C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: serine racemase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000001323 Srr 10090 - 11:74906359-74925948 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000065211 Srr-201 74906359-74925798 protein_coding
  ENSMUST00000108447 Srr-003 74906819-74925773 protein_coding
  ENSMUST00000108448 Srr-001 74906793-74925773 protein_coding
  ENSMUST00000121738 Srr-002 74906799-74925948 protein_coding
  ENSMUST00000123855 Srr-004 74910222-74925660 protein_coding
  ENSMUST00000127499 Srr-006 74906509-74925675 processed_transcript
  ENSMUST00000128556 Srr-005 74909741-74925682 protein_coding
  ENSMUST00000135587 Srr-007 74910367-74925703 retained_intron
  ENSMUST00000138612 Srr-010 74911102-74925658 protein_coding
  ENSMUST00000147817 Srr-008 74910452-74925675 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000065211ENSMUST00000108448ENSMUST00000121738
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000065211 N/A 5.639±0.01 11.753±2.06 N/A 5.389±0.54 N/A 7.707±2.48 6.247±2.81 2.627±0.00 N/A 8.001±0.35 12.647±0.00
ENSMUST00000108448 4.892±0.00 N/A N/A N/A N/A 3.748±0.46 11.083±1.70 10.009±1.73 3.604±0.50 12.482±0.10 14.472±5.00 13.217±0.00
ENSMUST00000121738 N/A N/A 8.865±0.00 8.261±0.00 N/A N/A 5.899±0.00 N/A N/A N/A 12.662±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RP CIL_0007RP_0002 VISTA 11:74746156-75348336
CIL_00093G CIL_00093G_0002 VISTA 11:74749027-75350435

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000287 IEA magnesium ion binding
GO:0003941 IEA L-serine ammonia-lyase activity
GO:0005509 IDA calcium ion binding
GO:0005515 IPI protein binding
GO:0005524 IDA ATP binding
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0006563 IDA L-serine metabolic process
GO:0007420 IEA brain development
GO:0007568 IEA aging
GO:0008721 IEA D-serine ammonia-lyase activity
GO:0009069 IDA serine family amino acid metabolic process
GO:0014070 IEA response to organic cyclic compound
GO:0016594 IDA glycine binding
GO:0018114 IDA threonine racemase activity
GO:0030165 IEA PDZ domain binding
GO:0030170 IMP pyridoxal phosphate binding
GO:0030378 IDA serine racemase activity
GO:0032496 IEA response to lipopolysaccharide
GO:0042493 IEA response to drug
GO:0042803 IDA protein homodimerization activity
GO:0042866 IEA pyruvate biosynthetic process
GO:0043025 IEA neuronal cell body
GO:0043278 IEA response to morphine
GO:0045177 IEA apical part of cell
GO:0051289 IDA protein homotetramerization
GO:0070178 IEA D-serine metabolic process
GO:0070179 IDA D-serine biosynthetic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000096045 SRR (1 of 2) serine racemase protein_coding Danio_rerio
ENSDARG00000096207 SRR (2 of 2) serine racemase protein_coding Danio_rerio
ENSG00000167720 SRR serine racemase protein_coding Homo_sapiens

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