end' => '216715253',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ESRRG-203'
),
'ENST00000364623' => array(
'start' => '218129795',
'end' => '218129952',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU1-141P-201'
),
'ENST00000444678' => array(
'start' => '218338541',
'end' => '218338756',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-224O19.5-001'
),
'ENST00000414228' => array(
'start' => '216201635',
'end' => '216201826',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'MRPS18BP1-001'
),
'ENST00000376781' => array(
'start' => '217850403',
'end' => '217850633',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'UBBP2-001'
),
'ENST00000434965' => array(
'start' => '218301262',
'end' => '218301972',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-224O19.4-001'
),
'ENST00000414995' => array(
'start' => '215886582',
'end' => '215901464',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP5-1111A8.3-001'
),
'ENST00000420347' => array(
'start' => '218031835',
'end' => '218033660',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-152L7.1-001'
),
'ENST00000431637' => array(
'start' => '217892900',
'end' => '217920804',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00210-001'
),
'ENST00000456026' => array(
'start' => '218043505',
'end' => '218059140',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-152L7.2-001'
),
'ENST00000414452' => array(
'start' => '218344196',
'end' => '218345678',
'transcript_biotype' => 'antisense',
'transcript_name' => 'TGFB2-AS1-001'
),
'ENST00000430890' => array(
'start' => '216072729',
'end' => '216086905',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-22M7.2-003'
),
'ENST00000442606' => array(
'start' => '216079073',
'end' => '216086905',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-22M7.2-002'
),
'ENST00000445619' => array(
'start' => '216072806',
'end' => '216086905',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-22M7.2-004'
),
'ENST00000446411' => array(
'start' => '216072465',
'end' => '216086917',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-22M7.2-001'
),
'ENST00000415765' => array(
'start' => '217781198',
'end' => '217785120',
'transcript_biotype' => 'antisense',
'transcript_name' => 'SPATA17-AS1-001'
),
'ENST00000420867' => array(
'start' => '216194051',
'end' => '216204366',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP5-1099E6.3-001'
),
'ENSMUST00000001339' => array(
'start' => '186720978',
'end' => '186749358',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Rrp15-001'
),
'ENSMUST00000162336' => array(
'start' => '186721092',
'end' => '186749325',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Rrp15-002'
),
'ENSMUST00000060479' => array(
'start' => '188263034',
'end' => '188965041',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ush2a-001'
),
'ENSMUST00000124358' => array(
'start' => '188262035',
'end' => '188452401',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Ush2a-002'
),
'ENSMUST00000127077' => array(
'start' => '188953744',
'end' => '188964965',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ush2a-005'
),
'ENSMUST00000142159' => array(
'start' => '188537807',
'end' => '188678687',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Ush2a-004'
),
'ENSMUST00000142189' => array(
'start' => '188262023',
'end' => '188357520',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Ush2a-003'
),
'ENSMUST00000027906' => array(
'start' => '187997827',
'end' => '188214885',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Esrrg-001'
),
'ENSMUST00000110938' => array(
'start' => '187997868',
'end' => '188214884',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Esrrg-002'
),
'ENSMUST00000110939' => array(
'start' => '187609029',
'end' => '188214386',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Esrrg-003'
),
'ENSMUST00000127489' => array(
'start' => '187608791',
'end' => '188043502',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Esrrg-004'
),
'ENSMUST00000152927' => array(
'start' => '187609696',
'end' => '187793742',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Esrrg-005'
),
'ENSMUST00000027908' => array(
'start' => '187048407',
'end' => '187215446',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Spata17-201'
),
'ENSMUST00000110945' => array(
'start' => '187135293',
'end' => '187215421',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Spata17-003'
),
'ENSMUST00000183469' => array(
'start' => '187188861',
'end' => '187215446',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Spata17-002'
),
'ENSMUST00000183656' => array(
'start' => '187135300',
'end' => '187143084',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Spata17-006'
),
'ENSMUST00000183819' => array(
'start' => '187044648',
'end' => '187215465',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Spata17-001'
),
'ENSMUST00000183931' => array(
'start' => '187117263',
'end' => '187215437',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Spata17-007'
),
'ENSMUST00000183996' => array(
'start' => '187112484',
'end' => '187142904',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Spata17-005'
),
'ENSMUST00000184543' => array(
'start' => '187135293',
'end' => '187143097',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Spata17-004'
),
'ENSMUST00000044812' => array(
'start' => '187215544',
'end' => '187234339',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gpatch2-007'
),
'ENSMUST00000065573' => array(
'start' => '187215511',
'end' => '187351427',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gpatch2-201'
),
'ENSMUST00000097443' => array(
'start' => '187215508',
'end' => '187235831',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gpatch2-002'
),
'ENSMUST00000110943' => array(
'start' => '187215522',
'end' => '187351704',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gpatch2-001'
),
'ENSMUST00000159748' => array(
'start' => '187215546',
'end' => '187233901',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Gpatch2-008'
),
'ENSMUST00000160471' => array(
'start' => '187215743',
'end' => '187350723',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gpatch2-006'
),
'ENSMUST00000160481' => array(
'start' => '187215511',
'end' => '187349640',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Gpatch2-003'
),
'ENSMUST00000160570' => array(
'start' => '187226180',
'end' => '187351427',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gpatch2-004'
),
'ENSMUST00000161260' => array(
'start' => '187215538',
'end' => '187305043',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Gpatch2-005'
),
'ENSMUST00000045108' => array(
'start' => '186967416',
'end' => '186970627',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'D1Pas1-001'
),
'ENSMUST00000045288' => array(
'start' => '186623186',
'end' => '186705992',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tgfb2-201'
),
'ENSMUST00000104047' => array(
'start' => '188622923',
'end' => '188623053',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'Gm25095-201'
),
'ENSMUST00000104692' => array(
'start' => '188519353',
'end' => '188519443',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm24557-201'
),
'ENSMUST00000122601' => array(
'start' => '188760476',
'end' => '188760579',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm25269-201'
),
'ENSMUST00000160380' => array(
'start' => '187125138',
'end' => '187127852',
'transcript_biotype' => 'antisense',
'transcript_name' => '1700007P06Rik-001'
),
'ENSMUST00000160330' => array(
'start' => '187073011',
'end' => '187073335',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm15508-001'
),
'ENSMUST00000162615' => array(
'start' => '187120869',
'end' => '187124365',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'Gm15509-001'
),
'ENSMUST00000180869' => array(
'start' => '186749396',
'end' => '186752921',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'A430105J06Rik-201'
),
'ENSMUST00000180973' => array(
'start' => '186960508',
'end' => '186961513',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm3809-001'
),
'ENSMUST00000189481' => array(
'start' => '186705695',
'end' => '186707033',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP24-276N20.2-001'
),
'ENSDART00000009104' => array(
'start' => '29856986',
'end' => '29961297',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'esrrga-001'
),
'ENSDART00000126966' => array(
'start' => '29853913',
'end' => '29961100',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'esrrga-201'
),
'ENSDART00000086201' => array(
'start' => '29435964',
'end' => '29830749',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ush2a-001'
),
'ENSDART00000076596' => array(
'start' => '30264368',
'end' => '30333425',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'spata17-001'
),
'ENSDART00000153795' => array(
'start' => '30264516',
'end' => '30295845',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'spata17-002'
),
'ENSDART00000121157' => array(
'start' => '29696315',
'end' => '29696431',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.1348-201'
),
'ENSDART00000156827' => array(
'start' => '30199209',
'end' => '30264412',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'si:dkey-27l15.1-001'
),
'ENSDART00000157205' => array(
'start' => '30235546',
'end' => '30263639',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'si:dkey-27l15.1-002'
),
'ENSDART00000154352' => array(
'start' => '29782461',
'end' => '29787853',
'transcript_biotype' => 'antisense',
'transcript_name' => 'si:ch211-214o2.3-001'
),
'ENSDART00000154906' => array(
'start' => '30366564',
'end' => '30425815',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'si:ch211-139l2.1-001'
),
'ENSDART00000153865' => array(
