C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Crn, crooked neck-like 1 (Drosophila)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000001767 Crnkl1 10090 - 2:145917479-145935014 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000001818 Crnkl1-001 145917479-145935014 protein_coding
  ENSMUST00000145425 Crnkl1-003 145930392-145931391 processed_transcript
  ENSMUST00000147904 Crnkl1-002 145931972-145934714 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000001818ENSMUST00000145425ENSMUST00000147904
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000001818 2.443±1.19 1.931±0.41 3.706±1.47 7.887±0.97 1.670±0.43 1.597±0.74 2.110±0.50 1.936±0.64 2.336±1.38 2.595±1.20 3.683±0.36 7.193±3.90 9.086±7.94 8.401±4.50
ENSMUST00000145425 N/A N/A N/A N/A 2.643±0.26 3.414±0.61 N/A 3.637±0.04 2.128±0.34 N/A N/A 9.588±1.86 N/A N/A
ENSMUST00000147904 N/A N/A N/A N/A 4.386±0.86 3.574±0.83 N/A N/A N/A N/A N/A 8.993±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007Z5 CIL_0007Z5_0002 VISTA 2:145588311-146188756
CIL_0002MS CIL_0002MS_0002 CGP 2:145902099-145935014
CIL_0001TY CIL_0001TY_0002 CGP 2:145917479-146215039

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000245 ISS spliceosomal complex assembly
GO:0000398 ISO mRNA splicing, via spliceosome
GO:0003723 ISS RNA binding
GO:0005681 ISS spliceosomal complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000007901 crnkl1 crooked neck pre-mRNA splicing factor-like 1 (Drosophila) protein_coding Danio_rerio
ENSG00000101343 CRNKL1 crooked neck pre-mRNA splicing factor 1 protein_coding Homo_sapiens

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