C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Crn, crooked neck-like 1 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000001818 Crnkl1-001 ENSMUSG00000001767 10090 - 2:145917479-145935014 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000001818
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000001818 2.443±1.19 1.931±0.41 3.706±1.47 7.887±0.97 1.670±0.43 1.597±0.74 2.110±0.50 1.936±0.64 2.336±1.38 2.595±1.20 3.683±0.36 7.193±3.90 9.086±7.94 8.401±4.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007Z5 CIL_0007Z5_0002 VISTA 2:145588311-146188756
CIL_0002MS CIL_0002MS_0002 CGP 2:145902099-145935014
CIL_0001TY CIL_0001TY_0002 CGP 2:145917479-146215039

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000245 ISS spliceosomal complex assembly
GO:0000398 ISO mRNA splicing, via spliceosome
GO:0003723 ISS RNA binding
GO:0005681 ISS spliceosomal complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000112689 crnkl1-201 protein_coding Danio_rerio 0 1107
ENST00000377327 CRNKL1-001 protein_coding Homo_sapiens 0 2627
ENST00000377340 CRNKL1-002 protein_coding Homo_sapiens 0 2627
ENST00000490258 CRNKL1-005 retained_intron Homo_sapiens 0 665
ENST00000490910 CRNKL1-003 nonsense_mediated_decay Homo_sapiens 0 2553
ENST00000496549 CRNKL1-004 nonsense_mediated_decay Homo_sapiens 0 2547
ENST00000521379 CRNKL1-006 processed_transcript Homo_sapiens 0 492
ENST00000536226 CRNKL1-007 protein_coding Homo_sapiens 0 2627

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