'start' => '29781195',
'end' => '29782323',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'si:ch211-214o2.2-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007JY_0001' => array(
'genes_in_region' => array(
'ENSG00000042781' => array(
[maximum depth reached]
),
'ENSG00000067533' => array(
[maximum depth reached]
),
'ENSG00000092969' => array(
[maximum depth reached]
),
'ENSG00000092978' => array(
[maximum depth reached]
),
'ENSG00000162814' => array(
[maximum depth reached]
),
'ENSG00000196482' => array(
[maximum depth reached]
),
'ENSG00000223375' => array(
[maximum depth reached]
),
'ENSG00000228247' => array(
[maximum depth reached]
),
'ENSG00000229016' => array(
[maximum depth reached]
),
'ENSG00000231814' => array(
[maximum depth reached]
),
'ENSG00000232100' => array(
[maximum depth reached]
),
'ENSG00000232480' => array(
[maximum depth reached]
),
'ENSG00000234070' => array(
[maximum depth reached]
),
'ENSG00000236292' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Brain',
(int) 14 => 'Muscle',
(int) 15 => 'Placenta',
(int) 16 => 'Adipose',
(int) 17 => 'Adrenal',
(int) 18 => 'Bladder',
(int) 19 => 'Brain',
(int) 20 => 'Breast',
(int) 21 => 'Colon',
(int) 22 => 'Heart',
(int) 23 => 'Kidney',
(int) 24 => 'Liver',
(int) 25 => 'Lung',
(int) 26 => 'Ovary',
(int) 27 => 'Placenta',
(int) 28 => 'Testis',
(int) 29 => 'Adipose',
(int) 30 => 'Adrenal',
(int) 31 => 'Bladder',
(int) 32 => 'Brain',
(int) 33 => 'Breast',
(int) 34 => 'Colon',
(int) 35 => 'Heart',
(int) 36 => 'Kidney',
(int) 37 => 'Liver',
(int) 38 => 'Lung',
(int) 39 => 'Muscle',
(int) 40 => 'Ovary',
(int) 41 => 'Placenta',
(int) 42 => 'Testis',
(int) 43 => 'Lung',
(int) 44 => 'Ovary',
(int) 45 => 'Placenta',
(int) 46 => 'Testis',
(int) 47 => 'Adipose',
(int) 48 => 'Lung',
(int) 49 => 'Ovary',
(int) 50 => 'Testis',
(int) 51 => 'Adrenal',
(int) 52 => 'Bladder',
(int) 53 => 'Brain',
(int) 54 => 'Breast',
(int) 55 => 'Colon',
(int) 56 => 'Heart',
(int) 57 => 'Kidney',
(int) 58 => 'Liver',
(int) 59 => 'Lung',
(int) 60 => 'Muscle',
(int) 61 => 'Ovary',
(int) 62 => 'Placenta',
(int) 63 => 'Testis',
(int) 64 => 'Adipose',
(int) 65 => 'Adrenal',
(int) 66 => 'Bladder',
(int) 67 => 'Colon',
(int) 68 => 'Kidney',
(int) 69 => 'Ovary',
(int) 70 => 'Placenta',
(int) 71 => 'Testis',
(int) 72 => 'Adipose',
(int) 73 => 'Adrenal',
(int) 74 => 'Bladder',
(int) 75 => 'Brain',
(int) 76 => 'Breast',
(int) 77 => 'Colon',
(int) 78 => 'Heart',
(int) 79 => 'Kidney',
(int) 80 => 'Liver',
(int) 81 => 'Lung',
(int) 82 => 'Muscle',
(int) 83 => 'Ovary',
(int) 84 => 'Placenta',
(int) 85 => 'Testis',
(int) 86 => 'Adipose',
(int) 87 => 'Adrenal',
(int) 88 => 'Bladder',
(int) 89 => 'Brain',
(int) 90 => 'Breast',
(int) 91 => 'Colon',
(int) 92 => 'Heart',
(int) 93 => 'Kidney',
(int) 94 => 'Liver',
(int) 95 => 'Lung',
(int) 96 => 'Muscle',
(int) 97 => 'Ovary',
(int) 98 => 'Placenta',
(int) 99 => 'Testis',
(int) 100 => 'Adipose',
(int) 101 => 'Adrenal',
(int) 102 => 'Bladder',
(int) 103 => 'Brain',
(int) 104 => 'Breast',
(int) 105 => 'Colon',
(int) 106 => 'Heart',
(int) 107 => 'Kidney',
(int) 108 => 'Liver',
(int) 109 => 'Lung',
(int) 110 => 'Muscle',
(int) 111 => 'Ovary',
(int) 112 => 'Placenta',
(int) 113 => 'Testis',
(int) 114 => 'Brain',
(int) 115 => 'Breast',
(int) 116 => 'Colon',
(int) 117 => 'Heart',
(int) 118 => 'Liver',
(int) 119 => 'Lung',
(int) 120 => 'Muscle',
(int) 121 => 'Ovary',
(int) 122 => 'Testis',
(int) 123 => 'Adipose',
(int) 124 => 'Breast',
(int) 125 => 'Heart',
(int) 126 => 'Kidney',
(int) 127 => 'Lung',
(int) 128 => 'Ovary',
(int) 129 => 'Placenta',
(int) 130 => 'Testis',
(int) 131 => 'Adipose',
(int) 132 => 'Adrenal',
(int) 133 => 'Heart',
(int) 134 => 'Muscle',
(int) 135 => 'Adipose',
(int) 136 => 'Adrenal',
(int) 137 => 'Bladder',
(int) 138 => 'Breast',
(int) 139 => 'Colon',
(int) 140 => 'Liver',
(int) 141 => 'Lung',
(int) 142 => 'Ovary',
(int) 143 => 'Placenta',
(int) 144 => 'Testis',
(int) 145 => 'Brain',
(int) 146 => 'Breast',
(int) 147 => 'Colon',
(int) 148 => 'Muscle',
(int) 149 => 'Kidney',
(int) 150 => 'Breast',
(int) 151 => 'Testis',
(int) 152 => 'Adrenal',
(int) 153 => 'Brain',
(int) 154 => 'Breast',
(int) 155 => 'Colon',
(int) 156 => 'Heart',
(int) 157 => 'Ovary',
(int) 158 => 'Testis',
(int) 159 => 'Brain',
(int) 160 => 'Breast',
(int) 161 => 'Heart',
(int) 162 => 'Liver',
(int) 163 => 'Muscle',
(int) 164 => 'Ovary',
(int) 165 => 'Placenta',
(int) 166 => 'Adipose',
(int) 167 => 'Adrenal',
(int) 168 => 'Bladder',
(int) 169 => 'Breast',
(int) 170 => 'Ovary',
(int) 171 => 'Colon',
(int) 172 => 'Heart',
(int) 173 => 'Muscle',
(int) 174 => 'Adipose',
(int) 175 => 'Testis',
(int) 176 => 'Breast',
(int) 177 => 'Breast',
(int) 178 => 'Muscle',
(int) 179 => 'Kidney',
(int) 180 => 'Ovary',
(int) 181 => 'Testis',
(int) 182 => 'Adrenal',
(int) 183 => 'Kidney',
(int) 184 => 'Adipose',
(int) 185 => 'Adrenal',
(int) 186 => 'Brain',
(int) 187 => 'Breast',
(int) 188 => 'Colon',
(int) 189 => 'Heart',
(int) 190 => 'Kidney',
(int) 191 => 'Liver',
(int) 192 => 'Lung',
(int) 193 => 'Muscle',
(int) 194 => 'Ovary',
(int) 195 => 'Testis',
(int) 196 => 'Adrenal',
(int) 197 => 'Heart',
(int) 198 => 'Brain',
(int) 199 => 'Adipose',
(int) 200 => 'Adrenal',
(int) 201 => 'Brain',
(int) 202 => 'Breast',
(int) 203 => 'Colon',
(int) 204 => 'Heart',
(int) 205 => 'Kidney',
(int) 206 => 'Liver',
(int) 207 => 'Lung',
(int) 208 => 'Muscle',
(int) 209 => 'Ovary',
(int) 210 => 'Testis',
(int) 211 => 'Breast',
(int) 212 => 'Colon',
(int) 213 => 'Heart',
(int) 214 => 'Muscle',
(int) 215 => 'Ovary',
(int) 216 => 'Testis',
(int) 217 => 'Testis',
(int) 218 => 'Placenta',
(int) 219 => 'Testis'
)
),
'CIL_0007JY_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000001305' => array(
[maximum depth reached]
),
'ENSMUSG00000026609' => array(
[maximum depth reached]
),
'ENSMUSG00000026610' => array(
[maximum depth reached]
),
'ENSMUSG00000026611' => array(
[maximum depth reached]
),
'ENSMUSG00000039224' => array(
[maximum depth reached]
),
'ENSMUSG00000039239' => array(
[maximum depth reached]
),
'ENSMUSG00000089730' => array(
[maximum depth reached]
),
'ENSMUSG00000089831' => array(
[maximum depth reached]
),
'ENSMUSG00000089947' => array(
[maximum depth reached]
),
'ENSMUSG00000097784' => array(
[maximum depth reached]
),
'ENSMUSG00000097935' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adipose',
(int) 15 => 'Adrenal',
(int) 16 => 'Bladder',
(int) 17 => 'Brain',
(int) 18 => 'Breast',
(int) 19 => 'Colon',
(int) 20 => 'Heart',
(int) 21 => 'Kidney',
(int) 22 => 'Liver',
(int) 23 => 'Lung',
(int) 24 => 'Ovary',
(int) 25 => 'Testis',
(int) 26 => 'Adrenal',
(int) 27 => 'Brain',
(int) 28 => 'Breast',
(int) 29 => 'Kidney',
(int) 30 => 'Liver',
(int) 31 => 'Lung',
(int) 32 => 'Ovary',
(int) 33 => 'Placenta',
(int) 34 => 'Adipose',
(int) 35 => 'Adrenal',
(int) 36 => 'Heart',
(int) 37 => 'Ovary',
(int) 38 => 'Bladder',
(int) 39 => 'Brain',
(int) 40 => 'Liver',
(int) 41 => 'Placenta',
(int) 42 => 'Heart',
(int) 43 => 'Liver',
(int) 44 => 'Ovary',
(int) 45 => 'Adrenal',
(int) 46 => 'Heart',
(int) 47 => 'Ovary',
(int) 48 => 'Adipose',
(int) 49 => 'Adrenal',
(int) 50 => 'Bladder',
(int) 51 => 'Brain',
(int) 52 => 'Heart',
(int) 53 => 'Kidney',
(int) 54 => 'Liver',
(int) 55 => 'Lung',
(int) 56 => 'Ovary',
(int) 57 => 'Placenta',
(int) 58 => 'Adrenal',
(int) 59 => 'Breast',
(int) 60 => 'Ovary',
(int) 61 => 'Adipose',
(int) 62 => 'Adrenal',
(int) 63 => 'Bladder',
(int) 64 => 'Brain',
(int) 65 => 'Breast',
(int) 66 => 'Colon',
(int) 67 => 'Heart',
(int) 68 => 'Kidney',
(int) 69 => 'Liver',
(int) 70 => 'Lung',
(int) 71 => 'Muscle',
(int) 72 => 'Ovary',
(int) 73 => 'Placenta',
(int) 74 => 'Testis',
(int) 75 => 'Adipose',
(int) 76 => 'Adrenal',
(int) 77 => 'Breast',
(int) 78 => 'Adipose',
(int) 79 => 'Breast',
(int) 80 => 'Colon',
(int) 81 => 'Liver',
(int) 82 => 'Lung',
(int) 83 => 'Muscle',
(int) 84 => 'Ovary',
(int) 85 => 'Bladder',
(int) 86 => 'Brain',
(int) 87 => 'Muscle',
(int) 88 => 'Testis',
(int) 89 => 'Adipose',
(int) 90 => 'Kidney',
(int) 91 => 'Liver',
(int) 92 => 'Ovary',
(int) 93 => 'Placenta',
(int) 94 => 'Testis',
(int) 95 => 'Adipose',
(int) 96 => 'Adrenal',
(int) 97 => 'Bladder',
(int) 98 => 'Brain',
(int) 99 => 'Breast',
(int) 100 => 'Colon',
(int) 101 => 'Heart',
(int) 102 => 'Kidney',
(int) 103 => 'Liver',
(int) 104 => 'Lung',
(int) 105 => 'Muscle',
(int) 106 => 'Ovary',
(int) 107 => 'Placenta',
(int) 108 => 'Testis',
(int) 109 => 'Colon',
(int) 110 => 'Liver',
(int) 111 => 'Adipose',
(int) 112 => 'Adrenal',
(int) 113 => 'Bladder',
(int) 114 => 'Breast',
(int) 115 => 'Colon',
(int) 116 => 'Heart',
(int) 117 => 'Kidney',
(int) 118 => 'Liver',
(int) 119 => 'Lung',
(int) 120 => 'Muscle',
(int) 121 => 'Ovary',
(int) 122 => 'Testis',
(int) 123 => 'Testis',
(int) 124 => 'Adipose',
(int) 125 => 'Adrenal',
(int) 126 => 'Bladder',
(int) 127 => 'Brain',
(int) 128 => 'Breast',
(int) 129 => 'Colon',
(int) 130 => 'Heart',
(int) 131 => 'Kidney',
(int) 132 => 'Liver',
(int) 133 => 'Lung',
(int) 134 => 'Muscle',
(int) 135 => 'Ovary',
(int) 136 => 'Placenta',
(int) 137 => 'Testis',
(int) 138 => 'Adrenal',
(int) 139 => 'Breast',
(int) 140 => 'Colon',
(int) 141 => 'Heart',
(int) 142 => 'Kidney',
(int) 143 => 'Liver',
(int) 144 => 'Lung',
(int) 145 => 'Muscle',
(int) 146 => 'Ovary',
(int) 147 => 'Placenta',
(int) 148 => 'Bladder',
(int) 149 => 'Brain',
(int) 150 => 'Heart',
(int) 151 => 'Kidney',
(int) 152 => 'Liver',
(int) 153 => 'Lung',
(int) 154 => 'Muscle',
(int) 155 => 'Ovary',
(int) 156 => 'Placenta',
(int) 157 => 'Adrenal',
(int) 158 => 'Muscle',
(int) 159 => 'Placenta',
(int) 160 => 'Testis',
(int) 161 => 'Testis',
(int) 162 => 'Adipose',
(int) 163 => 'Adrenal',
