C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: crooked neck pre-mRNA splicing factor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000101343 CRNKL1 9606 - 20:20034368-20056046 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000377327 CRNKL1-001 20034368-20056046 protein_coding
  ENST00000377340 CRNKL1-002 20034368-20056046 protein_coding
  ENST00000490258 CRNKL1-005 20036142-20038611 retained_intron
  ENST00000490910 CRNKL1-003 20034368-20056046 nonsense_mediated_decay
  ENST00000496549 CRNKL1-004 20034368-20056046 nonsense_mediated_decay
  ENST00000521379 CRNKL1-006 20036006-20038452 processed_transcript
  ENST00000536226 CRNKL1-007 20034374-20052466 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000521379ENST00000536226
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000521379 5.257±0.00 N/A N/A N/A 4.415±0.00 4.915±0.00 N/A N/A 1.915±0.00 N/A N/A N/A N/A N/A
ENST00000536226 3.768±0.00 2.333±0.00 3.482±0.00 4.344±0.54 3.419±0.59 5.068±0.00 2.926±0.97 2.863±2.30 1.951±0.00 3.922±1.91 5.123±2.49 7.507±2.99 5.454±1.62 11.211±1.93

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007Z5 CIL_0007Z5_0001 VISTA 20:19702996-20303586
CIL_0002MS CIL_0002MS_0001 CGP 20:20017116-20056046
CIL_0001TY CIL_0001TY_0001 CGP 20:20034368-20360702

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000245 IDA spliceosomal complex assembly
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003723 IDA RNA binding
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005681 IDA spliceosomal complex
GO:0005737 IEA cytoplasm
GO:0006396 IEA RNA processing
GO:0006397 IEA mRNA processing
GO:0044822 IDA poly(A) RNA binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000007901 crnkl1 crooked neck pre-mRNA splicing factor-like 1 (Drosophila) protein_coding Danio_rerio
ENSMUSG00000001767 Crnkl1 Crn, crooked neck-like 1 (Drosophila) protein_coding Mus_musculus
ENSMUSG00000092012 Gm4782 predicted gene 4782 protein_coding Mus_musculus

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