C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine racemase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000108448 Srr-001 ENSMUSG00000001323 10090 - 11:74906793-74925773 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000108448
Transcript ID Adipose Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000108448 4.892±0.00 3.748±0.46 11.083±1.70 10.009±1.73 3.604±0.50 12.482±0.10 14.472±5.00 13.217±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RP CIL_0007RP_0002 VISTA 11:74746156-75348336
CIL_00093G CIL_00093G_0002 VISTA 11:74749027-75350435

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003941 IEA L-serine ammonia-lyase activity
GO:0005509 IDA calcium ion binding
GO:0005515 IPI protein binding
GO:0005524 IDA ATP binding
GO:0006563 IDA L-serine metabolic process
GO:0008721 IEA D-serine ammonia-lyase activity
GO:0009069 IDA serine family amino acid metabolic process
GO:0016594 IDA glycine binding
GO:0018114 IDA threonine racemase activity
GO:0030170 IMP pyridoxal phosphate binding
GO:0030378 IDA serine racemase activity
GO:0042803 IDA protein homodimerization activity
GO:0051289 IDA protein homotetramerization
GO:0070179 IDA D-serine biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000301364 TSR1-002 protein_coding Homo_sapiens 0 287
ENST00000344595 SRR-001 protein_coding Homo_sapiens 0 1230
ENST00000570662 SRR-009 protein_coding Homo_sapiens 0 394
ENST00000572709 SRR-002 protein_coding Homo_sapiens 0 298
ENST00000574229 SRR-004 protein_coding Homo_sapiens 0 298
ENST00000574987 SRR-008 protein_coding Homo_sapiens 0 588
ENST00000575049 TSR1-005 nonsense_mediated_decay Homo_sapiens 4e-28 128
ENST00000575840 SRR-003 protein_coding Homo_sapiens 0 527
ENST00000576620 SRR-006 protein_coding Homo_sapiens 0 497
ENST00000576848 SRR-005 protein_coding Homo_sapiens 0 490

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