(int) 164 => 'Bladder',
(int) 165 => 'Brain',
(int) 166 => 'Breast',
(int) 167 => 'Colon',
(int) 168 => 'Heart',
(int) 169 => 'Kidney',
(int) 170 => 'Liver',
(int) 171 => 'Lung',
(int) 172 => 'Muscle',
(int) 173 => 'Ovary',
(int) 174 => 'Bladder',
(int) 175 => 'Brain',
(int) 176 => 'Breast',
(int) 177 => 'Heart',
(int) 178 => 'Kidney',
(int) 179 => 'Liver',
(int) 180 => 'Ovary',
(int) 181 => 'Placenta',
(int) 182 => 'Testis',
(int) 183 => 'Adipose',
(int) 184 => 'Adrenal',
(int) 185 => 'Bladder',
(int) 186 => 'Brain',
(int) 187 => 'Breast',
(int) 188 => 'Colon',
(int) 189 => 'Heart',
(int) 190 => 'Kidney',
(int) 191 => 'Liver',
(int) 192 => 'Lung',
(int) 193 => 'Muscle',
(int) 194 => 'Ovary',
(int) 195 => 'Placenta',
(int) 196 => 'Testis',
(int) 197 => 'Adipose',
(int) 198 => 'Brain',
(int) 199 => 'Breast',
(int) 200 => 'Heart',
(int) 201 => 'Kidney',
(int) 202 => 'Liver',
(int) 203 => 'Lung',
(int) 204 => 'Ovary',
(int) 205 => 'Testis',
(int) 206 => 'Brain',
(int) 207 => 'Placenta',
(int) 208 => 'Testis',
(int) 209 => 'Brain',
(int) 210 => 'Heart',
(int) 211 => 'Kidney',
(int) 212 => 'Liver',
(int) 213 => 'Lung',
(int) 214 => 'Testis',
(int) 215 => 'Adipose',
(int) 216 => 'Adrenal',
(int) 217 => 'Bladder',
(int) 218 => 'Brain',
(int) 219 => 'Breast',
(int) 220 => 'Colon',
(int) 221 => 'Heart',
(int) 222 => 'Kidney',
(int) 223 => 'Liver',
(int) 224 => 'Lung',
(int) 225 => 'Muscle',
(int) 226 => 'Ovary',
(int) 227 => 'Placenta',
(int) 228 => 'Testis',
(int) 229 => 'Adipose',
(int) 230 => 'Adrenal',
(int) 231 => 'Bladder',
(int) 232 => 'Brain',
(int) 233 => 'Breast',
(int) 234 => 'Colon',
(int) 235 => 'Heart',
(int) 236 => 'Kidney',
(int) 237 => 'Liver',
(int) 238 => 'Lung',
(int) 239 => 'Muscle',
(int) 240 => 'Ovary',
(int) 241 => 'Placenta',
(int) 242 => 'Testis'
)
),
'CIL_0007JY_0004' => array(
'genes_in_region' => array(
'ENSDARG00000004861' => array(
[maximum depth reached]
),
'ENSDARG00000029482' => array(
[maximum depth reached]
),
'ENSDARG00000054414' => array(
[maximum depth reached]
),
'ENSDARG00000097115' => array(
[maximum depth reached]
),
'ENSDARG00000097219' => array(
[maximum depth reached]
),
'ENSDARG00000097668' => array(
[maximum depth reached]
),
'ENSDARG00000097817' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Liver',
(int) 1 => 'Brain',
(int) 2 => 'Heart',
(int) 3 => 'Kidney',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Muscle',
(int) 10 => 'Brain',
(int) 11 => 'Kidney',
(int) 12 => 'Brain',
(int) 13 => 'Liver',
(int) 14 => 'Brain',
(int) 15 => 'Heart',
(int) 16 => 'Kidney',
(int) 17 => 'Muscle',
(int) 18 => 'Brain',
(int) 19 => 'Liver'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JY_0003',
'tax_id' => '7955',
'chromosome' => '16',
'seq_start' => '3401465',
'seq_end' => '3401656',
'region_length' => '191',
'region_type' => 'UCNEbase',
'el_id' => 'ESRRG'
)
)
$gene_el = array(
'ENSMUST00000180973' => array(
'Adipose' => array(
'average_FPKM' => '0.094',
'stddev_FPKM' => '0.03'
),
'Adrenal' => array(
'average_FPKM' => '0.059',
'stddev_FPKM' => '0.01'
),
'Bladder' => array(
'average_FPKM' => '0.225',
'stddev_FPKM' => '0.22'
),
'Brain' => array(
'average_FPKM' => '0.211',
'stddev_FPKM' => '0.04'
),
'Breast' => array(
'average_FPKM' => '0.175',
'stddev_FPKM' => '0.13'
),
'Colon' => array(
'average_FPKM' => '0.077',
'stddev_FPKM' => '0.02'
),
'Heart' => array(
'average_FPKM' => '0.220',
'stddev_FPKM' => '0.03'
),
'Kidney' => array(
'average_FPKM' => '0.111',
'stddev_FPKM' => '0.09'
),
'Liver' => array(
'average_FPKM' => '0.117',
'stddev_FPKM' => '0.12'
),
'Lung' => array(
'average_FPKM' => '0.087',
'stddev_FPKM' => '0.00'
),
'Muscle' => array(
'average_FPKM' => '0.068',
'stddev_FPKM' => '0.03'
),
'Ovary' => array(
'average_FPKM' => '0.259',
'stddev_FPKM' => '0.22'
),
'Placenta' => array(
'average_FPKM' => '0.042',
'stddev_FPKM' => '0.04'
),
'Testis' => array(
'average_FPKM' => '1.061',
'stddev_FPKM' => '0.37'
)
)
)
$gene_key = 'ENSMUSG00000097935'
$is_first = false
$tran_el = array(
'Adipose' => array(
'average_FPKM' => '0.094',
'stddev_FPKM' => '0.03'
),
'Adrenal' => array(
'average_FPKM' => '0.059',
'stddev_FPKM' => '0.01'
),
'Bladder' => array(
'average_FPKM' => '0.225',
'stddev_FPKM' => '0.22'
),
'Brain' => array(
'average_FPKM' => '0.211',
'stddev_FPKM' => '0.04'
),
'Breast' => array(
'average_FPKM' => '0.175',
'stddev_FPKM' => '0.13'
),
'Colon' => array(
'average_FPKM' => '0.077',
'stddev_FPKM' => '0.02'
),
'Heart' => array(
'average_FPKM' => '0.220',
'stddev_FPKM' => '0.03'
),
'Kidney' => array(
'average_FPKM' => '0.111',
'stddev_FPKM' => '0.09'
),
'Liver' => array(
'average_FPKM' => '0.117',
'stddev_FPKM' => '0.12'
),
'Lung' => array(
'average_FPKM' => '0.087',
'stddev_FPKM' => '0.00'
),
'Muscle' => array(
'average_FPKM' => '0.068',
'stddev_FPKM' => '0.03'
),
'Ovary' => array(
'average_FPKM' => '0.259',
'stddev_FPKM' => '0.22'
),
'Placenta' => array(
'average_FPKM' => '0.042',
'stddev_FPKM' => '0.04'
),
'Testis' => array(
'average_FPKM' => '1.061',
'stddev_FPKM' => '0.37'
)
)
$tran_key = 'ENSMUST00000180973'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context
<tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007JY_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007JY_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007JY_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000042781' => 'Usher syndrome 2A (autosomal recessive, mild)',
'ENSG00000067533' => 'ribosomal RNA processing 15 homolog (S. cerevisiae)',
'ENSG00000092969' => 'transforming growth factor, beta 2',
'ENSG00000092978' => 'G patch domain containing 2',
'ENSG00000162814' => 'spermatogenesis associated 17',
'ENSG00000196482' => 'estrogen-related receptor gamma',
'ENSG00000201493' => 'RNA, U1 small nuclear 141, pseudogene',
'ENSG00000223375' => null,
'ENSG00000226013' => 'mitochondrial ribosomal protein S18B pseudogene 1',
'ENSG00000228247' => 'ubiquitin B pseudogene 2',
'ENSG00000229016' => null,
'ENSG00000229242' => null,
'ENSG00000230714' => null,
'ENSG00000231814' => 'long intergenic non-protein coding RNA 210',
'ENSG00000232100' => null,
'ENSG00000232480' => 'TGFB2 antisense RNA 1 (head to head)',
'ENSG00000233620' => null,
'ENSG00000234070' => 'SPATA17 antisense RNA 1',
'ENSG00000236292' => null,
'ENSMUSG00000001305' => 'ribosomal RNA processing 15 homolog (S. cerevisiae)',
'ENSMUSG00000026609' => 'Usher syndrome 2A (autosomal recessive, mild)',
'ENSMUSG00000026610' => 'estrogen-related receptor gamma',
'ENSMUSG00000026611' => 'spermatogenesis associated 17',
'ENSMUSG00000039210' => 'G patch domain containing 2',
'ENSMUSG00000039224' => 'DNA segment, Chr 1, Pasteur Institute 1',
'ENSMUSG00000039239' => 'transforming growth factor, beta 2',
'ENSMUSG00000077235' => 'predicted gene, 25095',
'ENSMUSG00000077884' => 'predicted gene, 24557',
'ENSMUSG00000084550' => 'predicted gene, 25269',
'ENSMUSG00000089730' => 'RIKEN cDNA 1700007P06 gene',
'ENSMUSG00000089831' => 'predicted gene 15508',
'ENSMUSG00000089947' => 'predicted gene 15509',
'ENSMUSG00000097784' => 'RIKEN cDNA A430105J06 gene',
'ENSMUSG00000097935' => 'predicted gene 3809',
'ENSMUSG00000100393' => 'predicted gene 29491',
'ENSDARG00000004861' => 'estrogen-related receptor gamma a',
'ENSDARG00000029482' => 'Usher syndrome 2A (autosomal recessive, mild)',
'ENSDARG00000054414' => 'spermatogenesis associated 17',
'ENSDARG00000085757' => '5S ribosomal RNA',
'ENSDARG00000097115' => 'si:dkey-27l15.1',
'ENSDARG00000097219' => 'si:ch211-214o2.3',
'ENSDARG00000097668' => 'si:ch211-139l2.1',
'ENSDARG00000097817' => 'si:ch211-214o2.2'
),
'gene_name_arr' => array(
'ENSG00000042781' => 'USH2A',
'ENSG00000067533' => 'RRP15',
'ENSG00000092969' => 'TGFB2',
'ENSG00000092978' => 'GPATCH2',
'ENSG00000162814' => 'SPATA17',
'ENSG00000196482' => 'ESRRG',
'ENSG00000201493' => 'RNU1-141P',
'ENSG00000223375' => 'RP11-224O19.5',
'ENSG00000226013' => 'MRPS18BP1',
'ENSG00000228247' => 'UBBP2',
'ENSG00000229016' => 'RP11-224O19.4',
'ENSG00000229242' => 'RP5-1111A8.3',
'ENSG00000230714' => 'RP11-152L7.1',
'ENSG00000231814' => 'LINC00210',
'ENSG00000232100' => 'RP11-152L7.2',
'ENSG00000232480' => 'TGFB2-AS1',
'ENSG00000233620' => 'RP11-22M7.2',
'ENSG00000234070' => 'SPATA17-AS1',
'ENSG00000236292' => 'RP5-1099E6.3',
'ENSMUSG00000001305' => 'Rrp15',
'ENSMUSG00000026609' => 'Ush2a',
'ENSMUSG00000026610' => 'Esrrg',
'ENSMUSG00000026611' => 'Spata17',
'ENSMUSG00000039210' => 'Gpatch2',
'ENSMUSG00000039224' => 'D1Pas1',
'ENSMUSG00000039239' => 'Tgfb2',
'ENSMUSG00000077235' => 'Gm25095',
'ENSMUSG00000077884' => 'Gm24557',
'ENSMUSG00000084550' => 'Gm25269',
'ENSMUSG00000089730' => '1700007P06Rik',
'ENSMUSG00000089831' => 'Gm15508',
'ENSMUSG00000089947' => 'Gm15509',
'ENSMUSG00000097784' => 'A430105J06Rik',
'ENSMUSG00000097935' => 'Gm3809',
'ENSMUSG00000100393' => 'RP24-276N20.2',
'ENSDARG00000004861' => 'esrrga',
'ENSDARG00000029482' => 'ush2a',
'ENSDARG00000054414' => 'spata17',
'ENSDARG00000085757' => '5S_rRNA',
'ENSDARG00000097115' => 'si:dkey-27l15.1',
'ENSDARG00000097219' => 'si:ch211-214o2.3',
'ENSDARG00000097668' => 'si:ch211-139l2.1',
'ENSDARG00000097817' => 'si:ch211-214o2.2'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 31 => 'Adrenal',
(int) 65 => 'Bladder',
(int) 90 => 'Brain',
(int) 129 => 'Breast',
(int) 166 => 'Colon',
(int) 195 => 'Heart',
(int) 234 => 'Kidney',
(int) 270 => 'Liver',
(int) 308 => 'Lung',
(int) 339 => 'Muscle',
(int) 371 => 'Ovary',
(int) 413 => 'Placenta',
(int) 443 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
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'transcript_name' => 'si:ch211-214o2.3-001'
),
'ENSDART00000154906' => array(
'start' => '30366564',
