C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00086S_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1257 VISTA 9606 1:217734090-218335156
GeneTranscriptPositionBiotype
ENSG00000067533 (RRP15)
ribosomal RNA processing 15 homolog (S. cerevisiae) 		ENST00000366932 (RRP15-001) 218285287-218337983 protein_coding
ENST00000491428 (RRP15-002) 218285342-218302671 processed_transcript
ENSG00000162814 (SPATA17)
spermatogenesis associated 17 		ENST00000366933 (SPATA17-001) 217631324-217871696 protein_coding
ENST00000470448 (SPATA17-002) 217631324-217774424 nonsense_mediated_decay
ENST00000471021 (SPATA17-004) 217801718-217867588 processed_transcript
ENST00000491809 (SPATA17-005) 217862775-217867133 processed_transcript
ENST00000492747 (SPATA17-003) 217737844-217801768 processed_transcript
ENSG00000228247 (UBBP2)
ubiquitin B pseudogene 2 		ENST00000376781 (UBBP2-001) 217850403-217850633 processed_pseudogene
ENSG00000229016 (RP11-224O19.4)
 ENST00000434965 (RP11-224O19.4-001) 218301262-218301972 processed_pseudogene
ENSG00000231814 (LINC00210)
long intergenic non-protein coding RNA 210 		ENST00000431637 (LINC00210-001) 217892900-217920804 lincRNA
ENSG00000232100 (RP11-152L7.2)
 ENST00000456026 (RP11-152L7.2-001) 218043505-218059140 lincRNA
ENSG00000234070 (SPATA17-AS1)
SPATA17 antisense RNA 1 		ENST00000415765 (SPATA17-AS1-001) 217781198-217785120 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_00086S_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1257 VISTA 10090 1:186622310-187223505
GeneTranscriptPositionBiotype
ENSMUSG00000001305 (Rrp15)
ribosomal RNA processing 15 homolog (S. cerevisiae) 		ENSMUST00000001339 (Rrp15-001) 186720978-186749358 protein_coding
ENSMUST00000162336 (Rrp15-002) 186721092-186749325 retained_intron
ENSMUSG00000026611 (Spata17)
spermatogenesis associated 17 		ENSMUST00000027908 (Spata17-201) 187048407-187215446 protein_coding
ENSMUST00000110945 (Spata17-003) 187135293-187215421 protein_coding
ENSMUST00000183469 (Spata17-002) 187188861-187215446 processed_transcript
ENSMUST00000183656 (Spata17-006) 187135300-187143084 processed_transcript
ENSMUST00000183819 (Spata17-001) 187044648-187215465 protein_coding
ENSMUST00000183931 (Spata17-007) 187117263-187215437 protein_coding
ENSMUST00000183996 (Spata17-005) 187112484-187142904 protein_coding
ENSMUST00000184543 (Spata17-004) 187135293-187143097 protein_coding
ENSMUSG00000039224 (D1Pas1)
DNA segment, Chr 1, Pasteur Institute 1 		ENSMUST00000045108 (D1Pas1-001) 186967416-186970627 protein_coding
ENSMUSG00000039239 (Tgfb2)
transforming growth factor, beta 2 		ENSMUST00000045288 (Tgfb2-201) 186623186-186705992 protein_coding
ENSMUSG00000089730 (1700007P06Rik)
RIKEN cDNA 1700007P06 gene 		ENSMUST00000160380 (1700007P06Rik-001) 187125138-187127852 antisense
ENSMUSG00000089831 (Gm15508)
predicted gene 15508 		ENSMUST00000160330 (Gm15508-001) 187073011-187073335 processed_pseudogene
ENSMUSG00000089947 (Gm15509)
predicted gene 15509 		ENSMUST00000162615 (Gm15509-001) 187120869-187124365 sense_intronic
ENSMUSG00000097784 (A430105J06Rik)
