C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: general transcription factor II H, polypeptide 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000001524 Gtf2h4 10090 - 17:35667730-35673739 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000001565 Gtf2h4-001 35667730-35673739 protein_coding
  ENSMUST00000159671 Gtf2h4-004 35671747-35673681 retained_intron
  ENSMUST00000159852 Gtf2h4-007 35672055-35673659 protein_coding
  ENSMUST00000160039 Gtf2h4-009 35670728-35673690 protein_coding
  ENSMUST00000160535 Gtf2h4-011 35667739-35669837 retained_intron
  ENSMUST00000160711 Gtf2h4-002 35672040-35673559 processed_transcript
  ENSMUST00000160734 Gtf2h4-003 35667741-35673618 protein_coding
  ENSMUST00000160752 Gtf2h4-008 35667830-35673703 nonsense_mediated_decay
  ENSMUST00000162266 Gtf2h4-006 35671329-35673517 protein_coding
  ENSMUST00000162604 Gtf2h4-005 35671884-35673298 retained_intron
  ENSMUST00000162894 Gtf2h4-010 35670371-35673688 retained_intron
  ENSMUST00000162927 Gtf2h4-012 35667738-35668760 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000001565ENSMUST00000159671ENSMUST00000160535ENSMUST00000160752ENSMUST00000162894
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000001565 11.257±1.64 6.903±1.39 7.779±1.84 9.176±4.08 7.562±2.88 8.768±1.02 6.626±0.94 7.538±0.50 10.918±2.38 8.869±0.53 7.391±0.53 10.557±3.21 11.139±2.99 10.728±4.42
ENSMUST00000159671 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.665±1.05 N/A
ENSMUST00000160535 N/A 7.247±0.88 2.942±0.00 5.252±0.00 6.715±1.34 6.297±1.46 2.649±0.00 5.956±0.37 6.389±1.38 N/A 2.500±0.00 7.532±2.22 7.164±2.11 2.897±0.00
ENSMUST00000160752 N/A N/A N/A N/A N/A N/A 0.999±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162894 N/A 2.829±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090O CIL_00090O_0002 VISTA 17:35419853-36021785

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000439 IEA core TFIIH complex
GO:0004003 IEA ATP-dependent DNA helicase activity
GO:0004672 ISS protein kinase activity
GO:0005515 IEA protein binding
GO:0005675 ISS holo TFIIH complex
GO:0006200 IEA ATP catabolic process
GO:0006289 IEA nucleotide-excision repair
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 ISS transcription from RNA polymerase II promoter
GO:0006468 IEA protein phosphorylation
GO:0008094 ISS DNA-dependent ATPase activity
GO:0008353 ISS RNA polymerase II carboxy-terminal domain kinase activity
GO:0032508 IEA DNA duplex unwinding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036071 gtf2h4 general transcription factor IIH, polypeptide 4 protein_coding Danio_rerio
ENSG00000213780 GTF2H4 general transcription factor IIH, polypeptide 4, 52kDa protein_coding Homo_sapiens

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