'end' => '30425815',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'si:ch211-139l2.1-001'
),
'ENSDART00000153865' => array(
'start' => '29781195',
'end' => '29782323',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'si:ch211-214o2.2-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007JY_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007JY_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007JY_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007JY_0001' => array(
'genes_in_region' => array(
'ENSG00000042781' => array(
[maximum depth reached]
),
'ENSG00000067533' => array(
[maximum depth reached]
),
'ENSG00000092969' => array(
[maximum depth reached]
),
'ENSG00000092978' => array(
[maximum depth reached]
),
'ENSG00000162814' => array(
[maximum depth reached]
),
'ENSG00000196482' => array(
[maximum depth reached]
),
'ENSG00000223375' => array(
[maximum depth reached]
),
'ENSG00000228247' => array(
[maximum depth reached]
),
'ENSG00000229016' => array(
[maximum depth reached]
),
'ENSG00000231814' => array(
[maximum depth reached]
),
'ENSG00000232100' => array(
[maximum depth reached]
),
'ENSG00000232480' => array(
[maximum depth reached]
),
'ENSG00000234070' => array(
[maximum depth reached]
),
'ENSG00000236292' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Brain',
(int) 14 => 'Muscle',
(int) 15 => 'Placenta',
(int) 16 => 'Adipose',
(int) 17 => 'Adrenal',
(int) 18 => 'Bladder',
(int) 19 => 'Brain',
(int) 20 => 'Breast',
(int) 21 => 'Colon',
(int) 22 => 'Heart',
(int) 23 => 'Kidney',
(int) 24 => 'Liver',
(int) 25 => 'Lung',
(int) 26 => 'Ovary',
(int) 27 => 'Placenta',
(int) 28 => 'Testis',
(int) 29 => 'Adipose',
(int) 30 => 'Adrenal',
(int) 31 => 'Bladder',
(int) 32 => 'Brain',
(int) 33 => 'Breast',
(int) 34 => 'Colon',
(int) 35 => 'Heart',
(int) 36 => 'Kidney',
(int) 37 => 'Liver',
(int) 38 => 'Lung',
(int) 39 => 'Muscle',
(int) 40 => 'Ovary',
(int) 41 => 'Placenta',
(int) 42 => 'Testis',
(int) 43 => 'Lung',
(int) 44 => 'Ovary',
(int) 45 => 'Placenta',
(int) 46 => 'Testis',
(int) 47 => 'Adipose',
(int) 48 => 'Lung',
(int) 49 => 'Ovary',
(int) 50 => 'Testis',
(int) 51 => 'Adrenal',
(int) 52 => 'Bladder',
(int) 53 => 'Brain',
(int) 54 => 'Breast',
(int) 55 => 'Colon',
(int) 56 => 'Heart',
(int) 57 => 'Kidney',
(int) 58 => 'Liver',
(int) 59 => 'Lung',
(int) 60 => 'Muscle',
(int) 61 => 'Ovary',
(int) 62 => 'Placenta',
(int) 63 => 'Testis',
(int) 64 => 'Adipose',
(int) 65 => 'Adrenal',
(int) 66 => 'Bladder',
(int) 67 => 'Colon',
(int) 68 => 'Kidney',
(int) 69 => 'Ovary',
(int) 70 => 'Placenta',
(int) 71 => 'Testis',
(int) 72 => 'Adipose',
(int) 73 => 'Adrenal',
(int) 74 => 'Bladder',
(int) 75 => 'Brain',
(int) 76 => 'Breast',
(int) 77 => 'Colon',
(int) 78 => 'Heart',
(int) 79 => 'Kidney',
(int) 80 => 'Liver',
(int) 81 => 'Lung',
(int) 82 => 'Muscle',
(int) 83 => 'Ovary',
(int) 84 => 'Placenta',
(int) 85 => 'Testis',
(int) 86 => 'Adipose',
(int) 87 => 'Adrenal',
(int) 88 => 'Bladder',
(int) 89 => 'Brain',
(int) 90 => 'Breast',
(int) 91 => 'Colon',
(int) 92 => 'Heart',
(int) 93 => 'Kidney',
(int) 94 => 'Liver',
(int) 95 => 'Lung',
(int) 96 => 'Muscle',
(int) 97 => 'Ovary',
(int) 98 => 'Placenta',
(int) 99 => 'Testis',
(int) 100 => 'Adipose',
(int) 101 => 'Adrenal',
(int) 102 => 'Bladder',
(int) 103 => 'Brain',
(int) 104 => 'Breast',
(int) 105 => 'Colon',
(int) 106 => 'Heart',
(int) 107 => 'Kidney',
(int) 108 => 'Liver',
(int) 109 => 'Lung',
(int) 110 => 'Muscle',
(int) 111 => 'Ovary',
(int) 112 => 'Placenta',
(int) 113 => 'Testis',
(int) 114 => 'Brain',
(int) 115 => 'Breast',
(int) 116 => 'Colon',
(int) 117 => 'Heart',
(int) 118 => 'Liver',
(int) 119 => 'Lung',
(int) 120 => 'Muscle',
(int) 121 => 'Ovary',
(int) 122 => 'Testis',
(int) 123 => 'Adipose',
(int) 124 => 'Breast',
(int) 125 => 'Heart',
(int) 126 => 'Kidney',
(int) 127 => 'Lung',
(int) 128 => 'Ovary',
(int) 129 => 'Placenta',
(int) 130 => 'Testis',
(int) 131 => 'Adipose',
(int) 132 => 'Adrenal',
(int) 133 => 'Heart',
(int) 134 => 'Muscle',
(int) 135 => 'Adipose',
(int) 136 => 'Adrenal',
(int) 137 => 'Bladder',
(int) 138 => 'Breast',
(int) 139 => 'Colon',
(int) 140 => 'Liver',
(int) 141 => 'Lung',
(int) 142 => 'Ovary',
(int) 143 => 'Placenta',
(int) 144 => 'Testis',
(int) 145 => 'Brain',
(int) 146 => 'Breast',
(int) 147 => 'Colon',
(int) 148 => 'Muscle',
(int) 149 => 'Kidney',
(int) 150 => 'Breast',
(int) 151 => 'Testis',
(int) 152 => 'Adrenal',
(int) 153 => 'Brain',
(int) 154 => 'Breast',
(int) 155 => 'Colon',
(int) 156 => 'Heart',
(int) 157 => 'Ovary',
(int) 158 => 'Testis',
(int) 159 => 'Brain',
(int) 160 => 'Breast',
(int) 161 => 'Heart',
(int) 162 => 'Liver',
(int) 163 => 'Muscle',
(int) 164 => 'Ovary',
(int) 165 => 'Placenta',
(int) 166 => 'Adipose',
(int) 167 => 'Adrenal',
(int) 168 => 'Bladder',
(int) 169 => 'Breast',
(int) 170 => 'Ovary',
(int) 171 => 'Colon',
(int) 172 => 'Heart',
(int) 173 => 'Muscle',
(int) 174 => 'Adipose',
(int) 175 => 'Testis',
(int) 176 => 'Breast',
(int) 177 => 'Breast',
(int) 178 => 'Muscle',
(int) 179 => 'Kidney',
(int) 180 => 'Ovary',
(int) 181 => 'Testis',
(int) 182 => 'Adrenal',
(int) 183 => 'Kidney',
(int) 184 => 'Adipose',
(int) 185 => 'Adrenal',
(int) 186 => 'Brain',
(int) 187 => 'Breast',
(int) 188 => 'Colon',
(int) 189 => 'Heart',
(int) 190 => 'Kidney',
(int) 191 => 'Liver',
(int) 192 => 'Lung',
(int) 193 => 'Muscle',
(int) 194 => 'Ovary',
(int) 195 => 'Testis',
(int) 196 => 'Adrenal',
(int) 197 => 'Heart',
(int) 198 => 'Brain',
(int) 199 => 'Adipose',
(int) 200 => 'Adrenal',
(int) 201 => 'Brain',
(int) 202 => 'Breast',
(int) 203 => 'Colon',
(int) 204 => 'Heart',
(int) 205 => 'Kidney',
(int) 206 => 'Liver',
(int) 207 => 'Lung',
(int) 208 => 'Muscle',
(int) 209 => 'Ovary',
(int) 210 => 'Testis',
(int) 211 => 'Breast',
(int) 212 => 'Colon',
(int) 213 => 'Heart',
(int) 214 => 'Muscle',
(int) 215 => 'Ovary',
(int) 216 => 'Testis',
(int) 217 => 'Testis',
(int) 218 => 'Placenta',
(int) 219 => 'Testis'
)
),
'CIL_0007JY_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000001305' => array(
[maximum depth reached]
),
'ENSMUSG00000026609' => array(
[maximum depth reached]
),
'ENSMUSG00000026610' => array(
[maximum depth reached]
),
'ENSMUSG00000026611' => array(
[maximum depth reached]
),
'ENSMUSG00000039224' => array(
[maximum depth reached]
),
'ENSMUSG00000039239' => array(
[maximum depth reached]
),
'ENSMUSG00000089730' => array(
[maximum depth reached]
),
'ENSMUSG00000089831' => array(
[maximum depth reached]
),
'ENSMUSG00000089947' => array(
[maximum depth reached]
),
'ENSMUSG00000097784' => array(
[maximum depth reached]
),
'ENSMUSG00000097935' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adipose',
(int) 15 => 'Adrenal',
(int) 16 => 'Bladder',
(int) 17 => 'Brain',
(int) 18 => 'Breast',
(int) 19 => 'Colon',
(int) 20 => 'Heart',
(int) 21 => 'Kidney',
(int) 22 => 'Liver',
(int) 23 => 'Lung',
(int) 24 => 'Ovary',
(int) 25 => 'Testis',
(int) 26 => 'Adrenal',
(int) 27 => 'Brain',
(int) 28 => 'Breast',
(int) 29 => 'Kidney',
(int) 30 => 'Liver',
(int) 31 => 'Lung',
(int) 32 => 'Ovary',
(int) 33 => 'Placenta',
(int) 34 => 'Adipose',
(int) 35 => 'Adrenal',
(int) 36 => 'Heart',
(int) 37 => 'Ovary',
(int) 38 => 'Bladder',
(int) 39 => 'Brain',
(int) 40 => 'Liver',
(int) 41 => 'Placenta',
(int) 42 => 'Heart',
(int) 43 => 'Liver',
(int) 44 => 'Ovary',
(int) 45 => 'Adrenal',
(int) 46 => 'Heart',
(int) 47 => 'Ovary',
(int) 48 => 'Adipose',
(int) 49 => 'Adrenal',
(int) 50 => 'Bladder',
(int) 51 => 'Brain',
(int) 52 => 'Heart',
(int) 53 => 'Kidney',
(int) 54 => 'Liver',
(int) 55 => 'Lung',
(int) 56 => 'Ovary',
(int) 57 => 'Placenta',
(int) 58 => 'Adrenal',
(int) 59 => 'Breast',
(int) 60 => 'Ovary',
(int) 61 => 'Adipose',
(int) 62 => 'Adrenal',
(int) 63 => 'Bladder',
(int) 64 => 'Brain',
(int) 65 => 'Breast',
(int) 66 => 'Colon',
(int) 67 => 'Heart',
(int) 68 => 'Kidney',
(int) 69 => 'Liver',
(int) 70 => 'Lung',
(int) 71 => 'Muscle',
(int) 72 => 'Ovary',
(int) 73 => 'Placenta',
(int) 74 => 'Testis',
(int) 75 => 'Adipose',
(int) 76 => 'Adrenal',
(int) 77 => 'Breast',
(int) 78 => 'Adipose',
(int) 79 => 'Breast',
(int) 80 => 'Colon',
(int) 81 => 'Liver',
(int) 82 => 'Lung',
(int) 83 => 'Muscle',
(int) 84 => 'Ovary',
(int) 85 => 'Bladder',
(int) 86 => 'Brain',
(int) 87 => 'Muscle',
(int) 88 => 'Testis',
(int) 89 => 'Adipose',
(int) 90 => 'Kidney',
(int) 91 => 'Liver',
(int) 92 => 'Ovary',
(int) 93 => 'Placenta',
(int) 94 => 'Testis',
(int) 95 => 'Adipose',
(int) 96 => 'Adrenal',
(int) 97 => 'Bladder',
(int) 98 => 'Brain',
(int) 99 => 'Breast',
(int) 100 => 'Colon',
(int) 101 => 'Heart',
(int) 102 => 'Kidney',
(int) 103 => 'Liver',
(int) 104 => 'Lung',
(int) 105 => 'Muscle',
(int) 106 => 'Ovary',
(int) 107 => 'Placenta',
(int) 108 => 'Testis',
(int) 109 => 'Colon',
(int) 110 => 'Liver',
(int) 111 => 'Adipose',
(int) 112 => 'Adrenal',
(int) 113 => 'Bladder',
(int) 114 => 'Breast',
(int) 115 => 'Colon',
(int) 116 => 'Heart',
(int) 117 => 'Kidney',
(int) 118 => 'Liver',
(int) 119 => 'Lung',
(int) 120 => 'Muscle',
(int) 121 => 'Ovary',
(int) 122 => 'Testis',
(int) 123 => 'Testis',
(int) 124 => 'Adipose',
(int) 125 => 'Adrenal',
(int) 126 => 'Bladder',
(int) 127 => 'Brain',
(int) 128 => 'Breast',
(int) 129 => 'Colon',
(int) 130 => 'Heart',
(int) 131 => 'Kidney',
(int) 132 => 'Liver',
(int) 133 => 'Lung',
(int) 134 => 'Muscle',
(int) 135 => 'Ovary',
(int) 136 => 'Placenta',
(int) 137 => 'Testis',
(int) 138 => 'Adrenal',
(int) 139 => 'Breast',
(int) 140 => 'Colon',
(int) 141 => 'Heart',
(int) 142 => 'Kidney',
(int) 143 => 'Liver',
(int) 144 => 'Lung',
(int) 145 => 'Muscle',
(int) 146 => 'Ovary',
(int) 147 => 'Placenta',
(int) 148 => 'Bladder',
(int) 149 => 'Brain',
(int) 150 => 'Heart',
(int) 151 => 'Kidney',
(int) 152 => 'Liver',
(int) 153 => 'Lung',