RIKEN cDNA A430105J06 gene 		ENSMUST00000180869 (A430105J06Rik-201) 186749396-186752921 lincRNA
ENSMUSG00000097935 (Gm3809)
predicted gene 3809 		ENSMUST00000180973 (Gm3809-001) 186960508-186961513 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00086S_0001ENSG00000067533ENST00000366932ENST00000491428ENSG00000162814ENST00000366933ENST00000470448ENST00000471021ENST00000491809ENST00000492747ENSG00000228247ENST00000376781ENSG00000229016ENST00000434965ENSG00000231814ENST00000431637ENSG00000232100ENST00000456026ENSG00000234070ENST00000415765CIL_00086S_0002ENSMUSG00000001305ENSMUST00000001339ENSMUST00000162336ENSMUSG00000026611ENSMUST00000027908ENSMUST00000110945ENSMUST00000183469ENSMUST00000183656ENSMUST00000183819ENSMUST00000183931ENSMUST00000183996ENSMUST00000184543ENSMUSG00000039224ENSMUST00000045108ENSMUSG00000039239ENSMUST00000045288ENSMUSG00000089730ENSMUST00000160380ENSMUSG00000089831ENSMUST00000160330ENSMUSG00000089947ENSMUST00000162615ENSMUSG00000097784ENSMUST00000180869ENSMUSG00000097935ENSMUST00000180973
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00086S_0001ENSG00000067533ENST00000366932ENST00000491428ENSG00000162814ENST00000366933ENST00000470448ENST00000471021ENST00000491809ENST00000492747ENSG00000228247ENST00000376781ENSG00000229016ENST00000434965ENSG00000231814ENST00000431637ENSG00000232100ENST00000456026ENSG00000234070ENST00000415765CIL_00086S_0002ENSMUSG00000001305ENSMUST00000001339ENSMUST00000162336ENSMUSG00000026611ENSMUST00000027908ENSMUST00000110945ENSMUST00000183469ENSMUST00000183656ENSMUST00000183819ENSMUST00000183931ENSMUST00000183996ENSMUST00000184543ENSMUSG00000039224ENSMUST00000045108ENSMUSG00000039239ENSMUST00000045288ENSMUSG00000089730ENSMUST00000160380ENSMUSG00000089831ENSMUST00000160330ENSMUSG00000089947ENSMUST00000162615ENSMUSG00000097784ENSMUST00000180869ENSMUSG00000097935ENSMUST00000180973
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000067533 ENST00000366932 1.475±0.00 2.573±0.00 0.704±0.00 0.994±0.31 1.942±0.39 0.717±0.42 1.377±0.59 1.222±0.05 1.446±0.44 0.796±0.34 1.936±0.91 2.052±0.38 1.092±0.51 1.864±0.24
ENST00000491428 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.093±0.00 N/A 12.637±0.00 5.464±2.53 8.553±0.00
ENSG00000162814 ENST00000366933 0.017±0.00 0.031±0.00 0.185±0.00 0.097±0.00 0.113±0.00 0.008±0.00 0.019±0.00 0.165±0.00 0.010±0.00 0.303±0.00 0.020±0.00 0.108±0.07 0.020±0.00 1.184±0.00
ENST00000470448 N/A N/A N/A 0.367±0.00 0.111±0.00 0.066±0.00 0.096±0.03 N/A 0.146±0.12 0.929±0.00 0.119±0.00 0.603±0.00 N/A 18.928±0.00
ENST00000471021 0.064±0.00 N/A N/A N/A 0.207±0.00 N/A 0.204±0.00 0.371±0.00 N/A 1.241±0.00 N/A 0.615±0.37 0.100±0.08 14.921±0.00
ENST00000491809 0.264±0.00 0.781±0.00 N/A N/A N/A N/A 0.371±0.00 N/A N/A N/A 0.157±0.00 N/A N/A N/A
ENST00000492747 0.050±0.00 0.237±0.00 0.449±0.00 N/A 0.111±0.00 0.029±0.00 N/A N/A 0.448±0.00 1.322±0.00 N/A 0.554±0.58 0.191±0.00 28.066±0.00
ENSG00000228247 ENST00000376781 0.080±0.00 1.286±0.00 N/A 0.644±0.00 0.631±0.00 0.413±0.00 0.610±0.00 0.346±0.00 0.525±0.00 0.670±0.00 0.148±0.00 3.293±0.00 N/A 0.846±0.00
