C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine racemase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000065211 Srr-201 ENSMUSG00000001323 10090 - 11:74906359-74925798 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonKidneyLiverMusclePlacentaTestisENSMUST00000065211
Transcript ID Bladder Brain Colon Kidney Liver Muscle Placenta Testis
ENSMUST00000065211 5.639±0.01 11.753±2.06 5.389±0.54 7.707±2.48 6.247±2.81 2.627±0.00 8.001±0.35 12.647±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RP CIL_0007RP_0002 VISTA 11:74746156-75348336
CIL_00093G CIL_00093G_0002 VISTA 11:74749027-75350435

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000287 IEA magnesium ion binding
GO:0003941 IEA L-serine ammonia-lyase activity
GO:0005509 IDA calcium ion binding
GO:0005515 IPI protein binding
GO:0005524 IDA ATP binding
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0006563 IDA L-serine metabolic process
GO:0007420 IEA brain development
GO:0007568 IEA aging
GO:0008721 IEA D-serine ammonia-lyase activity
GO:0009069 IDA serine family amino acid metabolic process
GO:0014070 IEA response to organic cyclic compound
GO:0016594 IDA glycine binding
GO:0018114 IDA threonine racemase activity
GO:0030165 IEA PDZ domain binding
GO:0030170 IMP pyridoxal phosphate binding
GO:0030378 IDA serine racemase activity
GO:0032496 IEA response to lipopolysaccharide
GO:0042493 IEA response to drug
GO:0042803 IDA protein homodimerization activity
GO:0042866 IEA pyruvate biosynthetic process
GO:0043025 IEA neuronal cell body
GO:0043278 IEA response to morphine
GO:0045177 IEA apical part of cell
GO:0051289 IDA protein homotetramerization
GO:0070178 IEA D-serine metabolic process
GO:0070179 IDA D-serine biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000301364 TSR1-002 protein_coding Homo_sapiens 0 287
ENST00000344595 SRR-001 protein_coding Homo_sapiens 0 1238
ENST00000570662 SRR-009 protein_coding Homo_sapiens 0 398
ENST00000572709 SRR-002 protein_coding Homo_sapiens 0 305
ENST00000574229 SRR-004 protein_coding Homo_sapiens 0 302
ENST00000574987 SRR-008 protein_coding Homo_sapiens 0 588
ENST00000575049 TSR1-005 nonsense_mediated_decay Homo_sapiens 4e-28 128
ENST00000575840 SRR-003 protein_coding Homo_sapiens 0 532
ENST00000576620 SRR-006 protein_coding Homo_sapiens 0 505
ENST00000576848 SRR-005 protein_coding Homo_sapiens 0 490

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