(int) 154 => 'Muscle',
(int) 155 => 'Ovary',
(int) 156 => 'Placenta',
(int) 157 => 'Adrenal',
(int) 158 => 'Muscle',
(int) 159 => 'Placenta',
(int) 160 => 'Testis',
(int) 161 => 'Testis',
(int) 162 => 'Adipose',
(int) 163 => 'Adrenal',
(int) 164 => 'Bladder',
(int) 165 => 'Brain',
(int) 166 => 'Breast',
(int) 167 => 'Colon',
(int) 168 => 'Heart',
(int) 169 => 'Kidney',
(int) 170 => 'Liver',
(int) 171 => 'Lung',
(int) 172 => 'Muscle',
(int) 173 => 'Ovary',
(int) 174 => 'Bladder',
(int) 175 => 'Brain',
(int) 176 => 'Breast',
(int) 177 => 'Heart',
(int) 178 => 'Kidney',
(int) 179 => 'Liver',
(int) 180 => 'Ovary',
(int) 181 => 'Placenta',
(int) 182 => 'Testis',
(int) 183 => 'Adipose',
(int) 184 => 'Adrenal',
(int) 185 => 'Bladder',
(int) 186 => 'Brain',
(int) 187 => 'Breast',
(int) 188 => 'Colon',
(int) 189 => 'Heart',
(int) 190 => 'Kidney',
(int) 191 => 'Liver',
(int) 192 => 'Lung',
(int) 193 => 'Muscle',
(int) 194 => 'Ovary',
(int) 195 => 'Placenta',
(int) 196 => 'Testis',
(int) 197 => 'Adipose',
(int) 198 => 'Brain',
(int) 199 => 'Breast',
(int) 200 => 'Heart',
(int) 201 => 'Kidney',
(int) 202 => 'Liver',
(int) 203 => 'Lung',
(int) 204 => 'Ovary',
(int) 205 => 'Testis',
(int) 206 => 'Brain',
(int) 207 => 'Placenta',
(int) 208 => 'Testis',
(int) 209 => 'Brain',
(int) 210 => 'Heart',
(int) 211 => 'Kidney',
(int) 212 => 'Liver',
(int) 213 => 'Lung',
(int) 214 => 'Testis',
(int) 215 => 'Adipose',
(int) 216 => 'Adrenal',
(int) 217 => 'Bladder',
(int) 218 => 'Brain',
(int) 219 => 'Breast',
(int) 220 => 'Colon',
(int) 221 => 'Heart',
(int) 222 => 'Kidney',
(int) 223 => 'Liver',
(int) 224 => 'Lung',
(int) 225 => 'Muscle',
(int) 226 => 'Ovary',
(int) 227 => 'Placenta',
(int) 228 => 'Testis',
(int) 229 => 'Adipose',
(int) 230 => 'Adrenal',
(int) 231 => 'Bladder',
(int) 232 => 'Brain',
(int) 233 => 'Breast',
(int) 234 => 'Colon',
(int) 235 => 'Heart',
(int) 236 => 'Kidney',
(int) 237 => 'Liver',
(int) 238 => 'Lung',
(int) 239 => 'Muscle',
(int) 240 => 'Ovary',
(int) 241 => 'Placenta',
(int) 242 => 'Testis'
)
),
'CIL_0007JY_0004' => array(
'genes_in_region' => array(
'ENSDARG00000004861' => array(
[maximum depth reached]
),
'ENSDARG00000029482' => array(
[maximum depth reached]
),
'ENSDARG00000054414' => array(
[maximum depth reached]
),
'ENSDARG00000097115' => array(
[maximum depth reached]
),
'ENSDARG00000097219' => array(
[maximum depth reached]
),
'ENSDARG00000097668' => array(
[maximum depth reached]
),
'ENSDARG00000097817' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Liver',
(int) 1 => 'Brain',
(int) 2 => 'Heart',
(int) 3 => 'Kidney',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Muscle',
(int) 10 => 'Brain',
(int) 11 => 'Kidney',
(int) 12 => 'Brain',
(int) 13 => 'Liver',
(int) 14 => 'Brain',
(int) 15 => 'Heart',
(int) 16 => 'Kidney',
(int) 17 => 'Muscle',
(int) 18 => 'Brain',
(int) 19 => 'Liver'
)
)
)
$gene_desc_arr = array(
'ENSG00000042781' => 'Usher syndrome 2A (autosomal recessive, mild)',
'ENSG00000067533' => 'ribosomal RNA processing 15 homolog (S. cerevisiae)',
'ENSG00000092969' => 'transforming growth factor, beta 2',
'ENSG00000092978' => 'G patch domain containing 2',
'ENSG00000162814' => 'spermatogenesis associated 17',
'ENSG00000196482' => 'estrogen-related receptor gamma',
'ENSG00000201493' => 'RNA, U1 small nuclear 141, pseudogene',
'ENSG00000223375' => null,
'ENSG00000226013' => 'mitochondrial ribosomal protein S18B pseudogene 1',
'ENSG00000228247' => 'ubiquitin B pseudogene 2',
'ENSG00000229016' => null,
'ENSG00000229242' => null,
'ENSG00000230714' => null,
'ENSG00000231814' => 'long intergenic non-protein coding RNA 210',
'ENSG00000232100' => null,
'ENSG00000232480' => 'TGFB2 antisense RNA 1 (head to head)',
'ENSG00000233620' => null,
'ENSG00000234070' => 'SPATA17 antisense RNA 1',
'ENSG00000236292' => null,
'ENSMUSG00000001305' => 'ribosomal RNA processing 15 homolog (S. cerevisiae)',
'ENSMUSG00000026609' => 'Usher syndrome 2A (autosomal recessive, mild)',
'ENSMUSG00000026610' => 'estrogen-related receptor gamma',
'ENSMUSG00000026611' => 'spermatogenesis associated 17',
'ENSMUSG00000039210' => 'G patch domain containing 2',
'ENSMUSG00000039224' => 'DNA segment, Chr 1, Pasteur Institute 1',
'ENSMUSG00000039239' => 'transforming growth factor, beta 2',
'ENSMUSG00000077235' => 'predicted gene, 25095',
'ENSMUSG00000077884' => 'predicted gene, 24557',
'ENSMUSG00000084550' => 'predicted gene, 25269',
'ENSMUSG00000089730' => 'RIKEN cDNA 1700007P06 gene',
'ENSMUSG00000089831' => 'predicted gene 15508',
'ENSMUSG00000089947' => 'predicted gene 15509',
'ENSMUSG00000097784' => 'RIKEN cDNA A430105J06 gene',
'ENSMUSG00000097935' => 'predicted gene 3809',
'ENSMUSG00000100393' => 'predicted gene 29491',
'ENSDARG00000004861' => 'estrogen-related receptor gamma a',
'ENSDARG00000029482' => 'Usher syndrome 2A (autosomal recessive, mild)',
'ENSDARG00000054414' => 'spermatogenesis associated 17',
'ENSDARG00000085757' => '5S ribosomal RNA',
'ENSDARG00000097115' => 'si:dkey-27l15.1',
'ENSDARG00000097219' => 'si:ch211-214o2.3',
'ENSDARG00000097668' => 'si:ch211-139l2.1',
'ENSDARG00000097817' => 'si:ch211-214o2.2'
)
$gene_name_arr = array(
'ENSG00000042781' => 'USH2A',
'ENSG00000067533' => 'RRP15',
'ENSG00000092969' => 'TGFB2',
'ENSG00000092978' => 'GPATCH2',
'ENSG00000162814' => 'SPATA17',
'ENSG00000196482' => 'ESRRG',
'ENSG00000201493' => 'RNU1-141P',
'ENSG00000223375' => 'RP11-224O19.5',
'ENSG00000226013' => 'MRPS18BP1',
'ENSG00000228247' => 'UBBP2',
'ENSG00000229016' => 'RP11-224O19.4',
'ENSG00000229242' => 'RP5-1111A8.3',
'ENSG00000230714' => 'RP11-152L7.1',
'ENSG00000231814' => 'LINC00210',
'ENSG00000232100' => 'RP11-152L7.2',
'ENSG00000232480' => 'TGFB2-AS1',
'ENSG00000233620' => 'RP11-22M7.2',
'ENSG00000234070' => 'SPATA17-AS1',
'ENSG00000236292' => 'RP5-1099E6.3',
'ENSMUSG00000001305' => 'Rrp15',
'ENSMUSG00000026609' => 'Ush2a',
'ENSMUSG00000026610' => 'Esrrg',
'ENSMUSG00000026611' => 'Spata17',
'ENSMUSG00000039210' => 'Gpatch2',
'ENSMUSG00000039224' => 'D1Pas1',
'ENSMUSG00000039239' => 'Tgfb2',
'ENSMUSG00000077235' => 'Gm25095',
'ENSMUSG00000077884' => 'Gm24557',
'ENSMUSG00000084550' => 'Gm25269',
'ENSMUSG00000089730' => '1700007P06Rik',
'ENSMUSG00000089831' => 'Gm15508',
'ENSMUSG00000089947' => 'Gm15509',
'ENSMUSG00000097784' => 'A430105J06Rik',
'ENSMUSG00000097935' => 'Gm3809',
'ENSMUSG00000100393' => 'RP24-276N20.2',
'ENSDARG00000004861' => 'esrrga',
'ENSDARG00000029482' => 'ush2a',
'ENSDARG00000054414' => 'spata17',
'ENSDARG00000085757' => '5S_rRNA',
'ENSDARG00000097115' => 'si:dkey-27l15.1',
'ENSDARG00000097219' => 'si:ch211-214o2.3',
'ENSDARG00000097668' => 'si:ch211-139l2.1',
'ENSDARG00000097817' => 'si:ch211-214o2.2'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JY_0001',
'tax_id' => '9606',
'chromosome' => '1',
'seq_start' => '215651193',
'seq_end' => '218349979',
'region_length' => '2698786',
'region_type' => 'UCNEbase',
'el_id' => 'ESRRG'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JY_0002',
'tax_id' => '10090',
'chromosome' => '1',
'seq_start' => '186701249',
'seq_end' => '188943182',
'region_length' => '2241933',
'region_type' => 'UCNEbase',
'el_id' => 'ESRRG'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JY_0003',
'tax_id' => '7955',
'chromosome' => '16',
'seq_start' => '3401465',
'seq_end' => '3401656',
'region_length' => '191',
'region_type' => 'UCNEbase',
'el_id' => 'ESRRG'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JY_0004',
'tax_id' => '7955',
'chromosome' => '17',
'seq_start' => '29456098',
'seq_end' => '30423974',
'region_length' => '967876',
'region_type' => 'UCNEbase',
'el_id' => 'ESRRG'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 31 => 'Adrenal',
(int) 65 => 'Bladder',
(int) 90 => 'Brain',
(int) 129 => 'Breast',
(int) 166 => 'Colon',
(int) 195 => 'Heart',
(int) 234 => 'Kidney',
(int) 270 => 'Liver',
(int) 308 => 'Lung',
(int) 339 => 'Muscle',
(int) 371 => 'Ovary',
(int) 413 => 'Placenta',
(int) 443 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 112
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000307340' => array(
'start' => '215622894',
'end' => '216423396',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USH2A-002'
),
'ENST00000366942' => array(
'start' => '216173946',
'end' => '216423396',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USH2A-001'
),
'ENST00000366943' => array(
'start' => '215622894',
'end' => '216423396',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USH2A-201'
),
'ENST00000463147' => array(
'start' => '216083380',
'end' => '216085108',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USH2A-004'
),
'ENST00000481786' => array(
'start' => '216083370',
'end' => '216089139',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USH2A-003'
),
'ENST00000366932' => array(
'start' => '218285287',
'end' => '218337983',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RRP15-001'
),
'ENST00000491428' => array(
'start' => '218285342',
'end' => '218302671',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'RRP15-002'
),
'ENST00000366929' => array(
'start' => '218346235',
'end' => '218444619',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TGFB2-002'
),
'ENST00000366930' => array(
'start' => '218346235',
'end' => '218444619',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TGFB2-001'
),
'ENST00000479322' => array(
'start' => '218434126',
'end' => '218442141',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TGFB2-004'
),
'ENST00000488793' => array(
'start' => '218347038',
'end' => '218434312',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TGFB2-003'
),
'ENST00000366934' => array(
'start' => '217608184',
'end' => '217631082',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'GPATCH2-002'