ENSG00000229016 ENST00000434965 N/A 0.013±0.00 N/A N/A N/A N/A 0.124±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000231814 ENST00000431637 N/A N/A N/A 0.009±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000232100 ENST00000456026 0.072±0.00 0.115±0.00 N/A 0.073±0.00 0.122±0.00 0.017±0.00 0.109±0.00 0.084±0.05 0.027±0.00 0.080±0.00 0.068±0.00 0.016±0.00 N/A 0.049±0.00
ENSG00000234070 ENST00000415765 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.135±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000001305 ENSMUST00000001339 1.376±0.55 1.291±0.35 8.358±0.89 5.047±2.67 2.034±0.45 1.140±0.52 1.632±0.30 2.632±0.58 7.621±6.79 1.461±0.52 4.367±0.38 7.051±9.40 26.398±23.29 8.339±10.38
ENSMUST00000162336 0.518±0.34 0.453±0.23 0.433±0.00 0.855±0.21 0.335±0.15 0.350±0.16 0.122±0.05 0.330±0.20 0.179±0.05 0.572±0.11 N/A 0.951±0.39 N/A 0.259±0.08
ENSMUSG00000026611 ENSMUST00000027908 0.129±0.10 N/A N/A N/A 0.090±0.03 0.089±0.01 N/A N/A 0.047±0.02 0.561±0.00 0.057±0.00 0.248±0.00 N/A N/A
ENSMUST00000110945 N/A N/A 0.022±0.00 0.075±0.00 N/A N/A N/A N/A N/A N/A 0.013±0.00 N/A N/A 16.578±6.84
ENSMUST00000183469 0.037±0.00 N/A N/A N/A N/A N/A N/A 0.206±0.00 0.049±0.02 N/A N/A 0.367±0.00 0.068±0.02 N/A
ENSMUST00000183656 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.526±1.12
ENSMUST00000183819 0.132±0.02 0.530±0.27 0.018±0.00 0.220±0.09 0.146±0.06 0.146±0.03 0.144±0.00 0.459±0.22 0.073±0.03 1.056±0.05 0.042±0.02 0.879±0.38 0.227±0.09 24.029±0.73
ENSMUST00000183931 N/A N/A N/A N/A N/A 0.208±0.00 N/A N/A 0.048±0.00 N/A N/A N/A N/A N/A
ENSMUST00000183996 0.320±0.17 0.353±0.13 0.037±0.01 N/A 0.288±0.20 0.463±0.28 0.172±0.00 1.486±0.87 0.081±0.02 1.081±0.18 0.063±0.00 2.725±1.09 N/A 19.815±2.74
ENSMUST00000184543 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.627±4.77
ENSMUSG00000039224 ENSMUST00000045108 N/A N/A 0.007±0.00 0.008±0.00 0.018±0.00 N/A 0.023±0.00 0.032±0.01 0.008±0.00 N/A N/A 0.017±0.00 0.112±0.06 60.815±29.08
ENSMUSG00000039239 ENSMUST00000045288 0.900±0.58 0.643±0.08 2.722±0.80 1.432±0.38 0.559±0.35 0.878±0.47 0.675±0.09 0.425±0.30 0.142±0.13 1.830±0.09 1.526±0.32 1.254±0.89 2.349±1.00 0.108±0.06
ENSMUSG00000089730 ENSMUST00000160380 0.060±0.01 N/A N/A 0.384±0.00 0.142±0.00 N/A 0.057±0.00 0.143±0.05 0.050±0.03 0.090±0.00 N/A 0.058±0.00 N/A 58.895±74.99
ENSMUSG00000089831 ENSMUST00000160330 N/A N/A N/A 0.052±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.061±0.00 0.191±0.00
ENSMUSG00000089947 ENSMUST00000162615 N/A N/A N/A 0.008±0.00 N/A N/A 0.014±0.00 0.017±0.00 0.010±0.00 0.024±0.00 N/A N/A N/A 1.585±0.85
ENSMUSG00000097784 ENSMUST00000180869 0.297±0.18 0.632±0.16 0.143±0.00 1.147±0.79 0.164±0.06 0.256±0.18 0.095±0.03 0.276±0.07 0.217±0.16 0.264±0.10 0.136±0.11 0.303±0.15 0.443±0.26 0.839±0.62
ENSMUSG00000097935 ENSMUST00000180973 0.094±0.03 0.059±0.01 0.225±0.22 0.211±0.04 0.175±0.13 0.077±0.02 0.220±0.03 0.111±0.09 0.117±0.12 0.087±0.00 0.068±0.03 0.259±0.22 0.042±0.04 1.061±0.37

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