),
'ENST00000366935' => array(
'start' => '217426992',
'end' => '217631082',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'GPATCH2-001'
),
'ENST00000470014' => array(
'start' => '217492501',
'end' => '217610400',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'GPATCH2-005'
),
'ENST00000485274' => array(
'start' => '217498180',
'end' => '217610379',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'GPATCH2-003'
),
'ENST00000489246' => array(
'start' => '217491506',
'end' => '217498764',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'GPATCH2-004'
),
'ENST00000366933' => array(
'start' => '217631324',
'end' => '217871696',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SPATA17-001'
),
'ENST00000470448' => array(
'start' => '217631324',
'end' => '217774424',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SPATA17-002'
),
'ENST00000471021' => array(
'start' => '217801718',
'end' => '217867588',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SPATA17-004'
),
'ENST00000491809' => array(
'start' => '217862775',
'end' => '217867133',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SPATA17-005'
),
'ENST00000492747' => array(
'start' => '217737844',
'end' => '217801768',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SPATA17-003'
),
'ENST00000359162' => array(
'start' => '216503254',
'end' => '217089605',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ESRRG-004'
),
'ENST00000360012' => array(
'start' => '216503254',
'end' => '216805367',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ESRRG-005'
),
'ENST00000361395' => array(
'start' => '216503254',
'end' => '216939673',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ESRRG-002'
),
'ENST00000361525' => array(
'start' => '216503246',
'end' => '217089645',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ESRRG-201'
),
'ENST00000366937' => array(
'start' => '216503254',
'end' => '216723453',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ESRRG-006'
),
'ENST00000366938' => array(
'start' => '216503254',
'end' => '216939673',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ESRRG-007'
),
'ENST00000366940' => array(
'start' => '216503251',
'end' => '217137755',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ESRRG-003'
),
'ENST00000391890' => array(
'start' => '216503246',
'end' => '216723472',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ESRRG-202'
),
'ENST00000408911' => array(
'start' => '216503254',
'end' => '216723453',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ESRRG-001'
),
'ENST00000459825' => array(
'start' => '216865117',
'end' => '217089613',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ESRRG-020'
),
'ENST00000459955' => array(
'start' => '216677312',
'end' => '216723452',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ESRRG-016'
),
'ENST00000463665' => array(
'start' => '216505454',
'end' => '217076931',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ESRRG-011'
),
'ENST00000469486' => array(
'start' => '216677201',
'end' => '216723416',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ESRRG-017'
),
'ENST00000469913' => array(
'start' => '216707420',
'end' => '216723429',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ESRRG-018'
),
'ENST00000471371' => array(
'start' => '216862230',
'end' => '217089636',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ESRRG-009'
),
'ENST00000475275' => array(
'start' => '216519152',
'end' => '216723332',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ESRRG-008'
),
'ENST00000477799' => array(
'start' => '216855042',
'end' => '217078360',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ESRRG-015'
),
'ENST00000481543' => array(
'start' => '216677328',
'end' => '216723425',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ESRRG-019'
),
'ENST00000487276' => array(
'start' => '216505490',
'end' => '216939670',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ESRRG-013'
),
'ENST00000488947' => array(
'start' => '216865061',
'end' => '217090547',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ESRRG-014'
),
'ENST00000493603' => array(
'start' => '216503254',
'end' => '217137754',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ESRRG-010'
),
'ENST00000493748' => array(
'start' => '216506788',
'end' => '217076889',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ESRRG-012'
),
'ENST00000586199' => array(
'start' => '216567988',
'end' => '217078288',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ESRRG-023'
),
'ENST00000616180' => array(
'start' => '216503246',
'end' => '216715253',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ESRRG-203'
),
'ENST00000364623' => array(
'start' => '218129795',
'end' => '218129952',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU1-141P-201'
),
'ENST00000444678' => array(
'start' => '218338541',
'end' => '218338756',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-224O19.5-001'
),
'ENST00000414228' => array(
'start' => '216201635',
'end' => '216201826',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'MRPS18BP1-001'
),
'ENST00000376781' => array(
'start' => '217850403',
'end' => '217850633',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'UBBP2-001'
),
'ENST00000434965' => array(
'start' => '218301262',
'end' => '218301972',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-224O19.4-001'
),
'ENST00000414995' => array(
'start' => '215886582',
'end' => '215901464',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP5-1111A8.3-001'
),
'ENST00000420347' => array(
'start' => '218031835',
'end' => '218033660',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-152L7.1-001'
),
'ENST00000431637' => array(
'start' => '217892900',
'end' => '217920804',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00210-001'
),
'ENST00000456026' => array(
'start' => '218043505',
'end' => '218059140',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-152L7.2-001'
),
'ENST00000414452' => array(
'start' => '218344196',
'end' => '218345678',
'transcript_biotype' => 'antisense',
'transcript_name' => 'TGFB2-AS1-001'
),
'ENST00000430890' => array(
'start' => '216072729',
'end' => '216086905',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-22M7.2-003'
),
'ENST00000442606' => array(
'start' => '216079073',
'end' => '216086905',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-22M7.2-002'
),
'ENST00000445619' => array(
'start' => '216072806',
'end' => '216086905',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-22M7.2-004'
),
'ENST00000446411' => array(
'start' => '216072465',
'end' => '216086917',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-22M7.2-001'
),
'ENST00000415765' => array(
'start' => '217781198',
'end' => '217785120',
'transcript_biotype' => 'antisense',
'transcript_name' => 'SPATA17-AS1-001'
),
'ENST00000420867' => array(
'start' => '216194051',
'end' => '216204366',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP5-1099E6.3-001'
),
'ENSMUST00000001339' => array(
'start' => '186720978',
'end' => '186749358',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Rrp15-001'
),
'ENSMUST00000162336' => array(
'start' => '186721092',
'end' => '186749325',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Rrp15-002'
),
'ENSMUST00000060479' => array(
'start' => '188263034',
'end' => '188965041',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ush2a-001'
),
'ENSMUST00000124358' => array(
'start' => '188262035',
'end' => '188452401',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Ush2a-002'
),
'ENSMUST00000127077' => array(
'start' => '188953744',
'end' => '188964965',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ush2a-005'
),
'ENSMUST00000142159' => array(
'start' => '188537807',
'end' => '188678687',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Ush2a-004'
),
'ENSMUST00000142189' => array(
'start' => '188262023',
'end' => '188357520',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Ush2a-003'
),
'ENSMUST00000027906' => array(
'start' => '187997827',
'end' => '188214885',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Esrrg-001'
),
'ENSMUST00000110938' => array(
'start' => '187997868',
'end' => '188214884',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Esrrg-002'
),
'ENSMUST00000110939' => array(
'start' => '187609029',
'end' => '188214386',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Esrrg-003'
),
'ENSMUST00000127489' => array(
'start' => '187608791',
'end' => '188043502',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Esrrg-004'
),
'ENSMUST00000152927' => array(
'start' => '187609696',
'end' => '187793742',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Esrrg-005'
),
'ENSMUST00000027908' => array(
'start' => '187048407',
'end' => '187215446',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Spata17-201'
),
'ENSMUST00000110945' => array(
'start' => '187135293',
'end' => '187215421',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Spata17-003'
),
'ENSMUST00000183469' => array(
'start' => '187188861',
'end' => '187215446',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Spata17-002'
),
'ENSMUST00000183656' => array(
'start' => '187135300',
'end' => '187143084',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Spata17-006'
),
'ENSMUST00000183819' => array(
'start' => '187044648',
'end' => '187215465',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Spata17-001'
),
'ENSMUST00000183931' => array(
'start' => '187117263',
'end' => '187215437',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Spata17-007'
),
'ENSMUST00000183996' => array(
'start' => '187112484',
'end' => '187142904',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Spata17-005'
),
'ENSMUST00000184543' => array(
'start' => '187135293',
'end' => '187143097',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Spata17-004'
),
'ENSMUST00000044812' => array(
'start' => '187215544',
'end' => '187234339',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gpatch2-007'
),
'ENSMUST00000065573' => array(
'start' => '187215511',
'end' => '187351427',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gpatch2-201'
),
'ENSMUST00000097443' => array(
'start' => '187215508',
'end' => '187235831',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gpatch2-002'
),
'ENSMUST00000110943' => array(
'start' => '187215522',
'end' => '187351704',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gpatch2-001'
),
'ENSMUST00000159748' => array(
'start' => '187215546',
'end' => '187233901',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Gpatch2-008'
),
'ENSMUST00000160471' => array(
'start' => '187215743',
'end' => '187350723',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gpatch2-006'
),
'ENSMUST00000160481' => array(
'start' => '187215511',
'end' => '187349640',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Gpatch2-003'
),
'ENSMUST00000160570' => array(
'start' => '187226180',
'end' => '187351427',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gpatch2-004'
),
'ENSMUST00000161260' => array(
'start' => '187215538',
'end' => '187305043',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Gpatch2-005'
),
'ENSMUST00000045108' => array(
'start' => '186967416',
'end' => '186970627',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'D1Pas1-001'
),
'ENSMUST00000045288' => array(
'start' => '186623186',
'end' => '186705992',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tgfb2-201'
),
'ENSMUST00000104047' => array(
'start' => '188622923',
'end' => '188623053',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'Gm25095-201'
),
'ENSMUST00000104692' => array(
'start' => '188519353',
'end' => '188519443',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm24557-201'
),
'ENSMUST00000122601' => array(
'start' => '188760476',
'end' => '188760579',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm25269-201'
),
'ENSMUST00000160380' => array(
'start' => '187125138',
'end' => '187127852',
'transcript_biotype' => 'antisense',
'transcript_name' => '1700007P06Rik-001'
),
'ENSMUST00000160330' => array(
'start' => '187073011',
'end' => '187073335',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm15508-001'
),
'ENSMUST00000162615' => array(
'start' => '187120869',
'end' => '187124365',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'Gm15509-001'
),
'ENSMUST00000180869' => array(
'start' => '186749396',
'end' => '186752921',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'A430105J06Rik-201'
),
'ENSMUST00000180973' => array(
'start' => '186960508',
'end' => '186961513',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm3809-001'
),
'ENSMUST00000189481' => array(
'start' => '186705695',
'end' => '186707033',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP24-276N20.2-001'
),
'ENSDART00000009104' => array(
'start' => '29856986',
'end' => '29961297',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'esrrga-001'
),
'ENSDART00000126966' => array(
'start' => '29853913',
'end' => '29961100',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'esrrga-201'
),
'ENSDART00000086201' => array(
'start' => '29435964',
'end' => '29830749',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ush2a-001'
),
'ENSDART00000076596' => array(
'start' => '30264368',
'end' => '30333425',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'spata17-001'
),
'ENSDART00000153795' => array(
'start' => '30264516',
'end' => '30295845',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'spata17-002'
),
'ENSDART00000121157' => array(
'start' => '29696315',
'end' => '29696431',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.1348-201'
),
'ENSDART00000156827' => array(
'start' => '30199209',
'end' => '30264412',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'si:dkey-27l15.1-001'
),
'ENSDART00000157205' => array(
'start' => '30235546',
'end' => '30263639',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'si:dkey-27l15.1-002'
),
'ENSDART00000154352' => array(
'start' => '29782461',
'end' => '29787853',
'transcript_biotype' => 'antisense',
'transcript_name' => 'si:ch211-214o2.3-001'
),
'ENSDART00000154906' => array(
'start' => '30366564',
'end' => '30425815',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'si:ch211-139l2.1-001'
),
'ENSDART00000153865' => array(
'start' => '29781195',
'end' => '29782323',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'si:ch211-214o2.2-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007JY_0001' => array(
'genes_in_region' => array(
'ENSG00000042781' => array(
[maximum depth reached]
),
'ENSG00000067533' => array(
[maximum depth reached]
),
'ENSG00000092969' => array(
[maximum depth reached]
),
'ENSG00000092978' => array(
[maximum depth reached]
),
'ENSG00000162814' => array(
[maximum depth reached]
),
'ENSG00000196482' => array(
[maximum depth reached]
),
'ENSG00000223375' => array(
[maximum depth reached]
),
'ENSG00000228247' => array(
[maximum depth reached]
),
'ENSG00000229016' => array(
[maximum depth reached]
),
'ENSG00000231814' => array(
[maximum depth reached]
),
'ENSG00000232100' => array(
[maximum depth reached]
),
'ENSG00000232480' => array(
[maximum depth reached]
),
'ENSG00000234070' => array(
[maximum depth reached]
),
'ENSG00000236292' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Brain',
(int) 14 => 'Muscle',
(int) 15 => 'Placenta',
(int) 16 => 'Adipose',
(int) 17 => 'Adrenal',
(int) 18 => 'Bladder',
(int) 19 => 'Brain',
(int) 20 => 'Breast',
(int) 21 => 'Colon',
(int) 22 => 'Heart',
(int) 23 => 'Kidney',
(int) 24 => 'Liver',
(int) 25 => 'Lung',
(int) 26 => 'Ovary',
(int) 27 => 'Placenta',
(int) 28 => 'Testis',
(int) 29 => 'Adipose',
(int) 30 => 'Adrenal',
(int) 31 => 'Bladder',
(int) 32 => 'Brain',
(int) 33 => 'Breast',
(int) 34 => 'Colon',
(int) 35 => 'Heart',
(int) 36 => 'Kidney',
(int) 37 => 'Liver',
(int) 38 => 'Lung',
(int) 39 => 'Muscle',
(int) 40 => 'Ovary',
(int) 41 => 'Placenta',
(int) 42 => 'Testis',
(int) 43 => 'Lung',
(int) 44 => 'Ovary',
(int) 45 => 'Placenta',
(int) 46 => 'Testis',
(int) 47 => 'Adipose',
(int) 48 => 'Lung',
(int) 49 => 'Ovary',
(int) 50 => 'Testis',
(int) 51 => 'Adrenal',
(int) 52 => 'Bladder',
(int) 53 => 'Brain',
(int) 54 => 'Breast',
(int) 55 => 'Colon',
(int) 56 => 'Heart',
(int) 57 => 'Kidney',
(int) 58 => 'Liver',
(int) 59 => 'Lung',
(int) 60 => 'Muscle',
(int) 61 => 'Ovary',
(int) 62 => 'Placenta',
(int) 63 => 'Testis',
(int) 64 => 'Adipose',
(int) 65 => 'Adrenal',
(int) 66 => 'Bladder',
(int) 67 => 'Colon',
(int) 68 => 'Kidney',
(int) 69 => 'Ovary',
(int) 70 => 'Placenta',
(int) 71 => 'Testis',
(int) 72 => 'Adipose',
(int) 73 => 'Adrenal',
(int) 74 => 'Bladder',
(int) 75 => 'Brain',
(int) 76 => 'Breast',
(int) 77 => 'Colon',
(int) 78 => 'Heart',
(int) 79 => 'Kidney',
(int) 80 => 'Liver',
(int) 81 => 'Lung',
(int) 82 => 'Muscle',
(int) 83 => 'Ovary',
(int) 84 => 'Placenta',
(int) 85 => 'Testis',
(int) 86 => 'Adipose',
(int) 87 => 'Adrenal',
(int) 88 => 'Bladder',
(int) 89 => 'Brain',
(int) 90 => 'Breast',
(int) 91 => 'Colon',
(int) 92 => 'Heart',
(int) 93 => 'Kidney',
(int) 94 => 'Liver',
(int) 95 => 'Lung',
(int) 96 => 'Muscle',
(int) 97 => 'Ovary',
(int) 98 => 'Placenta',
(int) 99 => 'Testis',
(int) 100 => 'Adipose',
(int) 101 => 'Adrenal',
(int) 102 => 'Bladder',
(int) 103 => 'Brain',
(int) 104 => 'Breast',
(int) 105 => 'Colon',
(int) 106 => 'Heart',
(int) 107 => 'Kidney',
(int) 108 => 'Liver',
(int) 109 => 'Lung',
(int) 110 => 'Muscle',
(int) 111 => 'Ovary',
(int) 112 => 'Placenta',
(int) 113 => 'Testis',
(int) 114 => 'Brain',
(int) 115 => 'Breast',
(int) 116 => 'Colon',
(int) 117 => 'Heart',
(int) 118 => 'Liver',
(int) 119 => 'Lung',
(int) 120 => 'Muscle',
(int) 121 => 'Ovary',
(int) 122 => 'Testis',
(int) 123 => 'Adipose',
(int) 124 => 'Breast',
(int) 125 => 'Heart',
(int) 126 => 'Kidney',
(int) 127 => 'Lung',
(int) 128 => 'Ovary',
(int) 129 => 'Placenta',
(int) 130 => 'Testis',
(int) 131 => 'Adipose',
(int) 132 => 'Adrenal',
(int) 133 => 'Heart',
(int) 134 => 'Muscle',
(int) 135 => 'Adipose',
(int) 136 => 'Adrenal',
(int) 137 => 'Bladder',
(int) 138 => 'Breast',
(int) 139 => 'Colon',
(int) 140 => 'Liver',
(int) 141 => 'Lung',
(int) 142 => 'Ovary',
(int) 143 => 'Placenta',
(int) 144 => 'Testis',
(int) 145 => 'Brain',
(int) 146 => 'Breast',
(int) 147 => 'Colon',
(int) 148 => 'Muscle',
(int) 149 => 'Kidney',
(int) 150 => 'Breast',
(int) 151 => 'Testis',
(int) 152 => 'Adrenal',
(int) 153 => 'Brain',
(int) 154 => 'Breast',
(int) 155 => 'Colon',
(int) 156 => 'Heart',
(int) 157 => 'Ovary',
(int) 158 => 'Testis',
(int) 159 => 'Brain',
(int) 160 => 'Breast',
(int) 161 => 'Heart',
(int) 162 => 'Liver',
(int) 163 => 'Muscle',
(int) 164 => 'Ovary',
(int) 165 => 'Placenta',
(int) 166 => 'Adipose',
(int) 167 => 'Adrenal',
(int) 168 => 'Bladder',
(int) 169 => 'Breast',
(int) 170 => 'Ovary',
(int) 171 => 'Colon',
(int) 172 => 'Heart',
(int) 173 => 'Muscle',
(int) 174 => 'Adipose',
(int) 175 => 'Testis',
(int) 176 => 'Breast',
(int) 177 => 'Breast',
(int) 178 => 'Muscle',
(int) 179 => 'Kidney',
(int) 180 => 'Ovary',
(int) 181 => 'Testis',
(int) 182 => 'Adrenal',
(int) 183 => 'Kidney',
(int) 184 => 'Adipose',
(int) 185 => 'Adrenal',
(int) 186 => 'Brain',
(int) 187 => 'Breast',
(int) 188 => 'Colon',
(int) 189 => 'Heart',
(int) 190 => 'Kidney',
(int) 191 => 'Liver',
(int) 192 => 'Lung',
(int) 193 => 'Muscle',
(int) 194 => 'Ovary',
(int) 195 => 'Testis',
(int) 196 => 'Adrenal',
(int) 197 => 'Heart',
(int) 198 => 'Brain',
(int) 199 => 'Adipose',
(int) 200 => 'Adrenal',
(int) 201 => 'Brain',
(int) 202 => 'Breast',
(int) 203 => 'Colon',
(int) 204 => 'Heart',
(int) 205 => 'Kidney',
(int) 206 => 'Liver',
(int) 207 => 'Lung',
(int) 208 => 'Muscle',
(int) 209 => 'Ovary',
(int) 210 => 'Testis',
(int) 211 => 'Breast',
(int) 212 => 'Colon',
(int) 213 => 'Heart',
(int) 214 => 'Muscle',
(int) 215 => 'Ovary',
(int) 216 => 'Testis',
(int) 217 => 'Testis',
(int) 218 => 'Placenta',
(int) 219 => 'Testis'
)
),
'CIL_0007JY_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000001305' => array(
[maximum depth reached]
),
'ENSMUSG00000026609' => array(
[maximum depth reached]
),
'ENSMUSG00000026610' => array(
[maximum depth reached]
),
'ENSMUSG00000026611' => array(
[maximum depth reached]
),
'ENSMUSG00000039224' => array(
[maximum depth reached]
),
'ENSMUSG00000039239' => array(
[maximum depth reached]
),
'ENSMUSG00000089730' => array(
[maximum depth reached]
),
'ENSMUSG00000089831' => array(
[maximum depth reached]
),
'ENSMUSG00000089947' => array(
[maximum depth reached]
),
'ENSMUSG00000097784' => array(
[maximum depth reached]
),
'ENSMUSG00000097935' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adipose',
(int) 15 => 'Adrenal',
(int) 16 => 'Bladder',
(int) 17 => 'Brain',
(int) 18 => 'Breast',
(int) 19 => 'Colon',
(int) 20 => 'Heart',
(int) 21 => 'Kidney',
(int) 22 => 'Liver',
(int) 23 => 'Lung',
(int) 24 => 'Ovary',
(int) 25 => 'Testis',
(int) 26 => 'Adrenal',
(int) 27 => 'Brain',
(int) 28 => 'Breast',
(int) 29 => 'Kidney',
(int) 30 => 'Liver',
(int) 31 => 'Lung',
(int) 32 => 'Ovary',
(int) 33 => 'Placenta',
(int) 34 => 'Adipose',
(int) 35 => 'Adrenal',
(int) 36 => 'Heart',
(int) 37 => 'Ovary',
(int) 38 => 'Bladder',
(int) 39 => 'Brain',
(int) 40 => 'Liver',
(int) 41 => 'Placenta',
(int) 42 => 'Heart',
(int) 43 => 'Liver',
(int) 44 => 'Ovary',
(int) 45 => 'Adrenal',
(int) 46 => 'Heart',
(int) 47 => 'Ovary',
(int) 48 => 'Adipose',
(int) 49 => 'Adrenal',
(int) 50 => 'Bladder',
(int) 51 => 'Brain',
(int) 52 => 'Heart',
(int) 53 => 'Kidney',
(int) 54 => 'Liver',
(int) 55 => 'Lung',
(int) 56 => 'Ovary',
(int) 57 => 'Placenta',
(int) 58 => 'Adrenal',
(int) 59 => 'Breast',
(int) 60 => 'Ovary',
(int) 61 => 'Adipose',
(int) 62 => 'Adrenal',
(int) 63 => 'Bladder',
(int) 64 => 'Brain',
(int) 65 => 'Breast',
(int) 66 => 'Colon',
(int) 67 => 'Heart',
(int) 68 => 'Kidney',
(int) 69 => 'Liver',
(int) 70 => 'Lung',
(int) 71 => 'Muscle',
(int) 72 => 'Ovary',
(int) 73 => 'Placenta',
(int) 74 => 'Testis',
(int) 75 => 'Adipose',
(int) 76 => 'Adrenal',
(int) 77 => 'Breast',
(int) 78 => 'Adipose',
(int) 79 => 'Breast',
(int) 80 => 'Colon',
(int) 81 => 'Liver',
(int) 82 => 'Lung',
(int) 83 => 'Muscle',
(int) 84 => 'Ovary',
(int) 85 => 'Bladder',
(int) 86 => 'Brain',
(int) 87 => 'Muscle',
(int) 88 => 'Testis',
(int) 89 => 'Adipose',
(int) 90 => 'Kidney',
(int) 91 => 'Liver',
(int) 92 => 'Ovary',
(int) 93 => 'Placenta',
(int) 94 => 'Testis',
(int) 95 => 'Adipose',
(int) 96 => 'Adrenal',
(int) 97 => 'Bladder',
(int) 98 => 'Brain',
(int) 99 => 'Breast',
(int) 100 => 'Colon',
(int) 101 => 'Heart',
(int) 102 => 'Kidney',
(int) 103 => 'Liver',
(int) 104 => 'Lung',
(int) 105 => 'Muscle',
(int) 106 => 'Ovary',
(int) 107 => 'Placenta',
(int) 108 => 'Testis',
(int) 109 => 'Colon',
(int) 110 => 'Liver',
(int) 111 => 'Adipose',
(int) 112 => 'Adrenal',
(int) 113 => 'Bladder',
(int) 114 => 'Breast',
(int) 115 => 'Colon',
(int) 116 => 'Heart',
(int) 117 => 'Kidney',
(int) 118 => 'Liver',
(int) 119 => 'Lung',
(int) 120 => 'Muscle',
(int) 121 => 'Ovary',
(int) 122 => 'Testis',
(int) 123 => 'Testis',
(int) 124 => 'Adipose',
(int) 125 => 'Adrenal',
(int) 126 => 'Bladder',
(int) 127 => 'Brain',
(int) 128 => 'Breast',
(int) 129 => 'Colon',
(int) 130 => 'Heart',
(int) 131 => 'Kidney',
(int) 132 => 'Liver',
(int) 133 => 'Lung',
(int) 134 => 'Muscle',
(int) 135 => 'Ovary',
(int) 136 => 'Placenta',
(int) 137 => 'Testis',
(int) 138 => 'Adrenal',
(int) 139 => 'Breast',
(int) 140 => 'Colon',
(int) 141 => 'Heart',
(int) 142 => 'Kidney',
(int) 143 => 'Liver',
(int) 144 => 'Lung',
(int) 145 => 'Muscle',
(int) 146 => 'Ovary',
(int) 147 => 'Placenta',
(int) 148 => 'Bladder',
(int) 149 => 'Brain',
(int) 150 => 'Heart',
(int) 151 => 'Kidney',
(int) 152 => 'Liver',
(int) 153 => 'Lung',
(int) 154 => 'Muscle',
(int) 155 => 'Ovary',
(int) 156 => 'Placenta',
(int) 157 => 'Adrenal',
(int) 158 => 'Muscle',
(int) 159 => 'Placenta',
(int) 160 => 'Testis',
(int) 161 => 'Testis',
(int) 162 => 'Adipose',
(int) 163 => 'Adrenal',
(int) 164 => 'Bladder',
(int) 165 => 'Brain',
(int) 166 => 'Breast',
(int) 167 => 'Colon',
(int) 168 => 'Heart',
(int) 169 => 'Kidney',
(int) 170 => 'Liver',
(int) 171 => 'Lung',
(int) 172 => 'Muscle',
(int) 173 => 'Ovary',
(int) 174 => 'Bladder',
(int) 175 => 'Brain',
(int) 176 => 'Breast',
(int) 177 => 'Heart',
(int) 178 => 'Kidney',
(int) 179 => 'Liver',
(int) 180 => 'Ovary',
(int) 181 => 'Placenta',
(int) 182 => 'Testis',
(int) 183 => 'Adipose',
(int) 184 => 'Adrenal',
(int) 185 => 'Bladder',
(int) 186 => 'Brain',
(int) 187 => 'Breast',
(int) 188 => 'Colon',
(int) 189 => 'Heart',
(int) 190 => 'Kidney',
(int) 191 => 'Liver',
(int) 192 => 'Lung',
(int) 193 => 'Muscle',
(int) 194 => 'Ovary',
(int) 195 => 'Placenta',
(int) 196 => 'Testis',
(int) 197 => 'Adipose',
(int) 198 => 'Brain',
(int) 199 => 'Breast',
(int) 200 => 'Heart',
(int) 201 => 'Kidney',
(int) 202 => 'Liver',
(int) 203 => 'Lung',
(int) 204 => 'Ovary',
(int) 205 => 'Testis',
(int) 206 => 'Brain',
(int) 207 => 'Placenta',
(int) 208 => 'Testis',
(int) 209 => 'Brain',
(int) 210 => 'Heart',
(int) 211 => 'Kidney',
(int) 212 => 'Liver',
(int) 213 => 'Lung',
(int) 214 => 'Testis',
(int) 215 => 'Adipose',
(int) 216 => 'Adrenal',
(int) 217 => 'Bladder',
(int) 218 => 'Brain',
(int) 219 => 'Breast',
(int) 220 => 'Colon',
(int) 221 => 'Heart',
(int) 222 => 'Kidney',
(int) 223 => 'Liver',
(int) 224 => 'Lung',
(int) 225 => 'Muscle',
(int) 226 => 'Ovary',
(int) 227 => 'Placenta',
(int) 228 => 'Testis',
(int) 229 => 'Adipose',
(int) 230 => 'Adrenal',
(int) 231 => 'Bladder',
(int) 232 => 'Brain',
(int) 233 => 'Breast',
(int) 234 => 'Colon',
(int) 235 => 'Heart',
(int) 236 => 'Kidney',
(int) 237 => 'Liver',
(int) 238 => 'Lung',
(int) 239 => 'Muscle',
(int) 240 => 'Ovary',
(int) 241 => 'Placenta',
(int) 242 => 'Testis'
)
),
'CIL_0007JY_0004' => array(
'genes_in_region' => array(
'ENSDARG00000004861' => array(
[maximum depth reached]
),
'ENSDARG00000029482' => array(
[maximum depth reached]
),
'ENSDARG00000054414' => array(
[maximum depth reached]
),
'ENSDARG00000097115' => array(
[maximum depth reached]
),
'ENSDARG00000097219' => array(
[maximum depth reached]
),
'ENSDARG00000097668' => array(
[maximum depth reached]
),
'ENSDARG00000097817' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Liver',
(int) 1 => 'Brain',
(int) 2 => 'Heart',
(int) 3 => 'Kidney',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Muscle',
(int) 10 => 'Brain',
(int) 11 => 'Kidney',
(int) 12 => 'Brain',
(int) 13 => 'Liver',
(int) 14 => 'Brain',
(int) 15 => 'Heart',
(int) 16 => 'Kidney',
(int) 17 => 'Muscle',
(int) 18 => 'Brain',
(int) 19 => 'Liver'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JY_0003',
'tax_id' => '7955',
'chromosome' => '16',
'seq_start' => '3401465',
'seq_end' => '3401656',
'region_length' => '191',
'region_type' => 'UCNEbase',
'el_id' => 'ESRRG'
)
)
$gene_el = array(
'ENSMUST00000180973' => array(
'Adipose' => array(
'average_FPKM' => '0.094',
'stddev_FPKM' => '0.03'
),
'Adrenal' => array(
'average_FPKM' => '0.059',
'stddev_FPKM' => '0.01'
),
'Bladder' => array(
'average_FPKM' => '0.225',
'stddev_FPKM' => '0.22'
),
'Brain' => array(
'average_FPKM' => '0.211',
'stddev_FPKM' => '0.04'
),
'Breast' => array(
'average_FPKM' => '0.175',
'stddev_FPKM' => '0.13'
),
'Colon' => array(
'average_FPKM' => '0.077',
'stddev_FPKM' => '0.02'
),
'Heart' => array(
'average_FPKM' => '0.220',
'stddev_FPKM' => '0.03'
),
'Kidney' => array(
'average_FPKM' => '0.111',
'stddev_FPKM' => '0.09'
),
'Liver' => array(
'average_FPKM' => '0.117',
'stddev_FPKM' => '0.12'
),
'Lung' => array(
'average_FPKM' => '0.087',
'stddev_FPKM' => '0.00'
),
'Muscle' => array(
'average_FPKM' => '0.068',
'stddev_FPKM' => '0.03'
),
'Ovary' => array(
'average_FPKM' => '0.259',
'stddev_FPKM' => '0.22'
),
'Placenta' => array(
'average_FPKM' => '0.042',
'stddev_FPKM' => '0.04'
),
'Testis' => array(
'average_FPKM' => '1.061',
'stddev_FPKM' => '0.37'
)
)
)
$gene_key = 'ENSMUSG00000097935'
$is_first = false
$tran_el = array(
'Adipose' => array(
'average_FPKM' => '0.094',
'stddev_FPKM' => '0.03'
),
'Adrenal' => array(
'average_FPKM' => '0.059',
'stddev_FPKM' => '0.01'
),
'Bladder' => array(
'average_FPKM' => '0.225',
'stddev_FPKM' => '0.22'
),
'Brain' => array(
'average_FPKM' => '0.211',
'stddev_FPKM' => '0.04'
),
'Breast' => array(
'average_FPKM' => '0.175',
'stddev_FPKM' => '0.13'
),
'Colon' => array(
'average_FPKM' => '0.077',
'stddev_FPKM' => '0.02'
),
'Heart' => array(
'average_FPKM' => '0.220',
'stddev_FPKM' => '0.03'
),
'Kidney' => array(
'average_FPKM' => '0.111',
'stddev_FPKM' => '0.09'
),
'Liver' => array(
'average_FPKM' => '0.117',
'stddev_FPKM' => '0.12'
),
'Lung' => array(
'average_FPKM' => '0.087',
'stddev_FPKM' => '0.00'
),
'Muscle' => array(
'average_FPKM' => '0.068',
'stddev_FPKM' => '0.03'
),
'Ovary' => array(
'average_FPKM' => '0.259',
'stddev_FPKM' => '0.22'
),
'Placenta' => array(
'average_FPKM' => '0.042',
'stddev_FPKM' => '0.04'
),
'Testis' => array(
'average_FPKM' => '1.061',
'stddev_FPKM' => '0.37'
)
)
$tran_key = 'ENSMUST00000180973'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108